Spo10165 (gene)

Overview
NameSpo10165
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRing finger protein, putative
Locationchr2 : 6356989 .. 6357567 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATTCACCAAACTATCACTTTGGCCCTCCAACACTAAACGAGCAACAAGAAACAGGCCACTACAACTTAAGCATGCTCTACTGTGGATTCTTCGTGGTTGCAACTGCAGGACTTATCTTAGCAGTCTACCACTGTCTAGCTCTCAACTGGTGTGCAGACTACCCTTCTATTACATGGCCTCCTCGAAACAACAACGAAGCTCAAAGAAGCCATGCTCATCATCATCACCAGAAGATTAATGGTAGGAAACTTGTGGAGTTGGATTCAACTCTGTTTAAGTACAAAGGACAAGGTTGTGGTGGTGGTGGTAGTGGTGGTGCTGGTGGTGGTGCTGGTGGTGAAGAGTCAGAGTGTGCAGTGTGTTTGTCTGTGTATGAACAAGGGGAGGATGTTAGGGAGTTGGTTAGATGTAAGCATTCTTTTCATGCTTCTTGTATTGATATGTGGCTTTTCTCGCATTTTGATTGCCCGCTTTGTCGAGCACCGGTGGGTGTTGTTCCGGGCTGTGGCGGGCCTGCCGGGTCTGAGAATTTGGGTGCAGGTTTATCAGATTCAACTGTTCTTCCTGTATAA

mRNA sequence

ATGGGAGATTCACCAAACTATCACTTTGGCCCTCCAACACTAAACGAGCAACAAGAAACAGGCCACTACAACTTAAGCATGCTCTACTGTGGATTCTTCGTGGTTGCAACTGCAGGACTTATCTTAGCAGTCTACCACTGTCTAGCTCTCAACTGGTGTGCAGACTACCCTTCTATTACATGGCCTCCTCGAAACAACAACGAAGCTCAAAGAAGCCATGCTCATCATCATCACCAGAAGATTAATGGTAGGAAACTTGTGGAGTTGGATTCAACTCTGTTTAAGTACAAAGGACAAGGTTGTGGTGGTGGTGGTAGTGGTGGTGCTGGTGGTGGTGCTGGTGGTGAAGAGTCAGAGTGTGCAGTGTGTTTGTCTGTGTATGAACAAGGGGAGGATGTTAGGGAGTTGGTTAGATGTAAGCATTCTTTTCATGCTTCTTGTATTGATATGTGGCTTTTCTCGCATTTTGATTGCCCGCTTTGTCGAGCACCGGTGGGTGTTGTTCCGGGCTGTGGCGGGCCTGCCGGGTCTGAGAATTTGGGTGCAGGTTTATCAGATTCAACTGTTCTTCCTGTATAA

Coding sequence (CDS)

ATGGGAGATTCACCAAACTATCACTTTGGCCCTCCAACACTAAACGAGCAACAAGAAACAGGCCACTACAACTTAAGCATGCTCTACTGTGGATTCTTCGTGGTTGCAACTGCAGGACTTATCTTAGCAGTCTACCACTGTCTAGCTCTCAACTGGTGTGCAGACTACCCTTCTATTACATGGCCTCCTCGAAACAACAACGAAGCTCAAAGAAGCCATGCTCATCATCATCACCAGAAGATTAATGGTAGGAAACTTGTGGAGTTGGATTCAACTCTGTTTAAGTACAAAGGACAAGGTTGTGGTGGTGGTGGTAGTGGTGGTGCTGGTGGTGGTGCTGGTGGTGAAGAGTCAGAGTGTGCAGTGTGTTTGTCTGTGTATGAACAAGGGGAGGATGTTAGGGAGTTGGTTAGATGTAAGCATTCTTTTCATGCTTCTTGTATTGATATGTGGCTTTTCTCGCATTTTGATTGCCCGCTTTGTCGAGCACCGGTGGGTGTTGTTCCGGGCTGTGGCGGGCCTGCCGGGTCTGAGAATTTGGGTGCAGGTTTATCAGATTCAACTGTTCTTCCTGTATAA

Protein sequence

MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSITWPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENLGAGLSDSTVLPV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10165.1Spo10165.1mRNA


Homology
[Close]
BLAST of Spo10165.1 vs. NCBI nr
Match: gi|902195904|gb|KNA12986.1| (hypothetical protein SOVF_120840 [Spinacia oleracea])

HSP 1 Score: 410.6 bits (1054), Expect = 1.500e-111
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60
           MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT
Sbjct: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60

Query: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120
           WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC
Sbjct: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120

Query: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL 180
           AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL
Sbjct: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL 180

Query: 181 GAGLSDSTVLPV 193
           GAGLSDSTVLPV
Sbjct: 181 GAGLSDSTVLPV 192
[Close]
BLAST of Spo10165.1 vs. NCBI nr
Match: gi|731372829|ref|XP_010666459.1| (PREDICTED: RING-H2 finger protein ATL52-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 219.9 bits (559), Expect = 3.800e-54
Identity = 110/186 (59.14%), Postives = 127/186 (68.28%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60
           M +SPNYH  P ++NEQ    HYNLSMLYCGFFV+ATAGLILA+YHC+ALNWC DYPS T
Sbjct: 1   MSNSPNYHILPASVNEQSNNAHYNLSMLYCGFFVIATAGLILAIYHCIALNWCTDYPS-T 60

Query: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120
           WP       + S A    QK+   K++ELDS +FKYKG               G +  EC
Sbjct: 61  WP-------RASEAIASDQKLKTVKVMELDSNVFKYKG---------------GEDSEEC 120

Query: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL 180
            VCLSV+E+GEDVRELVRC+HSFHA CIDMWL+SHFDCPLCRAPVG      G A  +N 
Sbjct: 121 VVCLSVFEEGEDVRELVRCQHSFHAPCIDMWLYSHFDCPLCRAPVGGRCESQGVALVDNS 163

Query: 181 GAGLSD 187
           G G SD
Sbjct: 181 GPGFSD 163
[Close]
BLAST of Spo10165.1 vs. NCBI nr
Match: gi|304557181|gb|ADM35971.1| (RING zinc finger protein [Amaranthus hypochondriacus])

HSP 1 Score: 192.6 bits (488), Expect = 6.400e-46
Identity = 99/192 (51.56%), Postives = 124/192 (64.58%), Query Frame = 1 

		  

Query: 1   MGDS--PNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPS 60
           MGDS  PNY+  P + N+QQ + +YN+SMLYCGFFVVATAGL+LA+YHCLALNWC+DYP 
Sbjct: 1   MGDSHSPNYNLAPSSFNDQQISYNYNISMLYCGFFVVATAGLVLAIYHCLALNWCSDYPP 60

Query: 61  ITWPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEES 120
           + W        + +      Q+   RK++E +S  +KYK             G  G    
Sbjct: 61  V-W-------LRTAQTGPTEQQCQARKVIEFNSIRYKYKK------------GEMGTNNE 120

Query: 121 ECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSE 180
           EC VCLS +E+ ED+R+LV+CKHSFHA CIDMWLFSHFDCPLCRAPV V       A  +
Sbjct: 121 ECVVCLSGFEEEEDIRKLVKCKHSFHALCIDMWLFSHFDCPLCRAPVAVAVAVCSVARLD 172

Query: 181 NLGAGLSDSTVL 191
           + G+ LSDS  L
Sbjct: 181 SSGSELSDSANL 172
[Close]
BLAST of Spo10165.1 vs. NCBI nr
Match: gi|1009143623|ref|XP_015889363.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Ziziphus jujuba])

HSP 1 Score: 126.3 bits (316), Expect = 5.600e-26
Identity = 72/150 (48.00%), Postives = 92/150 (61.33%), Query Frame = 1 

		  

Query: 24  NLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSITWP--PRNNNEAQRSHAHHHHQKI 83
           NL MLY G  VV TA +ILA+Y+ + + WC      + P  P NN   + + +    +  
Sbjct: 21  NLPMLYYGLVVVGTAAVILALYNFIIIKWCTQRHGQSTPEGPNNNPFIEMATSTMRSRSR 80

Query: 84  NGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESECAVCLSVYEQGEDVRELVRCKH 143
           +  + +EL S+ FKYK +G G     G GG     + ECAVCLSV+E GE+VR+L  CKH
Sbjct: 81  SSIENLELLSS-FKYKKEGLGQEDEQGGGGVV---DYECAVCLSVFEDGEEVRKLPGCKH 140

Query: 144 SFHASCIDMWLFSHFDCPLCRAPVGVVPGC 172
           SFHASCIDMWL+SH DCPLCR PV   P C
Sbjct: 141 SFHASCIDMWLYSHSDCPLCRTPVPTGPRC 166
[Close]
BLAST of Spo10165.1 vs. NCBI nr
Match: gi|604311884|gb|EYU25878.1| (hypothetical protein MIMGU_mgv1a026706mg, partial [Erythranthe guttata])

HSP 1 Score: 122.5 bits (306), Expect = 8.200e-25
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60
           MGD P+ +  PP    +Q     NL MLY G  ++ TA +ILA+Y+ + + WC D  +  
Sbjct: 1   MGDPPSPYAPPPPPPPRQ-----NLPMLYYGLVIICTAAIILALYNLVIVQWCTDMTN-- 60

Query: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120
                 +  +R+       +     +  + S  FKYK +   GG            ++EC
Sbjct: 61  ----RGSRQRRAGGPTSSWRFRNSSVNPVPS--FKYKREDAEGG------------DTEC 120

Query: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVG 167
           AVCLSV+E+GE++R++ +CKH+FHA CIDMWL+SH DCPLCR+PVG
Sbjct: 121 AVCLSVFEEGEELRQMPKCKHNFHAPCIDMWLYSHMDCPLCRSPVG 141
[Close]
BLAST of Spo10165.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0E2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_120840 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.000e-111
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60
           MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT
Sbjct: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60

Query: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120
           WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC
Sbjct: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120

Query: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL 180
           AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL
Sbjct: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL 180

Query: 181 GAGLSDSTVLPV 193
           GAGLSDSTVLPV
Sbjct: 181 GAGLSDSTVLPV 192
[Close]
BLAST of Spo10165.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B4J4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_002210 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.600e-54
Identity = 110/186 (59.14%), Postives = 127/186 (68.28%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60
           M +SPNYH  P ++NEQ    HYNLSMLYCGFFV+ATAGLILA+YHC+ALNWC DYPS T
Sbjct: 1   MSNSPNYHILPASVNEQSNNAHYNLSMLYCGFFVIATAGLILAIYHCIALNWCTDYPS-T 60

Query: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120
           WP       + S A    QK+   K++ELDS +FKYKG               G +  EC
Sbjct: 61  WP-------RASEAIASDQKLKTVKVMELDSNVFKYKG---------------GEDSEEC 120

Query: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSENL 180
            VCLSV+E+GEDVRELVRC+HSFHA CIDMWL+SHFDCPLCRAPVG      G A  +N 
Sbjct: 121 VVCLSVFEEGEDVRELVRCQHSFHAPCIDMWLYSHFDCPLCRAPVGGRCESQGVALVDNS 163

Query: 181 GAGLSD 187
           G G SD
Sbjct: 181 GPGFSD 163
[Close]
BLAST of Spo10165.1 vs. UniProtKB/TrEMBL
Match: F8RNK2_AMAHP (RING zinc finger protein OS=Amaranthus hypochondriacus PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.500e-46
Identity = 99/192 (51.56%), Postives = 124/192 (64.58%), Query Frame = 1 

		  

Query: 1   MGDS--PNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPS 60
           MGDS  PNY+  P + N+QQ + +YN+SMLYCGFFVVATAGL+LA+YHCLALNWC+DYP 
Sbjct: 1   MGDSHSPNYNLAPSSFNDQQISYNYNISMLYCGFFVVATAGLVLAIYHCLALNWCSDYPP 60

Query: 61  ITWPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEES 120
           + W        + +      Q+   RK++E +S  +KYK             G  G    
Sbjct: 61  V-W-------LRTAQTGPTEQQCQARKVIEFNSIRYKYKK------------GEMGTNNE 120

Query: 121 ECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGSE 180
           EC VCLS +E+ ED+R+LV+CKHSFHA CIDMWLFSHFDCPLCRAPV V       A  +
Sbjct: 121 ECVVCLSGFEEEEDIRKLVKCKHSFHALCIDMWLFSHFDCPLCRAPVAVAVAVCSVARLD 172

Query: 181 NLGAGLSDSTVL 191
           + G+ LSDS  L
Sbjct: 181 SSGSELSDSANL 172
[Close]
BLAST of Spo10165.1 vs. UniProtKB/TrEMBL
Match: A0A022QF44_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a026706mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.700e-25
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGPPTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPSIT 60
           MGD P+ +  PP    +Q     NL MLY G  ++ TA +ILA+Y+ + + WC D  +  
Sbjct: 1   MGDPPSPYAPPPPPPPRQ-----NLPMLYYGLVIICTAAIILALYNLVIVQWCTDMTN-- 60

Query: 61  WPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFKYKGQGCGGGGSGGAGGGAGGEESEC 120
                 +  +R+       +     +  + S  FKYK +   GG            ++EC
Sbjct: 61  ----RGSRQRRAGGPTSSWRFRNSSVNPVPS--FKYKREDAEGG------------DTEC 120

Query: 121 AVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVG 167
           AVCLSV+E+GE++R++ +CKH+FHA CIDMWL+SH DCPLCR+PVG
Sbjct: 121 AVCLSVFEEGEELRQMPKCKHNFHAPCIDMWLYSHMDCPLCRSPVG 141
[Close]
BLAST of Spo10165.1 vs. UniProtKB/TrEMBL
Match: A0A061GT61_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_037571 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.800e-24
Identity = 73/176 (41.48%), Postives = 92/176 (52.27%), Query Frame = 1 

		  

Query: 1   MGDSPNYHFGP--PTLNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADYPS 60
           MGD+P    GP  P L+ +      NL MLY G  VV TA ++LA+Y+ + + WC     
Sbjct: 1   MGDTP----GPSSPPLSPKS-----NLPMLYYGLVVVGTAAIVLAIYNLIIIRWCTQ--- 60

Query: 61  ITWPPRNNNEAQRSHAHHHHQKINGRKLVELDSTL---FKYKGQGCGGGGSGGAGGGAGG 120
                    +  R       +   G+        L   FKY+ +      S   G    G
Sbjct: 61  -------RRDESRQRPTRLAELTAGQSFENPSRNLLSSFKYRKE------SSNMGSQDPG 120

Query: 121 EESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGC 172
            E ECAVCLS++E GE+VR+L RCKHSFHA CIDMWL+SHFDCPLCRA V   P C
Sbjct: 121 GEYECAVCLSIFEDGEEVRQLPRCKHSFHAPCIDMWLYSHFDCPLCRASVEPSPFC 151
[Close]
BLAST of Spo10165.1 vs. ExPASy Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.200e-13
Identity = 57/174 (32.76%), Postives = 80/174 (45.98%), Query Frame = 1 

		  

Query: 11  PPT--LNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADY----PSITWPPR 70
           PP+  L++   +   + S L      + T+ LIL  Y+ L   +C  +     S T    
Sbjct: 38  PPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLN 97

Query: 71  NNNEAQRSHAHHHHQKINGRKLVELDS-TLFKYKGQGCGGGGSGGAGGGAGGEESECAVC 130
           +N E   S         +G     + S T++KYK       G G   G      S+C+VC
Sbjct: 98  HNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKS------GDGFVDG------SDCSVC 157

Query: 131 LSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGS 178
           LS +E+ E +R L +C H+FH  CID WL SH +CPLCRA    V G   P  S
Sbjct: 158 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA---FVTGVNNPTAS 196
[Close]
BLAST of Spo10165.1 vs. ExPASy Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.300e-13
Identity = 56/181 (30.94%), Postives = 81/181 (44.75%), Query Frame = 1 

		  

Query: 9   FGPPT---LNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWC------------ 68
           F PP    L+++ ++   + S L      +  +  IL  Y+ L   +C            
Sbjct: 37  FPPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSA 96

Query: 69  -------ADYPSITWPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFK----YKGQGCG 128
                  +DY   TW   NNN    + A + +Q I G     LD +L K    YK +   
Sbjct: 97  AAINRISSDY---TWQGTNNNN--NNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMD 156

Query: 129 GGGSGGAGGGAGGEESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCR 164
           G            E S+C+VCLS +++ E +R L +C H+FH  CID WL SH +CPLCR
Sbjct: 157 GFV----------ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 202
[Close]
BLAST of Spo10165.1 vs. ExPASy Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 

		  

Query: 118 SECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPV 166
           +EC+VCL+ +E+ E +R L +C H+FH +CID WL SH +CPLCRAPV
Sbjct: 133 TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180
[Close]
BLAST of Spo10165.1 vs. ExPASy Swiss-Prot
Match: ATL63_ARATH (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 

		  

Query: 116 EESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPV 166
           EE EC +CL ++E G+  R+L  C H FH  CIDMWL SH  CPLCR+PV
Sbjct: 134 EEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183
[Close]
BLAST of Spo10165.1 vs. ExPASy Swiss-Prot
Match: ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.600e-12
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1 

		  

Query: 116 EESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVV----PGC 175
           E ++C VCL+ +E+ E +R L +C H+FH SCID WL SH +CPLCRA + ++    P  
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRY 232

Query: 176 GGPAGSENLGAG 184
            GP      G+G
Sbjct: 233 SGPVEVTPGGSG 244
[Close]
BLAST of Spo10165.1 vs. TAIR (Arabidopsis)
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.000e-14
Identity = 57/174 (32.76%), Postives = 80/174 (45.98%), Query Frame = 1 

		  

Query: 11  PPT--LNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWCADY----PSITWPPR 70
           PP+  L++   +   + S L      + T+ LIL  Y+ L   +C  +     S T    
Sbjct: 38  PPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLN 97

Query: 71  NNNEAQRSHAHHHHQKINGRKLVELDS-TLFKYKGQGCGGGGSGGAGGGAGGEESECAVC 130
           +N E   S         +G     + S T++KYK       G G   G      S+C+VC
Sbjct: 98  HNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKS------GDGFVDG------SDCSVC 157

Query: 131 LSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPVGVVPGCGGPAGS 178
           LS +E+ E +R L +C H+FH  CID WL SH +CPLCRA    V G   P  S
Sbjct: 158 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA---FVTGVNNPTAS 196
[Close]
BLAST of Spo10165.1 vs. TAIR (Arabidopsis)
Match: AT3G03550.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 5.300e-14
Identity = 56/181 (30.94%), Postives = 81/181 (44.75%), Query Frame = 1 

		  

Query: 9   FGPPT---LNEQQETGHYNLSMLYCGFFVVATAGLILAVYHCLALNWC------------ 68
           F PP    L+++ ++   + S L      +  +  IL  Y+ L   +C            
Sbjct: 37  FPPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSA 96

Query: 69  -------ADYPSITWPPRNNNEAQRSHAHHHHQKINGRKLVELDSTLFK----YKGQGCG 128
                  +DY   TW   NNN    + A + +Q I G     LD +L K    YK +   
Sbjct: 97  AAINRISSDY---TWQGTNNNN--NNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMD 156

Query: 129 GGGSGGAGGGAGGEESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCR 164
           G            E S+C+VCLS +++ E +R L +C H+FH  CID WL SH +CPLCR
Sbjct: 157 GFV----------ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 202
[Close]
BLAST of Spo10165.1 vs. TAIR (Arabidopsis)
Match: AT4G33565.1 (RING/U-box superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.900e-14
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1 

		  

Query: 116 EESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPV 166
           E ++C+VCLS +E+ E +R L +CKH+FH  CID WL SH +CPLCRAP+
Sbjct: 213 EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262
[Close]
BLAST of Spo10165.1 vs. TAIR (Arabidopsis)
Match: AT5G10380.1 (RING/U-box superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.900e-14
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 

		  

Query: 118 SECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPV 166
           +EC+VCL+ +E+ E +R L +C H+FH +CID WL SH +CPLCRAPV
Sbjct: 133 TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180
[Close]
BLAST of Spo10165.1 vs. TAIR (Arabidopsis)
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63)

HSP 1 Score: 74.7 bits (182), Expect = 6.900e-14
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 

		  

Query: 116 EESECAVCLSVYEQGEDVRELVRCKHSFHASCIDMWLFSHFDCPLCRAPV 166
           EE EC +CL ++E G+  R+L  C H FH  CIDMWL SH  CPLCR+PV
Sbjct: 134 EEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183
The following BLAST results are available for this feature:
BLAST of Spo10165.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902195904|gb|KNA12986.1|1.5e-111100.hypothetical protein SOVF_1208... [more]
gi|731372829|ref|XP_010666459.1|3.8e-5459.1PREDICTED: RING-H2 finger prot... [more]
gi|304557181|gb|ADM35971.1|6.4e-4651.5RING zinc finger protein [Amar... [more]
gi|1009143623|ref|XP_015889363.1|5.6e-2648.0PREDICTED: E3 ubiquitin-protei... [more]
gi|604311884|gb|EYU25878.1|8.2e-2539.1hypothetical protein MIMGU_mgv... [more]
back to top
BLAST of Spo10165.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R0E2_SPIOL1.0e-111100.Uncharacterized protein OS=Spi... [more]
A0A0J8B4J4_BETVU2.6e-5459.1Uncharacterized protein OS=Bet... [more]
F8RNK2_AMAHP4.5e-4651.5RING zinc finger protein OS=Am... [more]
A0A022QF44_ERYGU5.7e-2539.1Uncharacterized protein (Fragm... [more]
A0A061GT61_THECC4.8e-2441.4RING/U-box superfamily protein... [more]
back to top
BLAST of Spo10165.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL52_ARATH7.2e-1332.7RING-H2 finger protein ATL52 O... [more]
ATL51_ARATH9.3e-1330.9RING-H2 finger protein ATL51 O... [more]
ATL55_ARATH1.2e-1258.3E3 ubiquitin-protein ligase RI... [more]
ATL63_ARATH1.2e-1258.0RING-H2 finger protein ATL63 O... [more]
ATL54_ARATH4.6e-1244.4RING-H2 finger protein ATL54 O... [more]
back to top
BLAST of Spo10165.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G17600.14.0e-1432.7RING/U-box superfamily protein[more]
AT3G03550.15.3e-1430.9RING/U-box superfamily protein[more]
AT4G33565.16.9e-1458.0RING/U-box superfamily protein[more]
AT5G10380.16.9e-1458.3RING/U-box superfamily protein[more]
AT5G58580.16.9e-1458.0TOXICOS EN LEVADURA 63[more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 119..162
score: 7.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 120..161
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 120..162
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 116..165
score: 7.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 24..168
score: 8.9
NoneNo IPR availablePANTHERPTHR14155:SF93SUBFAMILY NOT NAMEDcoord: 24..168
score: 8.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 116..168
score: 6.67

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006516 glycoprotein catabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006857 oligopeptide transport
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0051604 protein maturation
biological_process GO:0006606 protein import into nucleus
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0009845 seed germination
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009846 pollen germination
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0030488 tRNA methylation
biological_process GO:0070475 rRNA base methylation
biological_process GO:0006396 RNA processing
biological_process GO:0000381 regulation of alternative mRNA splicing, via spliceosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0000932 P-body
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
cellular_component GO:0005622 intracellular
cellular_component GO:0048046 apoplast
cellular_component GO:0005840 ribosome
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005730 nucleolus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000785 chromatin
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0004560 alpha-L-fucosidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003723 RNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo222910.83Barchart | Table
Spo111950.81Barchart | Table
Spo157310.80Barchart | Table
Spo237130.78Barchart | Table
Spo003410.75Barchart | Table
Spo037390.74Barchart | Table
Spo197480.74Barchart | Table
Spo156150.74Barchart | Table
Spo025180.74Barchart | Table
Spo200520.74Barchart | Table
Spo257480.73Barchart | Table
Spo002640.73Barchart | Table
Spo151330.73Barchart | Table
Spo232980.73Barchart | Table
Spo044970.73Barchart | Table
Spo180960.73Barchart | Table
Spo108630.72Barchart | Table
Spo081240.72Barchart | Table
Spo095730.72Barchart | Table
Spo024770.72Barchart | Table
Spo156310.71Barchart | Table
Spo247850.71Barchart | Table
Spo018060.71Barchart | Table
Spo060020.71Barchart | Table
Spo200530.71Barchart | Table
Spo102690.71Barchart | Table
Spo148580.71Barchart | Table
Spo029360.70Barchart | Table
Spo011100.70Barchart | Table
Spo060050.70Barchart | Table
Spo238290.69Barchart | Table
Spo045380.69Barchart | Table
Spo132410.69Barchart | Table
Spo176210.69Barchart | Table
Spo137800.68Barchart | Table
Spo249310.68Barchart | Table
Spo220230.68Barchart | Table
Spo244160.68Barchart | Table
Spo148840.68Barchart | Table
Spo013140.68Barchart | Table
Spo168570.68Barchart | Table
Spo130610.68Barchart | Table
Spo164600.67Barchart | Table
Spo143230.67Barchart | Table
Spo261950.67Barchart | Table
Spo035270.67Barchart | Table
Spo030070.67Barchart | Table
Spo159340.67Barchart | Table
Spo087670.67Barchart | Table
Spo152350.66Barchart | Table
Spo163670.66Barchart | Table
Spo168730.66Barchart | Table
Spo184070.66Barchart | Table
Spo188400.66Barchart | Table
Spo191780.66Barchart | Table
Spo092330.66Barchart | Table
Spo069060.66Barchart | Table
Spo208960.66Barchart | Table
Spo209340.66Barchart | Table
Spo212070.66Barchart | Table
Spo026010.66Barchart | Table
Spo243880.66Barchart | Table
Spo245030.66Barchart | Table
Spo003600.66Barchart | Table
Spo155590.66Barchart | Table
Spo017030.65Barchart | Table
Spo266610.65Barchart | Table