Spo10496 (gene)

Overview
NameSpo10496
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 26783963 .. 26784724 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAACACTCCAAAAAAACCTCTCCAAATCCCCAATTAAATTCAATCATCTTCTTTCATGCCCTCTTCTTCGTCTTCTTCAACTCTGACTCAACAGCGACGCTTCAAATTCAAATTACTCTACGCTTTCTTCTCCCTCATTTTCTCTCTCCTCTCCCGTCTCTTTGATTCTCTAATCTTCTCTCTCTCCTCCGCCATGGACAACCTCTTCGATCCCGACGACTTTCTCTCCGTCGGTAACGACGCCACCACCACTTCCAACAACGACGATGGAGATGACGACGACGGTGATCTTCTCTACCCGCAGTCTCGCCGCCGCCGACGTCGTCTTCATTCTTCTCCTCCGTCATCGTCGTCTACCTCAACTCTTTATCTTCGCAGTGATCGTCTCTTTCTCGTCTGCTACAAGTATTCAATTCATACTTTTTCAGTTGATTTGTTTTGTTATTTGAGTAATGTGGATTCAGTTGAGCTGAATTGAGTTTAATTTAACTGAATTAATGTTTACAGGTGGTGGAAAGATGCGAGGGAGGGGTGCTTGGGTAGTAAGGGTGAAATTAAAGGCGATCGTTATACTACGGCGGAGTTGTCAGATGATGAGAATAAGAGGGAGAGTGATTCTGATGATGAGTTTGTTTTGAATTTGAAGAGAGAAGTGGATGATGATGACGATAATGGTGGCGACGATAAGGGCAAGGGTTTTTCTGGCCGGGAGTACGCTTTGATTACTGAAAGCATGTGGTTTACGGGGCTGAAATGGTGA

mRNA sequence

ATCAACACTCCAAAAAAACCTCTCCAAATCCCCAATTAAATTCAATCATCTTCTTTCATGCCCTCTTCTTCGTCTTCTTCAACTCTGACTCAACAGCGACGCTTCAAATTCAAATTACTCTACGCTTTCTTCTCCCTCATTTTCTCTCTCCTCTCCCGTCTCTTTGATTCTCTAATCTTCTCTCTCTCCTCCGCCATGGACAACCTCTTCGATCCCGACGACTTTCTCTCCGTCGGTAACGACGCCACCACCACTTCCAACAACGACGATGGAGATGACGACGACGGTGATCTTCTCTACCCGCAGTCTCGCCGCCGCCGACGTCGTCTTCATTCTTCTCCTCCGTCATCGTCGTCTACCTCAACTCTTTATCTTCGCAGTGATCGTCTCTTTCTCGTCTGCTACAAGTGGTGGAAAGATGCGAGGGAGGGGTGCTTGGGTAGTAAGGGTGAAATTAAAGGCGATCGTTATACTACGGCGGAGTTGTCAGATGATGAGAATAAGAGGGAGAGTGATTCTGATGATGAGTTTGTTTTGAATTTGAAGAGAGAAGTGGATGATGATGACGATAATGGTGGCGACGATAAGGGCAAGGGTTTTTCTGGCCGGGAGTACGCTTTGATTACTGAAAGCATGTGGTTTACGGGGCTGAAATGGTGA

Coding sequence (CDS)

ATGCCCTCTTCTTCGTCTTCTTCAACTCTGACTCAACAGCGACGCTTCAAATTCAAATTACTCTACGCTTTCTTCTCCCTCATTTTCTCTCTCCTCTCCCGTCTCTTTGATTCTCTAATCTTCTCTCTCTCCTCCGCCATGGACAACCTCTTCGATCCCGACGACTTTCTCTCCGTCGGTAACGACGCCACCACCACTTCCAACAACGACGATGGAGATGACGACGACGGTGATCTTCTCTACCCGCAGTCTCGCCGCCGCCGACGTCGTCTTCATTCTTCTCCTCCGTCATCGTCGTCTACCTCAACTCTTTATCTTCGCAGTGATCGTCTCTTTCTCGTCTGCTACAAGTGGTGGAAAGATGCGAGGGAGGGGTGCTTGGGTAGTAAGGGTGAAATTAAAGGCGATCGTTATACTACGGCGGAGTTGTCAGATGATGAGAATAAGAGGGAGAGTGATTCTGATGATGAGTTTGTTTTGAATTTGAAGAGAGAAGTGGATGATGATGACGATAATGGTGGCGACGATAAGGGCAAGGGTTTTTCTGGCCGGGAGTACGCTTTGATTACTGAAAGCATGTGGTTTACGGGGCTGAAATGGTGA

Protein sequence

MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVGNDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWKDAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKGFSGREYALITESMWFTGLKW
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10496.1Spo10496.1mRNA


Homology
[Close]
BLAST of Spo10496.1 vs. NCBI nr
Match: gi|902238425|gb|KNA25187.1| (hypothetical protein SOVF_009050 [Spinacia oleracea])

HSP 1 Score: 387.9 bits (995), Expect = 1.100e-104
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

		  

Query: 1   MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVG 60
           MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVG
Sbjct: 1   MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVG 60

Query: 61  NDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWK 120
           NDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWK
Sbjct: 61  NDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWK 120

Query: 121 DAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKG 180
           DAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKG
Sbjct: 121 DAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKG 180

Query: 181 FSGREYALITESMWFTGLKW 201
           FSGREYALITESMWFTGLKW
Sbjct: 181 FSGREYALITESMWFTGLKW 200
[Close]
BLAST of Spo10496.1 vs. NCBI nr
Match: gi|870860195|gb|KMT11558.1| (hypothetical protein BVRB_5g108750 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.6 bits (244), Expect = 1.300e-17
Identity = 85/189 (44.97%), Postives = 104/189 (55.03%), Query Frame = 1 

		  

Query: 1   MPSSSSSSTLTQQR--------RFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFD 60
           MPSSSSS+   QQ+        RFK + L AFF LIFSLLS LF+  + SLSSAMD+ F 
Sbjct: 1   MPSSSSSALTQQQQQQQQQQRHRFKLQKLNAFFLLIFSLLSCLFNFFLLSLSSAMDDNFY 60

Query: 61  PDDFLSVGNDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLF 120
            DDFL V  D          DD D       + RRRRR  SSPP       L L  DRLF
Sbjct: 61  LDDFLPVDLD----------DDYDAS----HALRRRRRRLSSPP-------LSLHHDRLF 120

Query: 121 LVCYKWWKDAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVL--NLKREVDDDD 180
           LV Y+WW DA + C   KGE  G  Y+ +    DE+KRE DS ++ +L  + KRE D  +
Sbjct: 121 LVSYQWWNDASKECWCGKGENNGVLYSVSSHDSDEDKREYDSYEDDILSDDDKRECDSGE 168
[Close]
BLAST of Spo10496.1 vs. NCBI nr
Match: gi|731333119|ref|XP_010677561.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.5 bits (153), Expect = 4.700e-7
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 

		  

Query: 142 ELSDDENKRESDS--------DDEFVLNLKREVDDDDDNGGDDKGKGFSGREYALITESM 201
           ++  DE+ RE DS        +D+ +LNLKREVD+D+     DKG+GFSGREYALI+E+M
Sbjct: 143 DVLSDEDDRECDSGEDDIFSYEDDILLNLKREVDNDN----IDKGEGFSGREYALISETM 202
[Close]
BLAST of Spo10496.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S241_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009050 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 7.600e-105
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

		  

Query: 1   MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVG 60
           MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVG
Sbjct: 1   MPSSSSSSTLTQQRRFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFDPDDFLSVG 60

Query: 61  NDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWK 120
           NDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWK
Sbjct: 61  NDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLFLVCYKWWK 120

Query: 121 DAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKG 180
           DAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKG
Sbjct: 121 DAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVLNLKREVDDDDDNGGDDKGKG 180

Query: 181 FSGREYALITESMWFTGLKW 201
           FSGREYALITESMWFTGLKW
Sbjct: 181 FSGREYALITESMWFTGLKW 200
[Close]
BLAST of Spo10496.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHM7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108750 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.200e-18
Identity = 85/189 (44.97%), Postives = 104/189 (55.03%), Query Frame = 1 

		  

Query: 1   MPSSSSSSTLTQQR--------RFKFKLLYAFFSLIFSLLSRLFDSLIFSLSSAMDNLFD 60
           MPSSSSS+   QQ+        RFK + L AFF LIFSLLS LF+  + SLSSAMD+ F 
Sbjct: 1   MPSSSSSALTQQQQQQQQQQRHRFKLQKLNAFFLLIFSLLSCLFNFFLLSLSSAMDDNFY 60

Query: 61  PDDFLSVGNDATTTSNNDDGDDDDGDLLYPQSRRRRRRLHSSPPSSSSTSTLYLRSDRLF 120
            DDFL V  D          DD D       + RRRRR  SSPP       L L  DRLF
Sbjct: 61  LDDFLPVDLD----------DDYDAS----HALRRRRRRLSSPP-------LSLHHDRLF 120

Query: 121 LVCYKWWKDAREGCLGSKGEIKGDRYTTAELSDDENKRESDSDDEFVL--NLKREVDDDD 180
           LV Y+WW DA + C   KGE  G  Y+ +    DE+KRE DS ++ +L  + KRE D  +
Sbjct: 121 LVSYQWWNDASKECWCGKGENNGVLYSVSSHDSDEDKREYDSYEDDILSDDDKRECDSGE 168
The following BLAST results are available for this feature:
BLAST of Spo10496.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902238425|gb|KNA25187.1|1.1e-104100.hypothetical protein SOVF_0090... [more]
gi|870860195|gb|KMT11558.1|1.3e-1744.9hypothetical protein BVRB_5g10... [more]
gi|731333119|ref|XP_010677561.1|4.7e-753.7PREDICTED: ubiquitin carboxyl-... [more]
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BLAST of Spo10496.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9S241_SPIOL7.6e-105100.Uncharacterized protein OS=Spi... [more]
A0A0J8CHM7_BETVU9.2e-1844.9Uncharacterized protein OS=Bet... [more]
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BLAST of Spo10496.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10496.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005634 nucleus
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo027400.65Barchart | Table