Spo10401 (gene)

Overview
NameSpo10401
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 18902913 .. 18907533 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAGTGAGGACGATGATCCTTGCCCCAACCGATGCCGCGAGTGGACTCAAGGTACTGCTGCACAAGGTGGCGACACTTCTGGAGGTGGTTAATACCCTCAACACGGTAACACCACCGGAGTTTCTCACGGAGGATCTTAGCTGTTTCGATGTCGATCCATTTCTCTCGAACCAAATGCTCCCGCATTTCAAGCATTGCAACCGGGTCCTTGTATGGGTGCGCGGGATCGAAGTCGTCCGGCGGTGACTCGTCGAACTCTACCTTGAAGCTCTTTCGACCCATTTCGCCTCTCTTGCTTTCTCAATTCTCTCTCTCCTTCCTTCTTGCTTTGCAGTTTGCAACTGTGAAAGTCTGAGGGAATTGGGAATTAAGGGCGTGATTTTGATAGAGGCCCAATTACTCCCTTTCAGTAGAACTGTCAAACCAGATAGGATAATGGTCTAGTCGGGTTCAAGTTATTAGAGAAGTTGACTTAAATTGGGTCAGTGCTCAATGAAGATTGCACATTGGGCCCTTAGATCATTAAAATGAAAATTAAAAGTGATAAATAAATATGGATAATGGATTATGATTTTAAGGTTGTTAAATGGGTCATTGGATCGGTTATAAACGGCTGGAGTCACGTTAAAATTGTTTAATGTTGTGTTAATATTTCTATTCGGATCGGTTCATATGACTTCGATTTCGGTGAGGTCGGGTTATAAGTTGTTTCGGGATTGAACTCGGTTTCGGTTCGGGTAACTCCAATTCGAGTTAACCTCGAGTTTTTGAATGGAATTGGTTCGAGTTTAAAACGGTTTTAGTCGGTTTGATTTGGTTCGGATTGAGTTTGGTTCGGGTGTATGTTGGATTCGGGTACTATTGTACTGATTTACTTTGGGTACCGGGGTCATTTCCGGATCGACTAAGTCTTGGATTCAGGTCAAGTATGGATCGGTGAGTCTCGGGTTCGGGTCAAGCTTAGATAAAATGTACTCTGATACGGTCAATTACGGATTGAGTTTGTGTTTCAAGTTTAGATCGGGTTAAGTTTATAATCTTGTGTTCTATTAATTGAGTTACTCTCGAGGTCGCGATATAATTCATATCACTTTATTATTCTATGATTTCGTGCCAAATAAAGATATTTTAGATTTCTATTACTTTGTCTCCAGATTATTTAACAGGAGTATAAATAGAACTTAGAATAAATTGAGCATTTTTCTTGAAACAAGATAATGTCCAAAGTAGTTCCCAAATGGAAATGAATTTATTAATAACCGTGATTTATGAATAATGCAAATAATATAATATTTTCGTAATTAAACAGGTAAAAAAAGGTGGAAAAGTGTATTAAATGAATAAAATTTGACATTAACTAAATATAAATTGAGTTTAGATGTATATCTTAAACGAAAATGATAAAGGTCGCAACATGCAACCTTTAAGCCGTGTCACAATGATGACATGACATGCTTATGTGTCATAATTTAAATTGAAAATTAAAGTATTTAACTTATACTATATAACCTATTATATGTGTTGTAGGAAAATCTTAATATTCTAATTTGTTTCCTTCTTTATAATCACTACCTTGTTACATATTTTCCTAGTAAAAATATTGCATTCATAGTAAAAATAGTCTGATGACGCATAACCTACATACGTGGCCCCTATATGTACCAATTAAACTCCGACACGTAAGATTGTTGTCGCAACTTGCGACCTTTATCATCACCCTATCTTAAAAGTATATTTATTTTTACTATTATGCCATGTGATTTGTACTATTTATCAATAACAATTATTGATTTGGAATCACCCGTTCCCGAATGTTGAGTATAGCATTTTGCATTTAACGAACACAAATAATTTCCATCATCTATGGCAATATGTTACACTACACGTCTACACCTACTAATGAAATAGTGTTACATAACTATTTAACTTTTTTTGAAACTAAAAATTTATTGATAAAAAGTCATACGCCATCAACAAAAGAGATACTCCCTCCGTCCCGGAATACTCGACCCGGTTTGACCGGCACAGAGTTTAAGGGACTTGAATTGACTTATTTAATTTAATAGGTAGTAGTTGATAGTGGGGTATTATTTTAATGTAGTTAGTGGGAGGTGGGTTAAGAGGTGGGGTTGGGGGAGAGTAGGGGTTGAATTTTTAATTATTTTTGTATGGAGTAGGGGGTAGGTGGGTTAATAGGGGTGGAGTGAGAAATAATATAATATTGTTAGAATATTTCCATTTTTAGAAACAGGTCAAGTATTAAGGGACGGCCCGATAAGGAAAACATGTCAAGTATTCCGGGACGGAGGGAGTACTCCGTATGCATCTATGAAATACGTAACAAACCGAATCAAATAAAACTCGTTTTCTGCAAAACTACGATTATTGCACGTCGAACATCTTGTATACTTTATAACACATCGTTGTTTGATACAGCATTCAACGAGGAGGTCTTTTGATCTGTTGTAGTTTTGATATTGAATTAAATCAGATTCAATTGATTGTAAGCTTAGAACTGACATCTGTTGCGACATCACACAAATCTTCATCGATGAATCAATTTCTCCTGCATAATTAAATAATACACCAGAAATTTAGGTTCCTCTAACCCAAGACAAATTCGCCCTGAAATGAGAAGTAAAACCCTGTCTTTCGAGGAAGAACAGTTCCTCGCACAAAGAGGAAGTATTATTAGAATCCTAAAAAACAAATAAAATTAAAGAAAAGAACAACAAAATAAAAAGATCGGGGTTTCCCACGATAAAAAATCGATGGAAGCCCCTTCGAAATTCACTAATGGAGGCTAGGGTTTGAGAGAGGGAGAGGAGGGAGAGAACGACTCCTTTAACTATAAGGATAAATTGTTTTTACCAACTAAAAAATCGAAAAATTGATTTTACCATCTAAAAACTAAAATTTGTATTTACCACTTTAAAAAAATTTAAACTTGTTTTTTACCACCTAGCTGAAAACGGAAAAATAGATGAAACGTTTATGAACTACTTCCATTCCTTAAAGTTTTTACACTTACTATTTGCACAAAGTCCTATGCAATATTTAACCACCTAATATATCCAATTCTATCTGTGAAAAAATTATAGAAATTGATATTCTGAAAACATACCGAGATCAATCTAACATAATCTTACATGATAACATTTTAATGTATATGATAGCGAAAATTTTTGGTCAAAATTTTCTTACTTTGGACATATTTTTAAAGAGTAAAAACTTTCGCAAACGGAGGAGGTATATCATTGAAACGGGTGGGGTTAAACCATTGCACACTACAAAAATTGCCAATTCATTTTCCCTCTATTAAATTGCCAATTCATTTTCCCTCTATTATTTACGTAGTTAACTATGTTCGATGTCATGTTACAAGTTTGCACTCCTACCGTCCTACGTTTGTAATCCCCTTAACAAAAAAACACCCTTGCTGACGTGGACGGTATGGTGGGAATTAACTTAAAAAGAAACGTATTTTGAAAATTATTGAATTTTTATGCAATATTGAAGGAAATCGCTGTGGTAGAGTGGTAGCTCATTTTGTTTTTTTCCCTCCACATTTTCATTTAACTTCCCGCCATGTCAGACTGTTTCCAAGAAAGTTGTTAGACGAAATGAAGAAAGTGGGGTGTCTTAACTCAAAAATGTTGGTTAATAAAATCAACAATTATTCAAAAATTTCAACGGTCTCCAATTTGTTAATTTCCTACAACAAAGGAATGCCGTTTACATCTCCTCATGTTCTCATCATACACCCACGCCACATCATCTTCCATCTTTCTCCCACCTTTCTTCTGGTATTAACAATATTTTCTCCTGATTTTTTTCCAGATTCTGCATGTATTTTAGCTAAATATTTGTCATACCCCCCTTTTTTTTGGGTTATTTGATCAGACATTGTTAATCAGAAGTAAGTTTTATCTAAGATTATTGTTATTTTGTTGGGGGGTTTTTGGCATCATCTTTATGTTTGTTGATTTGGGTATTTGACTATTTTTTTCTGCTGTGCAAAAAAAAAGTCAATTGGGTTTTGCCTACCAACTGTTCGATGAAATGTTACTTGTTGGTTTTTGGATGATAGAATTGATCTTGATACCCAGATTTCGACTTTCATGTTTGAGTATGTGTTGAATTGCTTGTACAATGAGGGTAGATGTTGTTCATAAGGTCTCTTCTTGGAAATGGTTACGTCAAACATGTAGAAATCGACGTGTTTGCTTCGTTAAATTGTGTGCTTGACATAGTTGTATTATGTCATATGATTTCTCAACTGCTCAATGTTGAGGATGAGCTATTCCTTGATTGAGTAATCAATTTGTAGACAATTTTCCTTCTGCTAGAATTTACAATACTATATGAAGGCGATATATATAGATTAGTTTCTGTTCTCGGTTTAACTAGTTTTTCCATTGCTTTGATTCATTTTGATATGCTTCAAGAATTGCTGTTGCTGGCAAGTTTTATTGATAGATTTCAACAGGTTGTAATTGAGTATTGCTATTTTTTTTTTATGTAGGGAGTTGCAATTAAGATCCATCTTCGAAGACAACTGAATCATAATCCATATGCTTTGTTATTGATTCCCACTGTACCTGAATTGATATAG

mRNA sequence

ATGGAGGGAGTGAGGACGATGATCCTTGCCCCAACCGATGCCGCGAGTGGACTCAAGGTACTGCTGCACAAGGTGGCGACACTTCTGGAGGTGGTTAATACCCTCAACACGGTAACACCACCGGAGTTTCTCACGGAGGATCTTAGCTGTTTCGATGTCGATCCATTTCTCTCGAACCAAATGCTCCCGCATTTCAAGCATTGCAACCGGGGAGTTGCAATTAAGATCCATCTTCGAAGACAACTGAATCATAATCCATATGCTTTGTTATTGATTCCCACTGTACCTGAATTGATATAG

Coding sequence (CDS)

ATGGAGGGAGTGAGGACGATGATCCTTGCCCCAACCGATGCCGCGAGTGGACTCAAGGTACTGCTGCACAAGGTGGCGACACTTCTGGAGGTGGTTAATACCCTCAACACGGTAACACCACCGGAGTTTCTCACGGAGGATCTTAGCTGTTTCGATGTCGATCCATTTCTCTCGAACCAAATGCTCCCGCATTTCAAGCATTGCAACCGGGGAGTTGCAATTAAGATCCATCTTCGAAGACAACTGAATCATAATCCATATGCTTTGTTATTGATTCCCACTGTACCTGAATTGATATAG

Protein sequence

MEGVRTMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHFKHCNRGVAIKIHLRRQLNHNPYALLLIPTVPELI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10401.1Spo10401.1mRNA


Homology
[Close]
BLAST of Spo10401.1 vs. NCBI nr
Match: gi|255631026|gb|ACU15877.1| (unknown [Glycine max])

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-9
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 

		  

Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T +LAPTDAA GL++L+ +VA LLEVV+  + V P E L  DL   D+DP L + +LPH 
Sbjct: 36  TTVLAPTDAAGGLEILVDEVAALLEVVDAFDAVAPSELLPNDLGLLDLDPLLPHDVLPHL 95

Query: 66  KHCNRGVAIKIHLRR-QLNHNPYALLLIPTVP 97
           +H +R   + + +RR ++       L IP +P
Sbjct: 96  QHRHR---VLVRMRRIEIVRRRLLELNIPLLP 124
[Close]
BLAST of Spo10401.1 vs. NCBI nr
Match: gi|388511367|gb|AFK43745.1| (unknown [Lotus japonicus])

HSP 1 Score: 65.9 bits (159), Expect = 4.700e-8
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 

		  

Query: 7  MILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHFK 66
          MILAPT+  SG KVL++K+ TLL+VV+T + V P + L  DL   D+DP L + + PH +
Sbjct: 1  MILAPTNTTSGFKVLVNKMFTLLKVVDTFDAVAPTKLLPNDLGLLDLDPLLPDDVFPHLQ 60

Query: 67 HCNR 71
          H +R
Sbjct: 61 HRHR 64
[Close]
BLAST of Spo10401.1 vs. NCBI nr
Match: gi|217071134|gb|ACJ83927.1| (unknown [Medicago truncatula])

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 

		  

Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T I  PT+ +  LK+L HK+ T L ++N  N +TP +  T +L  FD++PF +N + PHF
Sbjct: 48  TTIFPPTNPSCRLKILFHKMTTFLMMINPFNPITPTKLFTNNLRFFDLNPFFTNNVFPHF 107

Query: 66  KH 68
           +H
Sbjct: 108 QH 109
[Close]
BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HAK2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 

		  

Query: 5  RTMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPH 64
          RT +LAP + A  +K+LL+KVA LL++VNT +TV P E  TEDL  F+VDP L +QMLPH
Sbjct: 5  RTKVLAPPNTAGCVKILLNKVAALLKMVNTFDTVAPTELFTEDLGFFNVDPLLPHQMLPH 64

Query: 65 FKHCNR 71
           +   R
Sbjct: 65 LEESYR 70
[Close]
BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: C6T2L1_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 

		  

Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T +LAPTDAA GL++L+ +VA LLEVV+  + V P E L  DL   D+DP L + +LPH 
Sbjct: 36  TTVLAPTDAAGGLEILVDEVAALLEVVDAFDAVAPSELLPNDLGLLDLDPLLPHDVLPHL 95

Query: 66  KHCNRGVAIKIHLRR-QLNHNPYALLLIPTVP 97
           +H +R   + + +RR ++       L IP +P
Sbjct: 96  QHRHR---VLVRMRRIEIVRRRLLELNIPLLP 124
[Close]
BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: I3SU03_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.300e-8
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 

		  

Query: 7  MILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHFK 66
          MILAPT+  SG KVL++K+ TLL+VV+T + V P + L  DL   D+DP L + + PH +
Sbjct: 1  MILAPTNTTSGFKVLVNKMFTLLKVVDTFDAVAPTKLLPNDLGLLDLDPLLPDDVFPHLQ 60

Query: 67 HCNR 71
          H +R
Sbjct: 61 HRHR 64
[Close]
BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: B7FGP8_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.800e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 

		  

Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T I  PT+ +  LK+L HK+ T L ++N  N +TP +  T +L  FD++PF +N + PHF
Sbjct: 48  TTIFPPTNPSCRLKILFHKMTTFLMMINPFNPITPTKLFTNNLRFFDLNPFFTNNVFPHF 107

Query: 66  KH 68
           +H
Sbjct: 108 QH 109
The following BLAST results are available for this feature:
BLAST of Spo10401.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|255631026|gb|ACU15877.1|1.9e-942.3unknown [Glycine max][more]
gi|388511367|gb|AFK43745.1|4.7e-848.4unknown [Lotus japonicus][more]
gi|217071134|gb|ACJ83927.1|4.0e-741.9unknown [Medicago truncatula][more]
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BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0V0HAK2_SOLCH1.6e-1054.5Putative ovule protein OS=Sola... [more]
C6T2L1_SOYBN1.3e-942.3Putative uncharacterized prote... [more]
I3SU03_LOTJA3.3e-848.4Uncharacterized protein OS=Lot... [more]
B7FGP8_MEDTR2.8e-741.9Putative uncharacterized prote... [more]
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BLAST of Spo10401.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10401.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression