Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGAGGTTAGTTTTTTCCCTCTCATTCTCTCTCTTAATTTCTTCATGGAGTTATTTTAAAGAAATTTCATACACGAAATTGATGTATTTTTGTTTATTTTAGAAGAAAGAAGGAGATCAGAAGAAGAACGATGGACAGAAAAAGGGCGGCGGTGGAGATGGTGGATCCACCACCGTCGTTTTGAAGTTTGACATGCATTGTGAAGGCTGTGCTAAGAAGGTCCGGAGATCAATGAAGAATTTCAATGGTAAAATTCTCGCAAAATTCAATTTTAATTAATTTTGTGTTAATTAAGCCGGTTGTTTCATTTTCCTATTTTTCCGTTTCACTCTTGAAATTTTCCGAATTGATTGATAATTTTGACCGTTATTAATGCCTAATCAAAATTCTTAATGTTAATTATGCATATCAATGCGTTTATTTATCAGTGAATATTTTATTCTTAATTAATTACTCCGTAGTAGTTAATGCAGATAATTGTAAATTTTGCTAAAGGTGTGTTTGCGTGTAAAATTGTAGGAGTGGAAAGTGTCAAGACAGATTGTTCAGCAGGCAAACTGACGGTGGTTGGAAAGGTGGACCCAGTAAAGATCAAGGAGAGGGTGGAGGAGAAAACTAAGAAGAAGGTGGAACTATTATCTTTCCAACCAAACAAGCCCTCTAACAAGGAAGGTGGCGGTGGCGGCGGCGGCGAGAAAAAGTCCGATGGTGGTGGAGGTGAGAAAAAGTCCGATGGCGGTGAGAAAAAAGCCGATGATAAAAAGTCAGAGGCGAAATCTGATGACAAGAAGTCAGAGGATAAGAAGGAGAAAGCCCAGGAAAAGCCCAAGGAGGTAATTTTTTTTTATAGTCTGAGCTCCTCTGTTTTGACTTTCCAGTTTCCCCCCTTATTTAATTTCCATGGCTACCAAAAAAGACCATGTTTTGAACATAATGTTTTCGATTCTAGTGTATGTTTGGTATCTATATCAATTTCAACTTTTCTACTCTATGAAATAATGATATTGATTGTGCAGTCTTGCTTGTATAAATCGTGTTAATTTTGTGTACACTTATCGATATCAATACAAAGTTTAACTCATAATACTCAAAATTATAAATTAAATTAAAATAAGAGAGTTAAAAGGGAATATGCGTTTTGTTTCATGTTTAAAGCATTAAATACAAATATACAATGCTTAAAATAATACTTGTACATGTACTAGTAGTGATTTAAAATTCATGACAAATTACATATTTCTTAAATTTGTTTGGGTATTGATTTAGGAACTTATGACAAATAACATGCCATGTTTGAGGAATGTCAGGAATTAAAAATGCCAATAGATTATCTAATTAATACGGTAGGAGTTTTTTGTGGACGGAGCATGCAAATAAGCTATGAATAACCAATTGTCTGTTGGTTCAATGGTGATTGGGGCTGAACTTGGTAGGGATAACTCGTGTTCGATCCCCCGCAACAACAATTGGGAGGGGACTGAAACCTATCCACCAGAACTTGCCCCGAATTCGGATTAGCCACAAGGGTGAATCGGGTGCTTAACAAAAAAAAAAAAAGCTATGAATAAAGATATACTCCGTCTGTTCCTGAATACTCAGTAATAGAAATTACTAATTTAGTGAGGGGAATGCTTCAAACTTAAGTTTCCTAGCTATGATGTCTCCGTTTGAAATCAATTGAGGAGAATGGATTTAAGAAACCTAACTAGTGTCGTATTTTACACCCCAACCCGAATTTAGTTATCATGTCACTAATTAATAATCCGTTGTCACATTACACTGTCAACGTGATTATTATTAGTTTTAGATGAACGGAAATCCATTTCAACTTAAGTTGATCCATATCTCTATTGCTTTCCGTAGACAATAACATTCCAACAGAAGGTCCAAGTTCATACATGCCAAAAGGATATGGTTTTGTTAAGCAAATTAATTTTTAATTAGTTAGGTAGTTTTTGTTATTGTTTTTTTCTCCTCCATTCAAATAAGGCCACTCTACTAATAATGATTATCTACGTAATCAAATTAATAATTAAAGTGGATTACATATTTAAGCACAGCAAAATTTGTCGTGTTATTATATCTGTTCTGGCTTGGAGATCATCATGATTCATGTGTGGACGAGACGAAACGAAACGATTCTAAGTCTGAGTACGTAATAACAATTGGTGGGATTAGTTTAACTACAATTTGAATAGTAATAATAGTAATAATAATAATAATAATAATCGATTTCATACAAAACTGGTTTCATATTGTTCTTTGTTTAATTTATAATTTTGTAACACACTTGCTAGCTCATCCGTGCAAAGGTATGATAGTGATGTATTTGTTGAATTGAAATCATCTTAGTATGTTTTTTATTTCTAAAAATTTATCAGCCATAATTTATATATTTGATGTTGATGTGGGTTTTTTAATTTATATAATTAGTGGCAAATATTAAGATGATGATGTATGTGTATCGTCATTAAATCCTTAATAATTTGATTTATTAAAAAGAATTGGTTTATTTTTGCAGCCTCAAGTGGCTACCGTATTATTGAAGACGAGGGTACACTGCGAAGGATGTGCTCAAAAAATAAAGAAAATTGTTGGCAAGTGTGATGGTGAGTGATTTTGATCTTAAACTTTGGCATGCTTCACTACCCAATCATCATCCTCTCTTTATTATTTTAAAATTTCTAATTATAAATATTCCGTAGTAGACTAGTAGTACTATAACTAGCGATATTTTAAGAAAAATATCTACTAGGCGTTGGATTACCGGGTGCTCTTACATAATGACATAAACCAATCTTGCAATAAGTTAAGTGGTCCTGTTCCATACTTATGTTTAGAATAGTAGAATTTGGAATTGAAATGCTATTATGTGGTACAGGTACAGGTACAGGTACAGAGTCTCACCTTCCTATATCTGGCAGCATTTGTTGTGCATAGAAACAAAATTTGATTCTTCCTCTCAATTTTATTAAGCGTGTTTCGCTTGTCAAAAAGAAAGCACCTAACTTAATTTGTTAAGCAGGAACTTTCTAGTAAAATCGGGGGGTTATTTCCAACTCTAAATAAAATAAAAATGAAAAATTGTTAATATTATATAATTAGTTGATAAGTGTCTAATGTTTGGTTTAATTTGGCAGGTGTACAAGATATTAATGTGGACTTACAAAAAGATGTGATCACGGTTAAGGGTACAATGAACATGAAAGATATGTTGCCTTACTTGAATATTAAGCTAAAGAGAAACGTAGAGATTGCTGCTCCTGCAAAGAAAGATGACAAAGCTGGTGGGGACAAGAAACCCAAAGAAGGCGGTGGTGGTGGAGCAAAAGAAAAACCTAAAGAAGGCGGTGGTGGTGGGTCATCAGAAAAACCAAAAGAAGGTGGTGGTGGTGGTGGATCATCGGAAAAAGGTAAAGGAGGCGGGGAGAAAAAGGAAGGTGGAGGAAAGAAAGATGGGGGTGAGGGGAATGCATCAAAGGGAGAAAATGTAACGAAAATAGAGGTGAACAAAATGGAGTATAACCCTTACGGTTATGGGTATGGCGCTCAAGCATACACTTATGACCCAAGGCAGCAAGGGGAAAGCAGCTATAGTCACCAAGTTGCAGATTATTGGCATGAACCCGAATTTTCTCACCCGCCCCAGATGTTCAGTGATGAGAATCCCAACGCCTGCTCAGTTATGTGAATATGTGATTGGGTTGAATTTCAATTTCAATTTCAATTTATTGGTTTAGTAGTTCTACCACTTTTTTTAAACAATGTAAATAGCTGATTAGTGAGGCAGAGCTTAATATCGATATTACTAAATATTATCTTTTACTATATATATCTGACGAGAGCAGAGTTAGTTAGACTTTTTATTCTTTCTCTTGTTATTTTCTTAGTAAATTTTATATATTAGTAAATAGTTGGTTTTGTTAATACGTTGAATATTTGTAATGGCAAAATGATGGATATTTTCCCAAGGAAATGAAATAGGTGGTAGTTGACTGAAATTTTATATTATTGTTTTTTCTAT ATGGGTGAGAAGAAAGAAGGAGATCAGAAGAAGAACGATGGACAGAAAAAGGGCGGCGGTGGAGATGGTGGATCCACCACCGTCGTTTTGAAGTTTGACATGCATTGTGAAGGCTGTGCTAAGAAGGTCCGGAGATCAATGAAGAATTTCAATGGAGTGGAAAGTGTCAAGACAGATTGTTCAGCAGGCAAACTGACGGTGGTTGGAAAGGTGGACCCAGTAAAGATCAAGGAGAGGGTGGAGGAGAAAACTAAGAAGAAGGTGGAACTATTATCTTTCCAACCAAACAAGCCCTCTAACAAGGAAGGTGGCGGTGGCGGCGGCGGCGAGAAAAAGTCCGATGGTGGTGGAGGTGAGAAAAAGTCCGATGGCGGTGAGAAAAAAGCCGATGATAAAAAGTCAGAGGCGAAATCTGATGACAAGAAGTCAGAGGATAAGAAGGAGAAAGCCCAGGAAAAGCCCAAGGAGCCTCAAGTGGCTACCGTATTATTGAAGACGAGGGTACACTGCGAAGGATGTGCTCAAAAAATAAAGAAAATTGTTGGCAAGTGTGATGGTGTACAAGATATTAATGTGGACTTACAAAAAGATGTGATCACGGTTAAGGGTACAATGAACATGAAAGATATGTTGCCTTACTTGAATATTAAGCTAAAGAGAAACGTAGAGATTGCTGCTCCTGCAAAGAAAGATGACAAAGCTGGTGGGGACAAGAAACCCAAAGAAGGCGGTGGTGGTGGAGCAAAAGAAAAACCTAAAGAAGGCGGTGGTGGTGGGTCATCAGAAAAACCAAAAGAAGGTGGTGGTGGTGGTGGATCATCGGAAAAAGGTAAAGGAGGCGGGGAGAAAAAGGAAGGTGGAGGAAAGAAAGATGGGGGTGAGGGGAATGCATCAAAGGGAGAAAATGTAACGAAAATAGAGGTGAACAAAATGGAGTATAACCCTTACGGTTATGGGTATGGCGCTCAAGCATACACTTATGACCCAAGGCAGCAAGGGGAAAGCAGCTATAGTCACCAAGTTGCAGATTATTGGCATGAACCCGAATTTTCTCACCCGCCCCAGATGTTCAGTGATGAGAATCCCAACGCCTGCTCAGTTATGTGAATATGTGATTGGGTTGAATTTCAATTTCAATTTCAATTTATTGGTTTAGTAGTTCTACCACTTTTTTTAAACAATGTAAATAGCTGATTAGTGAGGCAGAGCTTAATATCGATATTACTAAATATTATCTTTTACTATATATATCTGACGAGAGCAGAGTTAGTTAGACTTTTTATTCTTTCTCTTGTTATTTTCTTAGTAAATTTTATATATTAGTAAATAGTTGGTTTTGTTAATACGTTGAATATTTGTAATGGCAAAATGATGGATATTTTCCCAAGGAAATGAAATAGGTGGTAGTTGACTGAAATTTTATATTATTGTTTTTTCTAT ATGGGTGAGAAGAAAGAAGGAGATCAGAAGAAGAACGATGGACAGAAAAAGGGCGGCGGTGGAGATGGTGGATCCACCACCGTCGTTTTGAAGTTTGACATGCATTGTGAAGGCTGTGCTAAGAAGGTCCGGAGATCAATGAAGAATTTCAATGGAGTGGAAAGTGTCAAGACAGATTGTTCAGCAGGCAAACTGACGGTGGTTGGAAAGGTGGACCCAGTAAAGATCAAGGAGAGGGTGGAGGAGAAAACTAAGAAGAAGGTGGAACTATTATCTTTCCAACCAAACAAGCCCTCTAACAAGGAAGGTGGCGGTGGCGGCGGCGGCGAGAAAAAGTCCGATGGTGGTGGAGGTGAGAAAAAGTCCGATGGCGGTGAGAAAAAAGCCGATGATAAAAAGTCAGAGGCGAAATCTGATGACAAGAAGTCAGAGGATAAGAAGGAGAAAGCCCAGGAAAAGCCCAAGGAGCCTCAAGTGGCTACCGTATTATTGAAGACGAGGGTACACTGCGAAGGATGTGCTCAAAAAATAAAGAAAATTGTTGGCAAGTGTGATGGTGTACAAGATATTAATGTGGACTTACAAAAAGATGTGATCACGGTTAAGGGTACAATGAACATGAAAGATATGTTGCCTTACTTGAATATTAAGCTAAAGAGAAACGTAGAGATTGCTGCTCCTGCAAAGAAAGATGACAAAGCTGGTGGGGACAAGAAACCCAAAGAAGGCGGTGGTGGTGGAGCAAAAGAAAAACCTAAAGAAGGCGGTGGTGGTGGGTCATCAGAAAAACCAAAAGAAGGTGGTGGTGGTGGTGGATCATCGGAAAAAGGTAAAGGAGGCGGGGAGAAAAAGGAAGGTGGAGGAAAGAAAGATGGGGGTGAGGGGAATGCATCAAAGGGAGAAAATGTAACGAAAATAGAGGTGAACAAAATGGAGTATAACCCTTACGGTTATGGGTATGGCGCTCAAGCATACACTTATGACCCAAGGCAGCAAGGGGAAAGCAGCTATAGTCACCAAGTTGCAGATTATTGGCATGAACCCGAATTTTCTCACCCGCCCCAGATGTTCAGTGATGAGAATCCCAACGCCTGCTCAGTTATGTGA MGEKKEGDQKKNDGQKKGGGGDGGSTTVVLKFDMHCEGCAKKVRRSMKNFNGVESVKTDCSAGKLTVVGKVDPVKIKERVEEKTKKKVELLSFQPNKPSNKEGGGGGGGEKKSDGGGGEKKSDGGEKKADDKKSEAKSDDKKSEDKKEKAQEKPKEPQVATVLLKTRVHCEGCAQKIKKIVGKCDGVQDINVDLQKDVITVKGTMNMKDMLPYLNIKLKRNVEIAAPAKKDDKAGGDKKPKEGGGGGAKEKPKEGGGGGSSEKPKEGGGGGGSSEKGKGGGEKKEGGGKKDGGEGNASKGENVTKIEVNKMEYNPYGYGYGAQAYTYDPRQQGESSYSHQVADYWHEPEFSHPPQMFSDENPNACSVM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10456.1 vs. NCBI nr
Match: gi|902164878|gb|KNA07013.1| (hypothetical protein SOVF_175820 [Spinacia oleracea]) HSP 1 Score: 622.1 bits (1603), Expect = 6.300e-175 Identity = 346/368 (94.02%), Postives = 346/368 (94.02%), Query Frame = 1
BLAST of Spo10456.1 vs. NCBI nr
Match: gi|731345672|ref|XP_010684043.1| (PREDICTED: protein lingerer-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 458.4 bits (1178), Expect = 1.200e-125 Identity = 278/373 (74.53%), Postives = 311/373 (83.38%), Query Frame = 1
BLAST of Spo10456.1 vs. NCBI nr
Match: gi|698568485|ref|XP_009774060.1| (PREDICTED: uncharacterized protein LOC104224174 [Nicotiana sylvestris]) HSP 1 Score: 282.3 bits (721), Expect = 1.200e-72 Identity = 204/404 (50.50%), Postives = 253/404 (62.62%), Query Frame = 1
BLAST of Spo10456.1 vs. NCBI nr
Match: gi|460402253|ref|XP_004246628.1| (PREDICTED: neurofilament medium polypeptide [Solanum lycopersicum]) HSP 1 Score: 277.7 bits (709), Expect = 2.900e-71 Identity = 206/418 (49.28%), Postives = 252/418 (60.29%), Query Frame = 1
BLAST of Spo10456.1 vs. NCBI nr
Match: gi|970054036|ref|XP_015088648.1| (PREDICTED: uncharacterized protein LOC107031708 [Solanum pennellii]) HSP 1 Score: 270.4 bits (690), Expect = 4.600e-69 Identity = 197/409 (48.17%), Postives = 249/409 (60.88%), Query Frame = 1
BLAST of Spo10456.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_175820 PE=4 SV=1) HSP 1 Score: 622.1 bits (1603), Expect = 4.400e-175 Identity = 346/368 (94.02%), Postives = 346/368 (94.02%), Query Frame = 1
BLAST of Spo10456.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1N7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161540 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 8.400e-126 Identity = 278/373 (74.53%), Postives = 311/373 (83.38%), Query Frame = 1
BLAST of Spo10456.1 vs. UniProtKB/TrEMBL
Match: K4CQK9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 2.000e-71 Identity = 206/418 (49.28%), Postives = 252/418 (60.29%), Query Frame = 1
BLAST of Spo10456.1 vs. UniProtKB/TrEMBL
Match: M0ZX54_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003887 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 2.900e-70 Identity = 200/410 (48.78%), Postives = 249/410 (60.73%), Query Frame = 1
BLAST of Spo10456.1 vs. UniProtKB/TrEMBL
Match: W1NPD2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00072p00184150 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 1.100e-64 Identity = 183/362 (50.55%), Postives = 221/362 (61.05%), Query Frame = 1
BLAST of Spo10456.1 vs. ExPASy Swiss-Prot
Match: HIP3_ARATH (Heavy metal-associated isoprenylated plant protein 3 OS=Arabidopsis thaliana GN=HIPP3 PE=1 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.200e-45 Identity = 152/373 (40.75%), Postives = 198/373 (53.08%), Query Frame = 1
BLAST of Spo10456.1 vs. ExPASy Swiss-Prot
Match: HIP26_ARATH (Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.300e-10 Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
BLAST of Spo10456.1 vs. ExPASy Swiss-Prot
Match: HIP27_ARATH (Heavy metal-associated isoprenylated plant protein 27 OS=Arabidopsis thaliana GN=HIPP27 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 7.800e-8 Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 1
BLAST of Spo10456.1 vs. ExPASy Swiss-Prot
Match: HIP25_ARATH (Heavy metal-associated isoprenylated plant protein 25 OS=Arabidopsis thaliana GN=HIPP25 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.300e-7 Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
BLAST of Spo10456.1 vs. ExPASy Swiss-Prot
Match: HIP22_ARATH (Heavy metal-associated isoprenylated plant protein 22 OS=Arabidopsis thaliana GN=HIPP22 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.500e-6 Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 1
BLAST of Spo10456.1 vs. TAIR (Arabidopsis)
Match: AT5G03380.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 191.8 bits (486), Expect = 7.400e-49 Identity = 172/439 (39.18%), Postives = 225/439 (51.25%), Query Frame = 1
BLAST of Spo10456.1 vs. TAIR (Arabidopsis)
Match: AT5G60800.2 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 183.7 bits (465), Expect = 2.000e-46 Identity = 151/373 (40.48%), Postives = 198/373 (53.08%), Query Frame = 1
BLAST of Spo10456.1 vs. TAIR (Arabidopsis)
Match: AT2G36950.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 177.9 bits (450), Expect = 1.100e-44 Identity = 168/421 (39.90%), Postives = 215/421 (51.07%), Query Frame = 1
BLAST of Spo10456.1 vs. TAIR (Arabidopsis)
Match: AT5G63530.1 (farnesylated protein 3) HSP 1 Score: 126.7 bits (317), Expect = 2.900e-29 Identity = 143/396 (36.11%), Postives = 184/396 (46.46%), Query Frame = 1
BLAST of Spo10456.1 vs. TAIR (Arabidopsis)
Match: AT5G50740.3 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 106.7 bits (265), Expect = 3.100e-23 Identity = 115/367 (31.34%), Postives = 170/367 (46.32%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10456.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10456.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10456.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10456.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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