Spo10212 (gene) | SpinachBase

Overview


Name	Spo10212
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	chr5 : 34615278 .. 34615493 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCGGTGACGGCGGCGATCATAGCGGTGGTGGGTCTAGGATTGGGCTGGATAGCAATCGAGATGGCCTGCAAACCATGCCTTGAGAAAGGCCGTGAAGCCATCGATCGTAGCCTCAATCCCGATTACGACCCTGATGACAACGACAACATCCACACTCCTCTCAACCCTGCCTCTGATTCCTCCACCTCGCCACCGTCTCAGGCCGCCTGA

mRNA sequence

ATGGGGGCGGTGACGGCGGCGATCATAGCGGTGGTGGGTCTAGGATTGGGCTGGATAGCAATCGAGATGGCCTGCAAACCATGCCTTGAGAAAGGCCGTGAAGCCATCGATCGTAGCCTCAATCCCGATTACGACCCTGATGACAACGACAACATCCACACTCCTCTCAACCCTGCCTCTGATTCCTCCACCTCGCCACCGTCTCAGGCCGCCTGA

Coding sequence (CDS)

ATGGGGGCGGTGACGGCGGCGATCATAGCGGTGGTGGGTCTAGGATTGGGCTGGATAGCAATCGAGATGGCCTGCAAACCATGCCTTGAGAAAGGCCGTGAAGCCATCGATCGTAGCCTCAATCCCGATTACGACCCTGATGACAACGACAACATCCACACTCCTCTCAACCCTGCCTCTGATTCCTCCACCTCGCCACCGTCTCAGGCCGCCTGA

Protein sequence

MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPASDSSTSPPSQAA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10212.1	Spo10212.1	mRNA

Homology

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BLAST of Spo10212.1 vs. NCBI nr
Match: gi|902136598|gb|KNA04465.1| (hypothetical protein SOVF_199470 [Spinacia oleracea])

HSP 1 Score: 139.4 bits (350), Expect = 2.400e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS
Sbjct: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60

Query: 61 DSSTSPPSQAA 72
          DSSTSPPSQAA
Sbjct: 61 DSSTSPPSQAA 71

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BLAST of Spo10212.1 vs. NCBI nr
Match: gi|731377947|ref|XP_010668026.1| (PREDICTED: uncharacterized protein LOC104885010 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 113.6 bits (283), Expect = 1.400e-22
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAV GLG+ WI IEMACKPCLEKGREAIDRSLNPDYDPDD+DNI  PLNP  
Sbjct: 1  MGAVTAAIIAVAGLGVAWITIEMACKPCLEKGREAIDRSLNPDYDPDDHDNIRAPLNPTV 60

Query: 61 DSSTSPPSQA 71
          DSS+  PSQ+
Sbjct: 61 DSSSDQPSQS 70

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BLAST of Spo10212.1 vs. NCBI nr
Match: gi|1021026882|gb|KZM84669.1| (hypothetical protein DCAR_027909 [Daucus carota subsp. sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-17
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNP 59
          MG VTAAIIA+ G+ LGWI IE+ACKPCLE+GREAIDRSLNPDYDPDD+D I  PLNP
Sbjct: 1  MGGVTAAIIAIAGIVLGWITIEIACKPCLEQGREAIDRSLNPDYDPDDDDRIRAPLNP 58

[Close]

BLAST of Spo10212.1 vs. NCBI nr
Match: gi|802596201|ref|XP_012072115.1| (PREDICTED: uncharacterized protein LOC105633999 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-17
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDD---NDNIHTPLN 60
          M A+T A+IAV G+ LGWIAIE+ACKPCLEKGREAIDRSLNPDYDPDD   + NIH PLN
Sbjct: 1  MAAITTALIAVAGIILGWIAIEIACKPCLEKGREAIDRSLNPDYDPDDDVVSSNIHAPLN 60

Query: 61 PASDSSTSPPS 69
          P SD   SP S
Sbjct: 61 PNSDGQ-SPAS 70

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BLAST of Spo10212.1 vs. NCBI nr
Match: gi|255557281|ref|XP_002519671.1| (PREDICTED: uncharacterized protein LOC8264099 [Ricinus communis])

HSP 1 Score: 95.1 bits (235), Expect = 5.200e-17
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNP-- 60
          M A+T+A+IAV G+ LGWIAIEMACKPCLE+GR AI RSLNPDYDPDD+ N+H PLNP  
Sbjct: 1  MAAITSALIAVAGVILGWIAIEMACKPCLEQGRNAIGRSLNPDYDPDDDLNVHAPLNPNP 60

Query: 61 ---ASDSSTSP 67
              SDSS++P
Sbjct: 61 NPDPSDSSSNP 71

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QB26_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199470 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.700e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS
Sbjct: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60

Query: 61 DSSTSPPSQAA 72
          DSSTSPPSQAA
Sbjct: 61 DSSTSPPSQAA 71

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B555_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_013700 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.800e-23
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAV GLG+ WI IEMACKPCLEKGREAIDRSLNPDYDPDD+DNI  PLNP  
Sbjct: 1  MGAVTAAIIAVAGLGVAWITIEMACKPCLEKGREAIDRSLNPDYDPDDHDNIRAPLNPTV 60

Query: 61 DSSTSPPSQA 71
          DSS+  PSQ+
Sbjct: 61 DSSSDQPSQS 70

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BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A067KSJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04626 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-17
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDD---NDNIHTPLN 60
          M A+T A+IAV G+ LGWIAIE+ACKPCLEKGREAIDRSLNPDYDPDD   + NIH PLN
Sbjct: 1  MAAITTALIAVAGIILGWIAIEIACKPCLEKGREAIDRSLNPDYDPDDDVVSSNIHAPLN 60

Query: 61 PASDSSTSPPS 69
          P SD   SP S
Sbjct: 61 PNSDGQ-SPAS 70

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: B9S102_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632320 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.600e-17
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNP-- 60
          M A+T+A+IAV G+ LGWIAIEMACKPCLE+GR AI RSLNPDYDPDD+ N+H PLNP  
Sbjct: 1  MAAITSALIAVAGVILGWIAIEMACKPCLEQGRNAIGRSLNPDYDPDDDLNVHAPLNPNP 60

Query: 61 ---ASDSSTSP 67
              SDSS++P
Sbjct: 61 NPDPSDSSSNP 71

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A068VG21_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008386001 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.300e-16
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDN-IHTPLNPA 60
          MGA+TAA+IA+ G+ LGWI IE+ACKPCLEKGREAIDR+LNPDYDPDD+D  I  PL P 
Sbjct: 1  MGALTAALIAIAGVALGWITIEIACKPCLEKGREAIDRNLNPDYDPDDHDEAIRAPLEPK 60

Query: 61 S------DSSTSPPSQA 71
          S       SSTS P +A
Sbjct: 61 SMQHSEHPSSTSTPVKA 77

[Close]

BLAST of Spo10212.1 vs. TAIR (Arabidopsis)
Match: AT2G34585.1 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 5.500e-17
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1

		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDND-----NIHTP 60
          M A+T+A+IA+ G+ LGWI IE+ACKPCLE GREAIDRSLNPDYDPDD D     ++  P
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVRAP 60

Query: 61 LNPASDSSTSPP 68
          L P      S P
Sbjct: 61 LIPNHPPDNSDP 72

The following BLAST results are available for this feature:

BLAST of Spo10212.1 vs. NCBI nr
BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
BLAST of Spo10212.1 vs. ExPASy Swiss-Prot
BLAST of Spo10212.1 vs. TAIR (Arabidopsis)

BLAST of Spo10212.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902136598\|gb\|KNA04465.1\|	2.4e-30	100.	hypothetical protein SOVF_1994...	[more]
gi\|731377947\|ref\|XP_010668026.1\|	1.4e-22	81.4	PREDICTED: uncharacterized pro...	[more]
gi\|1021026882\|gb\|KZM84669.1\|	1.0e-17	79.3	hypothetical protein DCAR_0279...	[more]
gi\|802596201\|ref\|XP_012072115.1\|	3.9e-17	73.2	PREDICTED: uncharacterized pro...	[more]
gi\|255557281\|ref\|XP_002519671.1\|	5.2e-17	69.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QB26_SPIOL	1.7e-30	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B555_BETVU	9.8e-23	81.4	Uncharacterized protein OS=Bet...	[more]
A0A067KSJ8_JATCU	2.8e-17	73.2	Uncharacterized protein OS=Jat...	[more]
B9S102_RICCO	3.6e-17	69.0	Putative uncharacterized prote...	[more]
A0A068VG21_COFCA	2.3e-16	66.2	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo10212.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo10212.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G34585.1	5.5e-17	59.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 1..57 score: 7.4
None	No IPR available	PANTHER	PTHR33982:SF3	SUBFAMILY NOT NAMED	coord: 1..57 score: 7.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006574	valine catabolic process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0019521	D-gluconate metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009811	stilbene biosynthetic process
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0009805	coumarin biosynthetic process
cellular_component	GO:0044428	nuclear part
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005773	vacuole
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005778	peroxisomal membrane
cellular_component	GO:0000123	histone acetyltransferase complex
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0008442	3-hydroxyisobutyrate dehydrogenase activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0045552	dihydrokaempferol 4-reductase activity
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0016621	cinnamoyl-CoA reductase activity
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004402	histone acetyltransferase activity
molecular_function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00194	0.77	Barchart \| Table
Spo25714	0.76	Barchart \| Table
Spo01066	0.76	Barchart \| Table
Spo27227	0.75	Barchart \| Table
Spo01039	0.73	Barchart \| Table
Spo22109	0.72	Barchart \| Table
Spo09288	0.71	Barchart \| Table
Spo16694	0.70	Barchart \| Table
Spo07534	0.70	Barchart \| Table
Spo03879	0.70	Barchart \| Table
Spo21430	0.70	Barchart \| Table
Spo01116	0.69	Barchart \| Table
Spo20047	0.68	Barchart \| Table
Spo11056	0.67	Barchart \| Table
Spo11642	0.66	Barchart \| Table
Spo17068	0.66	Barchart \| Table
Spo10146	0.65	Barchart \| Table
Spo12158	0.65	Barchart \| Table