Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTATACTAACTTTCCTTTTTCAATTTTGTGTCGTTCCCTTTTTACCCCTCAATCCTCCTTTGTGTATTTATATATACCAAACCAAACCTCAAACCCAAAAAAAATCCTATCATTTAGAAAAACAACCCATCCAAAAAAAACAACAACCACCGCCACCTAAAAGAATGACAGCGCCGCCATCTAAAACACAAAGAACATGCTCACAGTGCGGCCACAACGGCCACAACGCTAGAACTTGTACTGAACTTTCCGGTGCTCTTCCACCTCCTACACCTGGATTCATGCTATTCGGTGTCAGATTAACCGCCGCAGAAGGCTCTGTTTCGCCTTCTTCACCGCCGATTTCTCCGTCGTCTTCATCGTTGTCGTCGTCTTCGTTCTTTCGTAAGAGTATGAGTATGAATAATCTTTCTCAATATGAACAACGACAACAAGATCAACACAATTTTCCCCTCGATTCTTCTAATATTAATAACGTTGTTCCTTCTGGCTATGCTTCCGACGACGCTCTTCACGCTTCTGGTTGTCAAACCCGGGACCGCGAACGCAAAAGAGGTATAATGTTTTCTCTATTTATTTAATTTTAATAAAATACGTGTTAATTTTTTTCATTGGTTAGGATACGTGGGAGTTAAGAATCGTAAATTGCAGATATTTTGTTAATTTCTAATTGGTTATGGTGATTTTTAATTAATTAAATTAATTAATTAATTGATCAAGTCATTGGTATAAATGAATCCATTTATGTACGATTTTGCATAAAGTTAGCGTTAGAATCCATCTTCTTTTTTAACAAATCAATTTTATTGCAGGGTTTGTACTTTGATTGATTGAAGGTTCATATTGGATTATACCCAAATGACAATAGTAAAATGTAATTTAACAATGTTTGACACAATGTTTGACAGTTTAGATTTTAGAGTTTAGAGTTTAGAGTTTAGAGTTTAGAGTTTAGAACACATTCATGACTTGTTAAATTAAGTCAAATGTAATTTAACAATGTTTGACAGATTAGTGTTTAGAGTTTACTTTAGAGTATACATNGAGTTTAGAGTTTAGAGTTTAGAGTTTAGAGTTTAGAGTTTAGAACACATTCATGACTTGTTAAATGTAATTTAACAATGTTTGAACACATTCATGACTTGTTAAATTAAGTCAAATGTAATTTAACAATGTTTGACAGATTAGTGTTTAGAGTTTACTTTAGAACTGTACTACATGTACCTTACCTATTTGGATTGTACTTTACCTATTTGGACTGTAGAATCGAGTTGAGTTTTGATACACCTAAACCTACCAACACTTCAAAATTTCATAGAAATGTTTTGCAACTATGTAGGAACTCCCTGGACAGAAGAAGAGCACAAACTATTTTTGATGGGGTTGGATAAGGTAGGAAAAGGAGATTGGAGAGGGATATCTAGGAACTATGTCAAGACAAGAACACCAACCCAAGTTGCTAGTCATGCTCAAAAGTATTATCTCCGGCGAACCAACCAAAACCGCCGTCGCCGTCGCTCCAGTCTCTTTGACATCACTACTGATACGGTGAGCTAACTTATTTTTGTTCTCAGTTTTGCTTGGTTGACAAATTACCATGAGAATTTTATTTTTTCTTATGCAATCACATTTTGTCCTCTTGTGTAAGGAGGTAGGAAGTAGCTTTCCATGAAAAGTTTTTAAGCCTTTTTCTTTTATTTTCTTTGTTTGATTGTTTTTTTTGTTGGATACTAAAACAAGTCAAGTTTTGCACATCTACTACTCTATTTAATATTCTAGCTTCCTTGATAGTATTGCTAAATAATAATAGAACTTGATTTGAGGCCGGCTAATATAAATCATTATATTTTTTTATCTTACATTTAAGTAGTCAGAATAAGTTTAGTTATGTCAACCACTTTTGTATAAAATTGTTATGTGTCATTTTTGAGAATAGAACAAAAATGTTGTTTTCCATAATCATAGAGTAGCTACTAATTTAATGTCGAGAATGCTTTCTTTTTATAGTCGTGGATTCAAGGTCATTTATATAAATCTATAGATTATTATACACTCAACTCCGTACTTTATATTGCTTGTATCATTTTAATCAACTCATGTTATTCTATATTATCTTTCTTTATGGTGAGATATTTTTTTTATTGTTCATTATATAAAATAAAATGCACTATCACGTTTCGATTAAGGCTAATCAGATGTGAGCTCCTCCTTAATTAGACGGAGTTCTTGATAGAAATTTGAGGACGCACCCGGAAGTTTTAACGTACCCGTATAATAAAATTGTATTTTGATTGTCTCACCCTCTCAACTTATGCATACAACTTATTTATAGTTGGTGTATCCTACTTTCTAGATTTTTCTNACCCTCTCAACTTATGCATACAACTTATTTATAGTTGGTGTATCCTACTTTCTAGATTTTTCTACCCTTATTACATAATTCCACATCACATATCCTAGATGCTTCTAGATATGATTTTTCATTACTCTGTTTGTTGATCAATGTTTTGAACTATTGTAGAAGTTTGTGATCCTAGATGTTTATATTTTTATTTGTTCCAAGTTTGTTAAATTAAACCATGTTATTCTTGGAAATAATTTTTTGCAGTTGAGCCGTTCATCAAGTGAGAGTCAATTAGCAAGCCTAGACACAACTTGTCATCAACTAAAGGCAAGTGCACTTCATCAAGCAACACAATTTCCTTCCCCTTACCCTCCTTCATTTTCAACCAAACACAGCCGTTCAATTCCGGTCCCACCTTCCTCAAAGATGGCCAGTCTTAATCTAAACCAATCACCAACAACGTCGTCACCATCATCATCAACATCAACCTACAATACTAACAACAAAGAAATAGAATATGAACCATTCCTTTCCCTCAAGCTCTCACAACAAGCACCGTCAGATGAGGAATCGTCGAGGCGATCCCCCACCTTTCGAGGATTCAACGACAGTGGTGGAGATAGCATTATTAGTGTTGCTTGAAAGAGAATAATAAAAAGAATATGATTATGAAGATAATGATTAGATTACATATTTGTTTGGGTTGTAAAGGGTGGTGGTGATGAAGATAAGTTTCTTTAGATCATATCATATTACTATATTAGTATCATCATATATAATTAATCATATTATAGTCATGTGATTAGTCAAAATGCTATGATTTCAGATATGATTTTTGCAAGTATTTTTTAGGTGATTCCTTTTGGTTGTACAGGGCAAGAGGTCCAAAGTGATGCAATATGTGGACACAAGTTGAGTGAACATCGTTTTCTTTATGTTGTTTTTGCCTTTGTATTCACTCTTAATTTTGTTTTGTTTTGTATTTTGGTAGGATTTTTTTAATTTTTTATATAATATCGTGTCACG TTTTTATACTAACTTTCCTTTTTCAATTTTGTGTCGTTCCCTTTTTACCCCTCAATCCTCCTTTGTGTATTTATATATACCAAACCAAACCTCAAACCCAAAAAAAATCCTATCATTTAGAAAAACAACCCATCCAAAAAAAACAACAACCACCGCCACCTAAAAGAATGACAGCGCCGCCATCTAAAACACAAAGAACATGCTCACAGTGCGGCCACAACGGCCACAACGCTAGAACTTGTACTGAACTTTCCGGTGCTCTTCCACCTCCTACACCTGGATTCATGCTATTCGGTGTCAGATTAACCGCCGCAGAAGGCTCTGTTTCGCCTTCTTCACCGCCGATTTCTCCGTCGTCTTCATCGTTGTCGTCGTCTTCGTTCTTTCGTAAGAGTATGAGTATGAATAATCTTTCTCAATATGAACAACGACAACAAGATCAACACAATTTTCCCCTCGATTCTTCTAATATTAATAACGTTGTTCCTTCTGGCTATGCTTCCGACGACGCTCTTCACGCTTCTGGTTGTCAAACCCGGGACCGCGAACGCAAAAGAGGAACTCCCTGGACAGAAGAAGAGCACAAACTATTTTTGATGGGGTTGGATAAGGTAGGAAAAGGAGATTGGAGAGGGATATCTAGGAACTATGTCAAGACAAGAACACCAACCCAAGTTGCTAGTCATGCTCAAAAGTATTATCTCCGGCGAACCAACCAAAACCGCCGTCGCCGTCGCTCCAGTCTCTTTGACATCACTACTGATACGTTGAGCCGTTCATCAAGTGAGAGTCAATTAGCAAGCCTAGACACAACTTGTCATCAACTAAAGGCAAGTGCACTTCATCAAGCAACACAATTTCCTTCCCCTTACCCTCCTTCATTTTCAACCAAACACAGCCGTTCAATTCCGGTCCCACCTTCCTCAAAGATGGCCAGTCTTAATCTAAACCAATCACCAACAACGTCGTCACCATCATCATCAACATCAACCTACAATACTAACAACAAAGAAATAGAATATGAACCATTCCTTTCCCTCAAGCTCTCACAACAAGCACCGTCAGATGAGGAATCGTCGAGGCGATCCCCCACCTTTCGAGGATTCAACGACAGTGGTGGAGATAGCATTATTAGTGTTGCTTGAAAGAGAATAATAAAAAGAATATGATTATGAAGATAATGATTAGATTACATATTTGTTTGGGTTGTAAAGGGTGGTGGTGATGAAGATAAGTTTCTTTAGATCATATCATATTACTATATTAGTATCATCATATATAATTAATCATATTATAGTCATGTGATTAGTCAAAATGCTATGATTTCAGATATGATTTTTGCAAGTATTTTTTAGGTGATTCCTTTTGGTTGTACAGGGCAAGAGGTCCAAAGTGATGCAATATGTGGACACAAGTTGAGTGAACATCGTTTTCTTTATGTTGTTTTTGCCTTTGTATTCACTCTTAATTTTGTTTTGTTTTGTATTTTGGTAGGATTTTTTTAATTTTTTATATAATATCGTGTCACG ATGACAGCGCCGCCATCTAAAACACAAAGAACATGCTCACAGTGCGGCCACAACGGCCACAACGCTAGAACTTGTACTGAACTTTCCGGTGCTCTTCCACCTCCTACACCTGGATTCATGCTATTCGGTGTCAGATTAACCGCCGCAGAAGGCTCTGTTTCGCCTTCTTCACCGCCGATTTCTCCGTCGTCTTCATCGTTGTCGTCGTCTTCGTTCTTTCGTAAGAGTATGAGTATGAATAATCTTTCTCAATATGAACAACGACAACAAGATCAACACAATTTTCCCCTCGATTCTTCTAATATTAATAACGTTGTTCCTTCTGGCTATGCTTCCGACGACGCTCTTCACGCTTCTGGTTGTCAAACCCGGGACCGCGAACGCAAAAGAGGAACTCCCTGGACAGAAGAAGAGCACAAACTATTTTTGATGGGGTTGGATAAGGTAGGAAAAGGAGATTGGAGAGGGATATCTAGGAACTATGTCAAGACAAGAACACCAACCCAAGTTGCTAGTCATGCTCAAAAGTATTATCTCCGGCGAACCAACCAAAACCGCCGTCGCCGTCGCTCCAGTCTCTTTGACATCACTACTGATACGTTGAGCCGTTCATCAAGTGAGAGTCAATTAGCAAGCCTAGACACAACTTGTCATCAACTAAAGGCAAGTGCACTTCATCAAGCAACACAATTTCCTTCCCCTTACCCTCCTTCATTTTCAACCAAACACAGCCGTTCAATTCCGGTCCCACCTTCCTCAAAGATGGCCAGTCTTAATCTAAACCAATCACCAACAACGTCGTCACCATCATCATCAACATCAACCTACAATACTAACAACAAAGAAATAGAATATGAACCATTCCTTTCCCTCAAGCTCTCACAACAAGCACCGTCAGATGAGGAATCGTCGAGGCGATCCCCCACCTTTCGAGGATTCAACGACAGTGGTGGAGATAGCATTATTAGTGTTGCTTGA MTAPPSKTQRTCSQCGHNGHNARTCTELSGALPPPTPGFMLFGVRLTAAEGSVSPSSPPISPSSSSLSSSSFFRKSMSMNNLSQYEQRQQDQHNFPLDSSNINNVVPSGYASDDALHASGCQTRDRERKRGTPWTEEEHKLFLMGLDKVGKGDWRGISRNYVKTRTPTQVASHAQKYYLRRTNQNRRRRRSSLFDITTDTLSRSSSESQLASLDTTCHQLKASALHQATQFPSPYPPSFSTKHSRSIPVPPSSKMASLNLNQSPTTSSPSSSTSTYNTNNKEIEYEPFLSLKLSQQAPSDEESSRRSPTFRGFNDSGGDSIISVA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10579.1 vs. NCBI nr
Match: gi|902208027|gb|KNA15829.1| (hypothetical protein SOVF_094630 [Spinacia oleracea]) HSP 1 Score: 625.5 bits (1612), Expect = 5.000e-176 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1
BLAST of Spo10579.1 vs. NCBI nr
Match: gi|731344322|ref|XP_010683349.1| (PREDICTED: transcription factor MYB1R1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 382.9 bits (982), Expect = 5.700e-103 Identity = 240/345 (69.57%), Postives = 261/345 (75.65%), Query Frame = 1
BLAST of Spo10579.1 vs. NCBI nr
Match: gi|1021518197|ref|XP_016202602.1| (PREDICTED: transcription factor MYB1R1 [Arachis ipaensis]) HSP 1 Score: 234.6 bits (597), Expect = 2.500e-58 Identity = 165/343 (48.10%), Postives = 196/343 (57.14%), Query Frame = 1
BLAST of Spo10579.1 vs. NCBI nr
Match: gi|563425577|gb|AHB59602.1| (putative MYB-related protein 16 [Arachis hypogaea]) HSP 1 Score: 231.5 bits (589), Expect = 2.100e-57 Identity = 167/349 (47.85%), Postives = 202/349 (57.88%), Query Frame = 1
BLAST of Spo10579.1 vs. NCBI nr
Match: gi|1012169280|ref|XP_015965321.1| (PREDICTED: transcription factor MYB1R1 [Arachis duranensis]) HSP 1 Score: 231.5 bits (589), Expect = 2.100e-57 Identity = 167/349 (47.85%), Postives = 202/349 (57.88%), Query Frame = 1
BLAST of Spo10579.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9Z7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_094630 PE=4 SV=1) HSP 1 Score: 625.5 bits (1612), Expect = 3.500e-176 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1
BLAST of Spo10579.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EVH9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155280 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 3.900e-103 Identity = 240/345 (69.57%), Postives = 261/345 (75.65%), Query Frame = 1
BLAST of Spo10579.1 vs. UniProtKB/TrEMBL
Match: V5T688_ARAHY (Putative MYB-related protein 16 OS=Arachis hypogaea GN=MYB16 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.500e-57 Identity = 167/349 (47.85%), Postives = 202/349 (57.88%), Query Frame = 1
BLAST of Spo10579.1 vs. UniProtKB/TrEMBL
Match: V7CHC5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G078600g PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 4.300e-57 Identity = 170/356 (47.75%), Postives = 201/356 (56.46%), Query Frame = 1
BLAST of Spo10579.1 vs. UniProtKB/TrEMBL
Match: A0A0L9TFI1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan647s001400 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 9.500e-57 Identity = 165/335 (49.25%), Postives = 193/335 (57.61%), Query Frame = 1
BLAST of Spo10579.1 vs. ExPASy Swiss-Prot
Match: MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 9.200e-37 Identity = 123/267 (46.07%), Postives = 152/267 (56.93%), Query Frame = 1
BLAST of Spo10579.1 vs. ExPASy Swiss-Prot
Match: DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.800e-24 Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 1
BLAST of Spo10579.1 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.500e-7 Identity = 80/315 (25.40%), Postives = 132/315 (41.90%), Query Frame = 1
BLAST of Spo10579.1 vs. ExPASy Swiss-Prot
Match: MYBH_DICDI (Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 4.900e-6 Identity = 23/65 (35.38%), Postives = 43/65 (66.15%), Query Frame = 1
BLAST of Spo10579.1 vs. TAIR (Arabidopsis)
Match: AT1G70000.1 (myb-like transcription factor family protein) HSP 1 Score: 216.9 bits (551), Expect = 1.900e-56 Identity = 154/324 (47.53%), Postives = 184/324 (56.79%), Query Frame = 1
BLAST of Spo10579.1 vs. TAIR (Arabidopsis)
Match: AT3G16350.1 (Homeodomain-like superfamily protein) HSP 1 Score: 159.5 bits (402), Expect = 3.600e-39 Identity = 103/227 (45.37%), Postives = 130/227 (57.27%), Query Frame = 1
BLAST of Spo10579.1 vs. TAIR (Arabidopsis)
Match: AT5G47390.1 (myb-like transcription factor family protein) HSP 1 Score: 159.5 bits (402), Expect = 3.600e-39 Identity = 116/289 (40.14%), Postives = 153/289 (52.94%), Query Frame = 1
BLAST of Spo10579.1 vs. TAIR (Arabidopsis)
Match: AT1G74840.1 (Homeodomain-like superfamily protein) HSP 1 Score: 146.0 bits (367), Expect = 4.100e-35 Identity = 98/211 (46.45%), Postives = 124/211 (58.77%), Query Frame = 1
BLAST of Spo10579.1 vs. TAIR (Arabidopsis)
Match: AT5G61620.1 (myb-like transcription factor family protein) HSP 1 Score: 144.1 bits (362), Expect = 1.600e-34 Identity = 94/206 (45.63%), Postives = 123/206 (59.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10579.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10579.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10579.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo10579.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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