Spo10534 (gene)

Overview
NameSpo10534
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_120 : 140069 .. 141328 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTTGCGTTTAACAAAGAGATAGATCAAACTATTGCAGTTGTTGTCCAGATTACAATGAATGGTGGGGTTATTGGGTATTACAGATTGATGCTAGTTAGTCAGGTAAACAAACAGGCTTGACCTTTTCTTTTGAAAGCTCTCCTGTTATATTTACTTTGTTGTATACTGTATGTTTCTTGGAGTAGCCTACTTGGTATTTTGTTAAAAAGTTCGACTATTTTGGCAGAAACTTACGAGTGTTAGAGAATCCGACACGAGTACTTGAGGTGAAATGAAGAATCCGAATTACATTAGCATAATAGCATGTGATAATTTGAACTAAAAGGACAACTTTCAAGGATTTTCCTTGTCGTTTTGACTTGTATGTTAGTTTACCTCACAACAAACCCAGTTGGTTTGAAGGGTGAATAGTTAATGGATATGTTGTCAGAACATGTATCTTGTACCTGTGAGCATAGCATGTGATGGAATTAATTAAAAGGGGAAACAGTAAAACATGGGACTATGGGAGGTATATTGAGTGATGGGCTTTAACAAATACAGTATAGAGAAGCTGCCTGGTCCACGCACTTGTAAATTGTAATTTTTGCTGTCTGTGGAAACACAATGTTGAAATGTCTGATGTGAGTTTATGGTTGGGAGCATGAGGAGACTTGGTCATGTTTCTTCTATGTTTTGCTCTAGAATATTTATAATTTCATGATACTTTATAGTTCTCGGATTATCTGAACTAATTTTCTACTGCTTCTGGCTGTGTAACCTGTTATGAACGATCCAGAACTCTTTGAAAATTAATGTCAGTTTCAATTTTTTGAAAGTATGCATCTATGTTGGATTTGCGCCATTTGCATAAAGTTTTGTTATTGCTGGTGAGGATGGAATTGAGTTGTTACTTGTCAGCTTTCTTACTCCTTTTCTGGTGCCATATTGCTATAGTGCTATTAACTAATATTCTGTTTAGTGAGGGTAACTGTTTTTATTTGCTTTTGTAGGCTGAGTATTTCCGCCAGTTGCTTAAGCCTGTCACGTAGGCTAACAAAGCAATTTTGTGGGAAATTTGGGAGGGGCTGTCTTCATTCATGCTCTTGCAATCTGATAAGGCAGTAAGAAACCATTTTCTGTGTTCTTTTGTAGGCTGAGTAATCCCATTACTTGCTTAAGCCTTTAAATAGTCAGAGTAAAGCGATCTCGTGGGATATTGGGACGTGTACTGCCTTCATTATTGGTTATGGAGGCAGGGACATGAATAAATAA

mRNA sequence

ATGTTCGTTGCGTTTAACAAAGAGATAGATCAAACTATTGCAGTTGTTGTCCAGATTACAATGAATGGTGGGGTTATTGGGTATTACAGATTGATGCTAGTTAGTCAGGCTGAGTATTTCCGCCAGTTGCTTAAGCCTCCTTTAAATAGTCAGAGTAAAGCGATCTCGTGGGATATTGGGACGTGTACTGCCTTCATTATTGGTTATGGAGGCAGGGACATGAATAAATAA

Coding sequence (CDS)

ATGTTCGTTGCGTTTAACAAAGAGATAGATCAAACTATTGCAGTTGTTGTCCAGATTACAATGAATGGTGGGGTTATTGGGTATTACAGATTGATGCTAGTTAGTCAGGCTGAGTATTTCCGCCAGTTGCTTAAGCCTCCTTTAAATAGTCAGAGTAAAGCGATCTCGTGGGATATTGGGACGTGTACTGCCTTCATTATTGGTTATGGAGGCAGGGACATGAATAAATAA

Protein sequence

MFVAFNKEIDQTIAVVVQITMNGGVIGYYRLMLVSQAEYFRQLLKPPLNSQSKAISWDIGTCTAFIIGYGGRDMNK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10534.1Spo10534.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo10534.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10534.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10534.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10534.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006816 calcium ion transport
biological_process GO:0010014 meristem initiation
biological_process GO:0010332 response to gamma radiation
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006302 double-strand break repair
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006979 response to oxidative stress
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0010050 vegetative phase change
biological_process GO:0009630 gravitropism
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010073 meristem maintenance
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0007267 cell-cell signaling
biological_process GO:0006486 protein glycosylation
biological_process GO:0008152 metabolic process
biological_process GO:0006810 transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006857 oligopeptide transport
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
RNA-Seq Expression