Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCTTTTAAAAAAAAAAAAAAATCACAAACACCCACCACGTGTAACGTGTTTCATGAATCCCCTTTCCTATTCTTGCCGACTCGAGACCGTACTCACCACGTGTCATCTCCTCAGCTCTCTAGTCTACTTTCTATTAAAAGAAATCCAAAACACCCACGACACTATATAACTACATATCCACCCCCAAAATATAAGTTACATCTTACAAGTGTTACATTTCTCACAACAAAATCCTCATAAATTTCCAAAGTTAGCCAAAAAAACCAACTACAAACAAAAACGATGAGCACCAATATTACACCCGACCATGAAGAGTTCCGGATTGTTTGCCCGCCCGTAAACAAGGAAGACGGCCGACTACCACGTAAGTACACCGATGAAGGTCAAGGTGCCAAACAACGTACATCGCCTCCGATAGAGTGGTATAATGTTCCGGAAGGGACTAAGAGTTTGGCTTTGGTGGTGGAGGATATTGATGCCCCGGATCCAAGTAGTCCACTTGTTCCGTGGACTATTTGGGTCGTGGCCCATATCCCACCCACCTTAAAAGGGTTATCCGAGGGATTCTCGGGTAAGCAAGATCAGGAATTGGGTGATGAGTTTGGGAATATTGCGGAAGGGAATAATGATGATAAGGTACCTGGTTGGCGAGTTCCTACTATGCCTAGCCATGGGCATCGGATTGAGTTTAAGTTGTATGCACTTGATAAAGAAATTCATCTCGGCAAGACGGTATGTTTGTTTTTTCATTATTTTTTCCTAGTTATACTTGAAAAATCTAAATCAAGATTAACCCAATTAATATTTTTTTTTAATACTCATATCGTTTTAATCAACCGTCACGAGTCACGACAAATAACGAATTGCGAAAGCATGTTATGTATGTGTGTATGAACATTTTATTTTACAGCATTCCTTATAAAAAGTCAAAATGGTGTATACGTTTGTGAAACGGATGAATAGCTTGTTATCTATTCTAATATTTTAAAATACAATATTTGGAAGTGATGCCACGTATCATCACTTTCACGTATTATCTCTTTTATATTTTTTTTTTCTTTTTTTTGGTTAAATCATCATTTATATTCATCCTTTTCACTCTCCTCCTTAATTAATTAGATATTCATTTTATTTCAAAAATAATTTTATTTATTTAACATTCTAAATTTAATTTCATAATATTCCAAATGTTTCACATTTTTTTGTTTCAAAATTTGTGTATCCTGCTTTATATTACATAAATGATGTATTCGAATTTTTAAATTAAAAAATGATGCACGGGGTAAAAACTAGTTTCAATAAAAAAATTGTAACAATTATACTTCGTATTTTAGTTTAGCAATTTTGCAAACCAGTACCTCTTACCTTTTTTTTACAAGGTAAATGAAGCATTTTAATTTGTGTTATTGAGTTTAAAAAAAAATGTTACTTCACCATTTTAAATTTAGATATACGTATACGTATATCCAAATTCCAACGTAAGTATTTAATTTTTTAATCATCTAGAATGATTTAAACTTCATTCTTCTCATATTTGTAGAGGATTTAATTGTATAATGTAAACTTTGGTGACGTGCTTACAGGTGTACAAGGAGAGGTTGTTGGATGCAATTGAAGGTCATGTAATTGGAGAAGCGTCTATGATCGCAGTCTTTTAATCATCTTTCAATTAGACTTTTTCAAGTTTTGTTTGTTTATCTTCTTTAATTAATTGTCACCATCAACCTGGGCTTTTTAATTTCTGCTCGTCTTTTCTGAATAATGATGTATGTGTGCTGGCTTGAAATGATTGGATGATGTTGTAATTGTGTTGATGATCTATTCAAGTGCTGTTTGGTTGATTTGTGATACGTGAGTTTATACCGTACAATCGATTTTGTGAGGTTGTTTTTTCGGATATAGATATGTGTGGCAACACACATATCAGCTAAAAGATAAATAGCTAAAAGATAAAAGGAAGTACCATTTATGTTAAAAAAGTACCATTCTGTAAAAAAAAAAGACTATTCAGTTAAAAAAAGGACCATTTTTGTTTAAAAAAGTACCATTTAATTTCTTTTTTGTCATTTTTCTTATTTTGTCTTTTGCTATGATATGCATTTGCCCACACATATCTGATATCCGAAAATACTTCCTCTCGATTTTGTACCGTGTATGTGTATTGTTCGATTTTGTACCGTGTATTGTGGTCCTCAGTGTGTTCCGGAAGTTATCTACGAAGATAGACTTTCGTTGGGGCTATATCTTTGTAAAATTTTATTTTATTAATACATCGTTTCTAGCTTTGCATATATGACCCGAAAATTAAACCTACGAATAATTCGACCCGTGATCTGACCCTTTCTTCCAAAGAAAAACAAGAATGTTTTTCTTAGCTGGTGAAGGGAATTGAAGAAAACAAGAAGCAGGAAAGGAAAGAATACAAGAAGCAGGGGAAGTGAAACAAAAACGGAAAATAAAAGAAAACGGGGAAGATGACTATCTCCAATAGTTGTAGCTAGGTACTTGCTTGCAATTTTTAGAAATTTCAAGCTACTAGCTTGACAATTGGAGTTGAAATAATAAAGTAGCTTGGTCATTTAAGCTAATTTGTTTGAAATAAC CCCTTTTAAAAAAAAAAAAAAATCACAAACACCCACCACGTGTAACGTGTTTCATGAATCCCCTTTCCTATTCTTGCCGACTCGAGACCGTACTCACCACGTGTCATCTCCTCAGCTCTCTAGTCTACTTTCTATTAAAAGAAATCCAAAACACCCACGACACTATATAACTACATATCCACCCCCAAAATATAAGTTACATCTTACAAGTGTTACATTTCTCACAACAAAATCCTCATAAATTTCCAAAGTTAGCCAAAAAAACCAACTACAAACAAAAACGATGAGCACCAATATTACACCCGACCATGAAGAGTTCCGGATTGTTTGCCCGCCCGTAAACAAGGAAGACGGCCGACTACCACGTAAGTACACCGATGAAGGTCAAGGTGCCAAACAACGTACATCGCCTCCGATAGAGTGGTATAATGTTCCGGAAGGGACTAAGAGTTTGGCTTTGGTGGTGGAGGATATTGATGCCCCGGATCCAAGTAGTCCACTTGTTCCGTGGACTATTTGGGTCGTGGCCCATATCCCACCCACCTTAAAAGGGTTATCCGAGGGATTCTCGGGTAAGCAAGATCAGGAATTGGGTGATGAGTTTGGGAATATTGCGGAAGGGAATAATGATGATAAGGTACCTGGTTGGCGAGTTCCTACTATGCCTAGCCATGGGCATCGGATTGAGTTTAAGTTGTATGCACTTGATAAAGAAATTCATCTCGGCAAGACGGTGTACAAGGAGAGGTTGTTGGATGCAATTGAAGGTCATGTAATTGGAGAAGCGTCTATGATCGCAGTCTTTTAATCATCTTTCAATTAGACTTTTTCAAGTTTTGTTTGTTTATCTTCTTTAATTAATTGTCACCATCAACCTGGGCTTTTTAATTTCTGCTCGTCTTTTCTGAATAATGATGTATGTGTGCTGGCTTGAAATGATTGGATGATGTTGTAATTGTGTTGATGATCTATTCAAGTGCTGTTTGGTTGATTTGTGATACGTGAGTTTATACCGTACAATCGATTTTGTGAGGTTGTTTTTTCGGATATAGATATGTGTGGCAACACACATATCAGCTAAAAGATAAATAGCTAAAAGATAAAAGGAAGTACCATTTATGTTAAAAAAGTACCATTCTGTAAAAAAAAAAGACTATTCAGTTAAAAAAAGGACCATTTTTGTTTAAAAAAGTACCATTTAATTTCTTTTTTGTCATTTTTCTTATTTTGTCTTTTGCTATGATATGCATTTGCCCACACATATCTGATATCCGAAAATACTTCCTCTCGATTTTGTACCGTGTATGTGTATTGTTCGATTTTGTACCGTGTATTGTGGTCCTCAGTGTGTTCCGGAAGTTATCTACGAAGATAGACTTTCGTTGGGGCTATATCTTTGTAAAATTTTATTTTATTAATACATCGTTTCTAGCTTTGCATATATGACCCGAAAATTAAACCTACGAATAATTCGACCCGTGATCTGACCCTTTCTTCCAAAGAAAAACAAGAATGTTTTTCTTAGCTGGTGAAGGGAATTGAAGAAAACAAGAAGCAGGAAAGGAAAGAATACAAGAAGCAGGGGAAGTGAAACAAAAACGGAAAATAAAAGAAAACGGGGAAGATGACTATCTCCAATAGTTGTAGCTAGGTACTTGCTTGCAATTTTTAGAAATTTCAAGCTACTAGCTTGACAATTGGAGTTGAAATAATAAAGTAGCTTGGTCATTTAAGCTAATTTGTTTGAAATAAC ATGAGCACCAATATTACACCCGACCATGAAGAGTTCCGGATTGTTTGCCCGCCCGTAAACAAGGAAGACGGCCGACTACCACGTAAGTACACCGATGAAGGTCAAGGTGCCAAACAACGTACATCGCCTCCGATAGAGTGGTATAATGTTCCGGAAGGGACTAAGAGTTTGGCTTTGGTGGTGGAGGATATTGATGCCCCGGATCCAAGTAGTCCACTTGTTCCGTGGACTATTTGGGTCGTGGCCCATATCCCACCCACCTTAAAAGGGTTATCCGAGGGATTCTCGGGTAAGCAAGATCAGGAATTGGGTGATGAGTTTGGGAATATTGCGGAAGGGAATAATGATGATAAGGTACCTGGTTGGCGAGTTCCTACTATGCCTAGCCATGGGCATCGGATTGAGTTTAAGTTGTATGCACTTGATAAAGAAATTCATCTCGGCAAGACGGTGTACAAGGAGAGGTTGTTGGATGCAATTGAAGGTCATGTAATTGGAGAAGCGTCTATGATCGCAGTCTTTTAA MSTNITPDHEEFRIVCPPVNKEDGRLPRKYTDEGQGAKQRTSPPIEWYNVPEGTKSLALVVEDIDAPDPSSPLVPWTIWVVAHIPPTLKGLSEGFSGKQDQELGDEFGNIAEGNNDDKVPGWRVPTMPSHGHRIEFKLYALDKEIHLGKTVYKERLLDAIEGHVIGEASMIAVF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10360.1 vs. NCBI nr
Match: gi|902236275|gb|KNA24305.1| (hypothetical protein SOVF_016650 [Spinacia oleracea]) HSP 1 Score: 366.7 bits (940), Expect = 2.300e-98 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
BLAST of Spo10360.1 vs. NCBI nr
Match: gi|731331688|ref|XP_010676792.1| (PREDICTED: uncharacterized protein LOC104892530 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 302.4 bits (773), Expect = 5.200e-79 Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 1
BLAST of Spo10360.1 vs. NCBI nr
Match: gi|641837782|gb|KDO56732.1| (hypothetical protein CISIN_1g029999mg [Citrus sinensis]) HSP 1 Score: 252.3 bits (643), Expect = 6.200e-64 Identity = 119/165 (72.12%), Postives = 139/165 (84.24%), Query Frame = 1
BLAST of Spo10360.1 vs. NCBI nr
Match: gi|567873719|ref|XP_006429449.1| (hypothetical protein CICLE_v10012687mg [Citrus clementina]) HSP 1 Score: 251.9 bits (642), Expect = 8.100e-64 Identity = 118/165 (71.52%), Postives = 139/165 (84.24%), Query Frame = 1
BLAST of Spo10360.1 vs. NCBI nr
Match: gi|702238923|ref|XP_010035933.1| (PREDICTED: uncharacterized protein LOC104425032 [Eucalyptus grandis]) HSP 1 Score: 250.0 bits (637), Expect = 3.100e-63 Identity = 116/165 (70.30%), Postives = 140/165 (84.85%), Query Frame = 1
BLAST of Spo10360.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXN4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_016650 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 1.600e-98 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
BLAST of Spo10360.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F906_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g103100 PE=4 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 3.600e-79 Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 1
BLAST of Spo10360.1 vs. UniProtKB/TrEMBL
Match: A0A067EZU9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029999mg PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 4.300e-64 Identity = 119/165 (72.12%), Postives = 139/165 (84.24%), Query Frame = 1
BLAST of Spo10360.1 vs. UniProtKB/TrEMBL
Match: V4USY4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012687mg PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.600e-64 Identity = 118/165 (71.52%), Postives = 139/165 (84.24%), Query Frame = 1
BLAST of Spo10360.1 vs. UniProtKB/TrEMBL
Match: A0A059DD83_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00595 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 2.100e-63 Identity = 116/165 (70.30%), Postives = 140/165 (84.85%), Query Frame = 1
BLAST of Spo10360.1 vs. ExPASy Swiss-Prot
Match: Y273_METTH (UPF0098 protein MTH_273 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_273 PE=3 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.500e-22 Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 1
BLAST of Spo10360.1 vs. ExPASy Swiss-Prot
Match: Y109_CHLMU (UPF0098 protein TC_0109 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0109 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.300e-13 Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 1
BLAST of Spo10360.1 vs. ExPASy Swiss-Prot
Match: Y736_CHLTR (UPF0098 protein CT_736 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_736 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.700e-13 Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 1
BLAST of Spo10360.1 vs. ExPASy Swiss-Prot
Match: Y877_CHLPN (UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 OS=Chlamydia pneumoniae GN=CPn_0877 PE=3 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.800e-13 Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 1
BLAST of Spo10360.1 vs. ExPASy Swiss-Prot
Match: Y1269_PYRHO (UPF0098 protein PH1269 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1269 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.200e-11 Identity = 48/153 (31.37%), Postives = 80/153 (52.29%), Query Frame = 1
BLAST of Spo10360.1 vs. TAIR (Arabidopsis)
Match: AT5G01300.1 (PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 226.1 bits (575), Expect = 1.700e-59 Identity = 107/159 (67.30%), Postives = 125/159 (78.62%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10360.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10360.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10360.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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