Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAATTATAAAATCAAAAAATCATAATAAATCCCTGCCAAATTGCCAGCGCAACAAATCTTTACGTGTCTGAACCCTAGATGACCGTCGATGAAGTGGACCCCTAAATAATTTCAACCCAATTTACCAATCTAACGGCCGTTAATTCGAGTTGTATGATTGCTTACTGTAGTACTGTAACACCGGATCAGATTTTATAAGTAGTCCGTAGTACTGTTACTCACTCAAAAAGTCACTCTTCTTCTCAAGTCTCAACTCCCGAGGACTACCCCCATTCTCTCTCTCCTCCTCCATTGAAGCTTCATCTTCAAGCTACGCGAACTTCGAATATCACAACCATATTATAATAAACACGATCATAAATTTTATCATATAGTATTGTGTATTGAAATTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTGGTGTTGTTGTACCGAGATTTTGAATGGTGTGTTGGATGTTGGAGTTTTAAAAAAGTGCTATGGATCCGCAGACGACGCTGATGAATGAGACGCCGTCGTTTAACTTGTCGGAGATCTGGCCGATTCCGATGAACGGCGCCGCTGCGGCGGGATTGGACCTCAGGAGAAGCCCCTTTGGCCCGAGTTTGGCCCGGTTTGTTGACCCTGGACCAAATCTGGAAGTTTCTGGGAGCGACGGCGGAGGTTGTGGTGCGGCGAGGAAGAGGAGAGAGAATGTTGAGGATGATGATTCCGGCACGGGCGTGTGCAATGGCATGGTATTTCTATTTTCTTTTTCTTTCTTTTTTCTTCTTTTTATTTGAACTTTTCTATTTGCAATTTGAAATAAATTGTTTGTTTTGATTAAATAGAAAAATATGGAATGGAAAAAATGGAGAAAATTATTGAAAGGCAATATTCACTTTTTGTTGCCATGTTCATATTTGGTTGAATTTTGGTTATTTGTACTCCGTATTATTTCTGAACTTGGATTTTTTTTTTCATCAACGATAATTAATGAATGAATTTTTAAATTTTTTGTTATAGGTTTGACAACGACTTAAATTACTAAATTAGTAATCAGAGTTAAATTAGTAATCATAGAGTTTTGTAATTGTATTGCACAGCCCACACTGACTTAAACTGGTAATCATAGAGTTCTGTAATTGTATTGCACTGAGTTGGGTAATCCCTCAAATGCAAATTCTTGTATAAGACGGTCCAACAGCCATAGATATATTAGTAGTTACTAGTTAGATATTGTCAAGATTTTATTCAATATTGAGATTGTGACCGTACTCCGTAGTTAATTTAATTGAAGTGAAGTTAAATAGTTATAGGAGCAAAGTCAATAGGTGTCAATTAAGTAAATTGGACTGTGAATGGCAATTTCTATAATGAACACTGATAGTTGGTTGTGTCATCGTTGTCGAATCTGTCATCTATGAATTGCTCAAATGTTCTTATCTGGTTTTTGTTTTGTTGATCTGTATTTATGAAATAGAGAGCACTTTACAATCGACTTTCTGAAATTGCAGAGTGATGCGGATGGTAAACGGCTCAAATCAACAGGATCCGAAGATGAAAATCAGGATCAGAAAGGTGGTAATGAAACAAATTCTGGAAAGGGACCAGAACAAAAGAGTAAGCCAGTATCTGATCCATCAAAGGACTATATTCATGTGCGAGCAAGGAGAGGTCAAGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAATTTAACTGTTGTAAGGGAATTGTTTTTGCTTATTTGACAGGCCCTTTTCGCAAAATTTCTTTAGCTAGAGTGTTATATTAACCTCATGGAACAAATAATATTACGTGATCATTTAAGGAGATCGGAAAAATCCCTGTATTTGTCATCCTTTCAATAAGCCATATGTTGTCAGACATCTAGGAATATGATACAGTTGATGAGATTTTAGATATTTTTGTTGGCAGGCTAGAAGAGAAAAGATCAGTGAGAGGATGAGAATATTACAGGATCTTGTCCCTGGGTGTAATAAGGTCCGATTTCTTTCCTTACAGTGTTTTCCACTTATTGTTGTTATCATTGGAAGGCTGATGAATTATCGATCTGTCATACTTATTTCGAAATGGCATTAGTCGTTCTGTATTCTCAATTAGGCAGTCCACTTTTCTCTTAAAGCATCTTATCCAGTTACACAGTGAATCCTATTATGGAGTATTGAATTTGTGGGATTCATGGTGCTTGAGTTTTCTGGATATTTTTTGAGATGTTCATTTTCTTGACCAAACTTCTGGGTTCAGGTCATTGGCAAGGCACTGGTACTTGACGAGATCATAAATTATATCCAATCATTACAGCGTCAAGTTGAGGTGCGCAACTGCTGAAACTGCTGGTTGTATGTTCTTTATGTTGCCTACTCATTGAGCTTTAAAGTGAACCTTGAAATGCTTATTGCAGTTTCTTTCAATGAAATTAGAAGCTGTCAATACGAGAACCAGCCCTGGTATTGAAGGATTTCCGTCAAAAGATGTAAGTACAAACTACTGCCTCTGTAAAGAATGAGCTGGGACAAGATATTTATTAGTCAATGGATGATGGCTCCCTTTCTTGCTGCCTTTTTGAAATCGTAGATACATGTAACATTCAAAATCAATAGCTAGCAAGAATTTAAATGGCCTTAGCTTAAGAAGATCAATCAGCTCTTCCACTCATTGTGTTCCCCTGCCAATCTGAAATGTAGCATGGAATTTCCCATTTTCTAGCATATCCTGGTTTCTGACCACAGATACTCCTCTGAAGCGTTTTCTAGCTCAAGTTGCCAATTTAATAATTATGGGGGAGAATAATTGTTTGATTAGTGGCTTTTGAAGCATACTGAATCAAGTTATTTACTTGACCAGAAATTTTAATATTTAGGACTTATACGTCACTGTATTTCTTGCTTGATTCATACTTAGATGGCTACCTTGCATGTAAAAAAGATTGGAGAAATATAACCCGCGAATATATAATATTTCATACAATTAGGATATGTGGATGCAAAATCTTAAACTTCAAATCAACAATTTTTAAATCAAATCAAAAGCATAAAATAGTGTATTAGAGTTGGGCTCTTTTACTTGAAGAAACTTTTAGATACCATAGGTCTTTTGTAAGTTTTTGAGTTTTGGAAACGCGAAATGTAACCTTCTTGAGCATTTCCGCGCCTCAAGATTTCTTACCATATATGAAATTACCTTTAGTCTTCTATTTTTCCAAGCGATGGATAAAGTCTGCCATCCACCTCCAACCCCTCCCTGATAATTGCCCCTTTTTATTTTTATTTTTTTATTTTTTTATTTTTAACATGGTGTTTAAAGTTTCTTTGTTGTAGTCTGTTCTCTTATCTGCTGATCATCTCTCCACCCATTATGTTTCCCTCTTCCCTCTATGCTTTGTTTAATATTACTTCGTGTTTGAACACTACTAATGGTGGCGACAATTAACTTCACATGCTCTGTCCCATATCTAGTCCTGAAAGGCTTCTCCGAATGGGAGATTTTGTTCTCTAACATGCGAGGAATCCATCATCTGTTTAGCCTTATATTTCATGCAGATGTCTTTAATCTTTACCATGAATGTTCTCACAAATGAAGCTTCGGTAGTTTAAATTTTTTTCCTATTTGTTCCTACTTCCTCGAGTGTGTAACTGTTTAAGCATAGAGGAATTGCCACTTACTAGCATCTGTTTTCTTAGATTTGCGACCTTTTATTTTTTTTATTTTTTTTTGGCTTTTCAGTTTGGCCAACAAGCTTTTGATACTTCTGGAATGGGATATGGTTCACAAACTGCAAGAGATCAGTATGGTCGCGATACATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTTGACAGACAAACATGACAAAAGGTCACTGTTTCCAGACCGGTAATAAGATCCATTTTAGCTAGAAGTAGTTCATACTCCTTTCAGTAAATGTAATATTATACTACCAGTACCTTGTCATCAACACAGACCTTACATCGATTACTGAATCAGGCATCAAGTGTAGTCGATCTGTGTTTGTAAGAATACGTACTTCAATTCAATTTACACATGCCCTAGCTTCTTTATCACTTCGACTTCTTGCTTAATTTCTCGCCTCTTAAACCGTTCTGAAGTCTGAACTATATGTGTAGTTCTCGTTGTCGATGAATGCTTCTTGCCCGAGGTCTCAGTGTTTTAGGGTATGGCAAGGAGTTTGGGATGCATTATACCCTGGGTGTTTCCTGAAAAAAATGTTATGGTTATATGCAGGCCGTGTTTGGTACTCCGTAGTCCGTACTATATGGTTCAACTGCCCAACCAAACTCAAATGAAATGGTAGCTCATCAGCCATCAGCCATCAGCGTTCACCACCATCATTCTTACACCG ATAATTATAAAATCAAAAAATCATAATAAATCCCTGCCAAATTGCCAGCGCAACAAATCTTTACGTGTCTGAACCCTAGATGACCGTCGATGAAGTGGACCCCTAAATAATTTCAACCCAATTTACCAATCTAACGGCCGTTAATTCGAGTTGTATGATTGCTTACTGTAGTACTGTAACACCGGATCAGATTTTATAAGTAGTCCGTAGTACTGTTACTCACTCAAAAAGTCACTCTTCTTCTCAAGTCTCAACTCCCGAGGACTACCCCCATTCTCTCTCTCCTCCTCCATTGAAGCTTCATCTTCAAGCTACGCGAACTTCGAATATCACAACCATATTATAATAAACACGATCATAAATTTTATCATATAGTATTGTGTATTGAAATTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTGGTGTTGTTGTACCGAGATTTTGAATGGTGTGTTGGATGTTGGAGTTTTAAAAAAGTGCTATGGATCCGCAGACGACGCTGATGAATGAGACGCCGTCGTTTAACTTGTCGGAGATCTGGCCGATTCCGATGAACGGCGCCGCTGCGGCGGGATTGGACCTCAGGAGAAGCCCCTTTGGCCCGAGTTTGGCCCGGTTTGTTGACCCTGGACCAAATCTGGAAGTTTCTGGGAGCGACGGCGGAGGTTGTGGTGCGGCGAGGAAGAGGAGAGAGAATGTTGAGGATGATGATTCCGGCACGGGCGTGTGCAATGGCATGAGTGATGCGGATGGTAAACGGCTCAAATCAACAGGATCCGAAGATGAAAATCAGGATCAGAAAGGTGGTAATGAAACAAATTCTGGAAAGGGACCAGAACAAAAGAGTAAGCCAGTATCTGATCCATCAAAGGACTATATTCATGTGCGAGCAAGGAGAGGTCAAGCCACTGATAGCCACAGCCTTGCTGAAAGGGCTAGAAGAGAAAAGATCAGTGAGAGGATGAGAATATTACAGGATCTTGTCCCTGGGTGTAATAAGGTCATTGGCAAGGCACTGGTACTTGACGAGATCATAAATTATATCCAATCATTACAGCGTCAAGTTGAGTTTCTTTCAATGAAATTAGAAGCTGTCAATACGAGAACCAGCCCTGGTATTGAAGGATTTCCGTCAAAAGATTTTGGCCAACAAGCTTTTGATACTTCTGGAATGGGATATGGTTCACAAACTGCAAGAGATCAGTATGGTCGCGATACATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTTGACAGACAAACATGACAAAAGGTCACTGTTTCCAGACCGGTAATAAGATCCATTTTAGCTAGAAGTAGTTCATACTCCTTTCAGTAAATGTAATATTATACTACCAGTACCTTGTCATCAACACAGACCTTACATCGATTACTGAATCAGGCATCAAGTGTAGTCGATCTGTGTTTGTAAGAATACGTACTTCAATTCAATTTACACATGCCCTAGCTTCTTTATCACTTCGACTTCTTGCTTAATTTCTCGCCTCTTAAACCGTTCTGAAGTCTGAACTATATGTGTAGTTCTCGTTGTCGATGAATGCTTCTTGCCCGAGGTCTCAGTGTTTTAGGGTATGGCAAGGAGTTTGGGATGCATTATACCCTGGGTGTTTCCTGAAAAAAATGTTATGGTTATATGCAGGCCGTGTTTGGTACTCCGTAGTCCGTACTATATGGTTCAACTGCCCAACCAAACTCAAATGAAATGGTAGCTCATCAGCCATCAGCCATCAGCGTTCACCACCATCATTCTTACACCG ATGGATCCGCAGACGACGCTGATGAATGAGACGCCGTCGTTTAACTTGTCGGAGATCTGGCCGATTCCGATGAACGGCGCCGCTGCGGCGGGATTGGACCTCAGGAGAAGCCCCTTTGGCCCGAGTTTGGCCCGGTTTGTTGACCCTGGACCAAATCTGGAAGTTTCTGGGAGCGACGGCGGAGGTTGTGGTGCGGCGAGGAAGAGGAGAGAGAATGTTGAGGATGATGATTCCGGCACGGGCGTGTGCAATGGCATGAGTGATGCGGATGGTAAACGGCTCAAATCAACAGGATCCGAAGATGAAAATCAGGATCAGAAAGGTGGTAATGAAACAAATTCTGGAAAGGGACCAGAACAAAAGAGTAAGCCAGTATCTGATCCATCAAAGGACTATATTCATGTGCGAGCAAGGAGAGGTCAAGCCACTGATAGCCACAGCCTTGCTGAAAGGGCTAGAAGAGAAAAGATCAGTGAGAGGATGAGAATATTACAGGATCTTGTCCCTGGGTGTAATAAGGTCATTGGCAAGGCACTGGTACTTGACGAGATCATAAATTATATCCAATCATTACAGCGTCAAGTTGAGTTTCTTTCAATGAAATTAGAAGCTGTCAATACGAGAACCAGCCCTGGTATTGAAGGATTTCCGTCAAAAGATTTTGGCCAACAAGCTTTTGATACTTCTGGAATGGGATATGGTTCACAAACTGCAAGAGATCAGTATGGTCGCGATACATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTTGACAGACAAACATGA MDPQTTLMNETPSFNLSEIWPIPMNGAAAAGLDLRRSPFGPSLARFVDPGPNLEVSGSDGGGCGAARKRRENVEDDDSGTGVCNGMSDADGKRLKSTGSEDENQDQKGGNETNSGKGPEQKSKPVSDPSKDYIHVRARRGQATDSHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRTSPGIEGFPSKDFGQQAFDTSGMGYGSQTARDQYGRDTSPEWLHMQIGGGFDRQT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10596.1 vs. NCBI nr
Match: gi|902217511|gb|KNA17747.1| (hypothetical protein SOVF_076120 [Spinacia oleracea]) HSP 1 Score: 520.0 bits (1338), Expect = 2.400e-144 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Spo10596.1 vs. NCBI nr
Match: gi|731344254|ref|XP_010683313.1| (PREDICTED: transcription factor bHLH79 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 420.2 bits (1079), Expect = 2.600e-114 Identity = 223/269 (82.90%), Postives = 235/269 (87.36%), Query Frame = 1
BLAST of Spo10596.1 vs. NCBI nr
Match: gi|731344256|ref|XP_010683314.1| (PREDICTED: transcription factor BPE isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 342.0 bits (876), Expect = 9.000e-91 Identity = 188/235 (80.00%), Postives = 199/235 (84.68%), Query Frame = 1
BLAST of Spo10596.1 vs. NCBI nr
Match: gi|255558300|ref|XP_002520177.1| (PREDICTED: transcription factor bHLH79 isoform X1 [Ricinus communis]) HSP 1 Score: 297.4 bits (760), Expect = 2.500e-77 Identity = 174/275 (63.27%), Postives = 202/275 (73.45%), Query Frame = 1
BLAST of Spo10596.1 vs. NCBI nr
Match: gi|645229978|ref|XP_008221713.1| (PREDICTED: transcription factor bHLH79 [Prunus mume]) HSP 1 Score: 295.0 bits (754), Expect = 1.300e-76 Identity = 177/290 (61.03%), Postives = 202/290 (69.66%), Query Frame = 1
BLAST of Spo10596.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFZ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076120 PE=4 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 1.700e-144 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Spo10596.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EVG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155050 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 1.800e-114 Identity = 223/269 (82.90%), Postives = 235/269 (87.36%), Query Frame = 1
BLAST of Spo10596.1 vs. UniProtKB/TrEMBL
Match: B9S2F8_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0699220 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.800e-77 Identity = 174/275 (63.27%), Postives = 202/275 (73.45%), Query Frame = 1
BLAST of Spo10596.1 vs. UniProtKB/TrEMBL
Match: M5XSK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009543mg PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 8.800e-77 Identity = 180/291 (61.86%), Postives = 203/291 (69.76%), Query Frame = 1
BLAST of Spo10596.1 vs. UniProtKB/TrEMBL
Match: F6HPI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01140 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 7.400e-76 Identity = 169/278 (60.79%), Postives = 197/278 (70.86%), Query Frame = 1
BLAST of Spo10596.1 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 8.200e-52 Identity = 139/270 (51.48%), Postives = 166/270 (61.48%), Query Frame = 1
BLAST of Spo10596.1 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.100e-48 Identity = 131/231 (56.71%), Postives = 152/231 (65.80%), Query Frame = 1
BLAST of Spo10596.1 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 4.100e-35 Identity = 86/147 (58.50%), Postives = 104/147 (70.75%), Query Frame = 1
BLAST of Spo10596.1 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.000e-33 Identity = 82/126 (65.08%), Postives = 95/126 (75.40%), Query Frame = 1
BLAST of Spo10596.1 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 2.900e-33 Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 1
BLAST of Spo10596.1 vs. TAIR (Arabidopsis)
Match: AT5G62610.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 205.3 bits (521), Expect = 4.600e-53 Identity = 139/270 (51.48%), Postives = 166/270 (61.48%), Query Frame = 1
BLAST of Spo10596.1 vs. TAIR (Arabidopsis)
Match: AT1G59640.2 (BIG PETAL P) HSP 1 Score: 194.9 bits (494), Expect = 6.200e-50 Identity = 131/231 (56.71%), Postives = 152/231 (65.80%), Query Frame = 1
BLAST of Spo10596.1 vs. TAIR (Arabidopsis)
Match: AT5G48560.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 149.8 bits (377), Expect = 2.300e-36 Identity = 86/147 (58.50%), Postives = 104/147 (70.75%), Query Frame = 1
BLAST of Spo10596.1 vs. TAIR (Arabidopsis)
Match: AT3G07340.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 145.2 bits (365), Expect = 5.700e-35 Identity = 82/126 (65.08%), Postives = 95/126 (75.40%), Query Frame = 1
BLAST of Spo10596.1 vs. TAIR (Arabidopsis)
Match: AT1G68920.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 143.7 bits (361), Expect = 1.700e-34 Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10596.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10596.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10596.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10596.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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