Spo10598 (gene)

Overview
NameSpo10598
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S13
Locationchr1 : 39851226 .. 39853968 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGCCGTTGTATCTTTTAATGGATAGGGAGATTCCGGATTCGAAAGCCCATTGGTTTGTTAGTCATATTATTAGGGATGGGTCTTGGTATCTGAATGATATTGATCATTTAATTTCGAAGGATATTCAAAATGCGATTTTAGCAGTTCCTCTGGCTAGAAATCAGAATCAAGAAGACTTTTTAAGATGGCGATTTTCAACTAATGGGTTATTTAATATTAAATCTGCTTATTTCTCTCAATGTGCTCCTTTCTGGAACAGTAATGTCTCTAATTTCACTGGCTGGAAACAGTTATGGAAGCTAAAGTGTCCTTTTAAATATAAGATGTTATTGTGGAATTGTGTCCATGAAATTCTTCCTGTAGCTGAAAAAATTTCTGCCTTTATTCCAAATTTGTCTTCAGTTTGTGTCAGATGTGGTTTGCAATGTGAAAGTCATTTATATTTATTTAGGGATTGTTGTGAATCAGGAATTGTTTGGAATTTTATATTCCAAAGAGTAAAATGCTCAAAGAACATTAACTTGCACAGCTTCTTTAATCTTACCTGGCATGATTGGATTGTGTTTAATCTGTCACAATCTTAGGAGTGGAAAGTCTTATTCTGTGTTACTATTTGGCATGTGTGGAGATCTAGGAATCAGGCTGCCTTTGATTTAAAGATGAAAAATGTTTTCTCAATTTACAACTCTTTATTTGCGGATTATGCTGCCACTAATCATATCTTGCAGGGTAAAGGAAAGGGTAAATTGCCAAGGGCTGAGAAACTGATGAGGGCTTGGAAAGCACCATCTGATGATTTCATGAAACTCAATACTGATGGGGCTTGGAAGGCTATTAACTCAGCTGCAGGGGGTGGTATTTTTAGAAGATCAAGTGGCACATGGTCTCTGGGTTACTCAGGAAAATATCATGCAATAACTCCTTTAGCTGCTTAGCTTTTGGCACTTAGAGATGGGTTAATTCTTGCAGAAGAGTATGGCATCAGCAAGCTAGAAGTGGAAATTGATGCTCTTTCTTTGAAAGTGATGCTAGACTCAATGGATCAAACCTATCATCATGAATTGTCTCCATTGTTGAATGATGTGGTTAGTTTGATGACTAAGTTTGAGTCCATTAATCTAATGCATATCCCCAGAACTTATAACACAGTGGCACACAAGTTGACAGCTTTTGGGTTAGCTATGGATGAGAGGCAGAAGATCCATTTGGTGGTTCCAGATTGGGCTCAAGAGGCATATGAAGCGGATTTGAGAATTTTCTCTCCTGTGGTGGGTGTTGAGGATCCTTTTCCTCCTTTGGCACGGTCAAGTGGTGATATTCATAATCAGATTCCAGAAGAGATGGATACCAGTGAGGATGTTATAATGTTTGGTACAATCGCTGCTCCTATGAGGAGGGCAGATGATGCAGCATTAGCAGCAATTGGAAAGGGTAAAGCAAATTTGGGACATGAAGGAAATAACAGCAAGAGCAACGTTCAGAAGGTTGGTGGCATCAACATTGTAAATGTTAGAGAGTAGTTGGCTCAGGAATTCTCTTCACCTAGTCAGTTGGATTACAAATTCTTATAGTTCTATCTTATTTCTGGGTGAAGTTTTTGTAAATCTTTTGGATAAGTATTGGTGGTGTGTTGGTCTAATTAGCTTTCTTTGCTGGGCTTTCAGCTTTTGTAGGATGGGTTGTTGTACAAAACAGTTTATGAAGCCCATGGGCTAATTTAATATATATCTCCTCTTTTAAGTTAAAAAAAAAAAAGCTTCCTTTCTAGTAGATGTGAATGTCTCCTGTTGTGCAAAGACCTAGGCCTTTATTAGTTATTAATTGGTAGCTCTAATTTTCTTACTAGTTAATCAAAAAACGAAAAAAAAAAAAACCATGGGCCTCCCCTCATGGACCAAATCCAACCTTTGAAAGGCAAACCCAAAAACCCACGAAGGCTGGAAATATTTCGGGTATATTAATCCAACTACGTGAATGAACCACTGAAATGCTGGGAAAAATCTAATCTAGGGTTTATTTTTCAGTGTGCGTCGTCAGCAGCAGCAGCAAGGAGAGTAAGAAGCCGCCGCCGTAGCGCCACCCAAACTAGGATCGATTACTCCTTACCTACGCCGGCACCATGGGTCGTATGCACAGTCGCGGGTACTTCTTCTTTTACACTCTCTTTTTCTGACATTTCATCTCTTCTCATTCTTCAATGGCGGCGATTCCTTTTCTTATTTTCTGACCTTTACAGTAAGGGAATGTCCGCCTCTTCTATCCCCTACAAGAGGACCCCACCTTCCTGGCTCAAGATCTCCGCTCAAGATGTAAGTTTTTAGATTTACCTTATTTAGGTAATTATTCTTGTTGGGTATATTATCCTCTATGATTTGGTTTTGAATTCTATTTTTTTCTACCTCGATTAATCGTTCAAATTTATTTGATTAGTCTTTTTTTGGGGGGGTTTGTTTGGGTATTTTTTATCATATTTTTTGTATTTAAATTTGTGTGTTTCTGTTGAAGGTGGATGAGAACATTTGTAAGTTTGCAAAGAAGGGTTTGACACCTTCTCAGATTGGTGTGATTTTGAGGGATTCTCATGGTATTGCTCAAGTCAAGAGTGTTACTGGTAACAAGATCCTTCGTATCCTCAAAGCTCATGGTAAGTTATTTTCTGATATCTTTTGAAGATTTGATTGGGACTTGCTTTTTTGTAATTGAATGCAGTAATTGTGGTATATGTTGAATAGGAAG

mRNA sequence

ATGGATAGGCCGTTGTATCTTTTAATGGATAGGGAGATTCCGGATTCGAAAGCCCATTGGTTTGTTAGTCATATTATTAGGGATGGGTCTTGATCTAGGAATCAGGCTGCCTTTGATTTAAAGATGAAAAATGTTTTCTCAATTTACAACTCTTTATTTGCGGATTATGCTGCCACTAATCATATCTTGCAGGGTAAAGGAAAGGGTAAATTGCCAAGGGCTGAGAAACTGATGAGGGCTTGGAAAGCACCATCTGATGATTTCATGAAACTCAATACTGATGGGGCTTGGAAGGCTATTAACTCAGCTGCAGGGGGTGAAGAGTATGGCATCAGCAAGCTAGAAGTGGAAATTGATGCTCTTTCTTTGAAAGTGATGCTAGACTCAATGGATCAAACCTATCATCATGAATTGTCTCCATTGTTGAATGATGTGGTTAGTTTGATGACTAAGTTTGAGTCCATTAATCTAATGCATATCCCCAGAACTTATAACACAGTGGCACACAAGTTGACAGCTTTTGGGTTAGCTATGGATGAGAGGCAGAAGATCCATTTGGTGGTTCCAGATTGGGCTCAAGAGGCATATGAAGCGGATTTGAGAATTTTCTCTCCTGTGGTGGGTGTTGAGGATCCTTTTCCTCCTTTGGCACGGTCAAGTGGTGATATTCATAATCAGATTCCAGAAGAGATGGATACCAGTGAGGATGTTATAATGTTTGGTACAATCGCTGCTCCTATGAGGAGGGCAGATGATGCAGCATTAGCAGCAATTGGAAAGGGTAAAGCAAATTTGGGACATGAAGGAAATAACAGCAAGAGCAACGTTCAGAAGTGTGCGTCGTCAGCAGCAGCAGCAAGGAGAGTAAGAAGCCGCCGCCGTAGCGCCACCCAAACTAGGATCGATTACTCCTTACCTACGCCGGCACCATGGGTCGTATGCACAGTCGCGGGTACTTCTTCTTTTACACTCTCTTTTTCTGACATTTCATCTCTTCTCATTCTTCAATGGCGGCGATTCCTTTTCTTATTTTCTGACCTTTACAGTAAGGGAATGTCCGCCTCTTCTATCCCCTACAAGAGGACCCCACCTTCCTGGCTCAAGATCTCCGCTCAAGATGTGGATGAGAACATTTGTAAGTTTGCAAAGAAGGGTTTGACACCTTCTCAGATTGGTGTGATTTTGAGGGATTCTCATGGTATTGCTCAAGTCAAGAGTGTTACTGGTAACAAGATCCTTCGTATCCTCAAAGCTCATGGTAAGTTATTTTCTGATATCTTTTGAAGATTTGATTGGGACTTGCTTTTTTGTAATTGAATGCAGTAATTGTGGTATATGTTGAATAGGAAG

Coding sequence (CDS)

ATGAAAAATGTTTTCTCAATTTACAACTCTTTATTTGCGGATTATGCTGCCACTAATCATATCTTGCAGGGTAAAGGAAAGGGTAAATTGCCAAGGGCTGAGAAACTGATGAGGGCTTGGAAAGCACCATCTGATGATTTCATGAAACTCAATACTGATGGGGCTTGGAAGGCTATTAACTCAGCTGCAGGGGGTGAAGAGTATGGCATCAGCAAGCTAGAAGTGGAAATTGATGCTCTTTCTTTGAAAGTGATGCTAGACTCAATGGATCAAACCTATCATCATGAATTGTCTCCATTGTTGAATGATGTGGTTAGTTTGATGACTAAGTTTGAGTCCATTAATCTAATGCATATCCCCAGAACTTATAACACAGTGGCACACAAGTTGACAGCTTTTGGGTTAGCTATGGATGAGAGGCAGAAGATCCATTTGGTGGTTCCAGATTGGGCTCAAGAGGCATATGAAGCGGATTTGAGAATTTTCTCTCCTGTGGTGGGTGTTGAGGATCCTTTTCCTCCTTTGGCACGGTCAAGTGGTGATATTCATAATCAGATTCCAGAAGAGATGGATACCAGTGAGGATGTTATAATGTTTGGTACAATCGCTGCTCCTATGAGGAGGGCAGATGATGCAGCATTAGCAGCAATTGGAAAGGGTAAAGCAAATTTGGGACATGAAGGAAATAACAGCAAGAGCAACGTTCAGAAGTGTGCGTCGTCAGCAGCAGCAGCAAGGAGAGTAAGAAGCCGCCGCCGTAGCGCCACCCAAACTAGGATCGATTACTCCTTACCTACGCCGGCACCATGGGTCGTATGCACAGTCGCGGGTACTTCTTCTTTTACACTCTCTTTTTCTGACATTTCATCTCTTCTCATTCTTCAATGGCGGCGATTCCTTTTCTTATTTTCTGACCTTTACAGTAAGGGAATGTCCGCCTCTTCTATCCCCTACAAGAGGACCCCACCTTCCTGGCTCAAGATCTCCGCTCAAGATGTGGATGAGAACATTTGTAAGTTTGCAAAGAAGGGTTTGACACCTTCTCAGATTGGTGTGATTTTGAGGGATTCTCATGGTATTGCTCAAGTCAAGAGTGTTACTGGTAACAAGATCCTTCGTATCCTCAAAGCTCATGGTAAGTTATTTTCTGATATCTTTTGA

Protein sequence

MKNVFSIYNSLFADYAATNHILQGKGKGKLPRAEKLMRAWKAPSDDFMKLNTDGAWKAINSAAGGEEYGISKLEVEIDALSLKVMLDSMDQTYHHELSPLLNDVVSLMTKFESINLMHIPRTYNTVAHKLTAFGLAMDERQKIHLVVPDWAQEAYEADLRIFSPVVGVEDPFPPLARSSGDIHNQIPEEMDTSEDVIMFGTIAAPMRRADDAALAAIGKGKANLGHEGNNSKSNVQKCASSAAAARRVRSRRRSATQTRIDYSLPTPAPWVVCTVAGTSSFTLSFSDISSLLILQWRRFLFLFSDLYSKGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGKLFSDIF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10598.1Spo10598.1mRNA


Homology
[Close]
BLAST of Spo10598.1 vs. NCBI nr
Match: gi|902210705|gb|KNA16510.1| (hypothetical protein SOVF_088520 [Spinacia oleracea])

HSP 1 Score: 160.6 bits (405), Expect = 5.400e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHGKLFSDIF 387
           NKILRILKAHGKLFSDIF
Sbjct: 69  NKILRILKAHGKLFSDIF 86
[Close]
BLAST of Spo10598.1 vs. NCBI nr
Match: gi|902210704|gb|KNA16509.1| (hypothetical protein SOVF_088510 [Spinacia oleracea])

HSP 1 Score: 160.6 bits (405), Expect = 5.400e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHGKLFSDIF 387
           NKILRILKAHGKLFSDIF
Sbjct: 69  NKILRILKAHGKLFSDIF 86
[Close]
BLAST of Spo10598.1 vs. NCBI nr
Match: gi|763742408|gb|KJB09907.1| (hypothetical protein B456_001G174200, partial [Gossypium raimondii])

HSP 1 Score: 144.4 bits (363), Expect = 4.000e-31
Identity = 75/116 (64.66%), Postives = 81/116 (69.83%), Query Frame = 1 

		  

Query: 264 LPTPAPWVVCTVAGTSSFTLSFSDISSLLILQWRRFLFLFSDLYSKGMSASSIPYKRTPP 323
           L TP PWVVCT  G                               KG+SAS++PYKRTPP
Sbjct: 14  LGTPQPWVVCTAEGC------------------------------KGISASALPYKRTPP 73

Query: 324 SWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHG 380
           SWLKIS+QDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHG
Sbjct: 74  SWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG 99
[Close]
BLAST of Spo10598.1 vs. NCBI nr
Match: gi|593265380|ref|XP_007134868.1| (hypothetical protein PHAVU_010G082900g [Phaseolus vulgaris])

HSP 1 Score: 142.5 bits (358), Expect = 1.500e-30
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+S+S++PYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHG 380
           NKILRILKAHG
Sbjct: 69  NKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. NCBI nr
Match: gi|1021030230|gb|KZM88015.1| (hypothetical protein DCAR_031522 [Daucus carota subsp. sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.600e-30
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1 

		  

Query: 307 YSKGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 366
           + KGMSAS++PYKRTPPSWLKIS+Q+VD+NICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   HGKGMSASALPYKRTPPSWLKISSQEVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 367 TGNKILRILKAHG 380
           TGNKILRILKAHG
Sbjct: 67  TGNKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBW3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088510 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.800e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHGKLFSDIF 387
           NKILRILKAHGKLFSDIF
Sbjct: 69  NKILRILKAHGKLFSDIF 86
[Close]
BLAST of Spo10598.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAJ7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088520 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.800e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHGKLFSDIF 387
           NKILRILKAHGKLFSDIF
Sbjct: 69  NKILRILKAHGKLFSDIF 86
[Close]
BLAST of Spo10598.1 vs. UniProtKB/TrEMBL
Match: A0A0D2LZT7_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_001G174200 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.800e-31
Identity = 75/116 (64.66%), Postives = 81/116 (69.83%), Query Frame = 1 

		  

Query: 264 LPTPAPWVVCTVAGTSSFTLSFSDISSLLILQWRRFLFLFSDLYSKGMSASSIPYKRTPP 323
           L TP PWVVCT  G                               KG+SAS++PYKRTPP
Sbjct: 14  LGTPQPWVVCTAEGC------------------------------KGISASALPYKRTPP 73

Query: 324 SWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHG 380
           SWLKIS+QDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHG
Sbjct: 74  SWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG 99
[Close]
BLAST of Spo10598.1 vs. UniProtKB/TrEMBL
Match: V7AML9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G082900g PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.100e-30
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+S+S++PYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHG 380
           NKILRILKAHG
Sbjct: 69  NKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. UniProtKB/TrEMBL
Match: A0A164TV77_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_031522 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.800e-30
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1 

		  

Query: 307 YSKGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 366
           + KGMSAS++PYKRTPPSWLKIS+Q+VD+NICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   HGKGMSASALPYKRTPPSWLKISSQEVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 367 TGNKILRILKAHG 380
           TGNKILRILKAHG
Sbjct: 67  TGNKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.000e-31
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+S+S++PYKRTPPSWLKIS+QDV+ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.600e-30
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+S+S++PY+RT PSWLKIS+QDVDE ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.100e-28
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+SAS++PYKR+ PSWLK ++QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.900e-28
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+SAS++PYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.100e-24
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+S+S++PYKRTPPSWLK +A DV+E I K AKKG  PSQIGV+LRD HGI  VKSVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. TAIR (Arabidopsis)
Match: AT4G00100.1 (ribosomal protein S13A)

HSP 1 Score: 129.0 bits (323), Expect = 6.200e-30
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+SAS++PYKR+ PSWLK ++QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
[Close]
BLAST of Spo10598.1 vs. TAIR (Arabidopsis)
Match: AT3G60770.1 (Ribosomal protein S13/S15)

HSP 1 Score: 128.3 bits (321), Expect = 1.100e-29
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 309 KGMSASSIPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 368
           KG+SAS++PYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 369 NKILRILKAHG 380
           +KILRILKAHG
Sbjct: 69  SKILRILKAHG 79
The following BLAST results are available for this feature:
BLAST of Spo10598.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902210705|gb|KNA16510.1|5.4e-36100.hypothetical protein SOVF_0885... [more]
gi|902210704|gb|KNA16509.1|5.4e-36100.hypothetical protein SOVF_0885... [more]
gi|763742408|gb|KJB09907.1|4.0e-3164.6hypothetical protein B456_001G... [more]
gi|593265380|ref|XP_007134868.1|1.5e-3094.3hypothetical protein PHAVU_010... [more]
gi|1021030230|gb|KZM88015.1|2.6e-3090.4hypothetical protein DCAR_0315... [more]
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BLAST of Spo10598.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RBW3_SPIOL3.8e-36100.Uncharacterized protein OS=Spi... [more]
A0A0K9RAJ7_SPIOL3.8e-36100.Uncharacterized protein OS=Spi... [more]
A0A0D2LZT7_GOSRA2.8e-3164.6Uncharacterized protein (Fragm... [more]
V7AML9_PHAVU1.1e-3094.3Uncharacterized protein OS=Pha... [more]
A0A164TV77_DAUCA1.8e-3090.4Uncharacterized protein OS=Dau... [more]
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BLAST of Spo10598.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS13_SOYBN9.0e-3188.740S ribosomal protein S13 OS=G... [more]
RS13_PEA7.6e-3087.340S ribosomal protein S13 OS=P... [more]
RS132_ARATH1.1e-2884.540S ribosomal protein S13-2 OS... [more]
RS131_ARATH1.9e-2884.540S ribosomal protein S13-1 OS... [more]
RS132_ORYSJ8.1e-2474.640S ribosomal protein S13-2 OS... [more]
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BLAST of Spo10598.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G00100.16.2e-3084.5ribosomal protein S13A[more]
AT3G60770.11.1e-2984.5Ribosomal protein S13/S15[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 308..360
score: 3.3
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 308..360
score: 2.7
NoneNo IPR availablePANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 309..379
score: 7.1
NoneNo IPR availablePFAMPF13456RVT_3coord: 67..132
score: 1.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009987 cellular process
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006334 nucleosome assembly
biological_process GO:0008283 cell proliferation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006306 DNA methylation
biological_process GO:0006270 DNA replication initiation
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0016458 gene silencing
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0006457 protein folding
biological_process GO:0009909 regulation of flower development
biological_process GO:0006364 rRNA processing
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0044205 'de novo' UMP biosynthetic process
biological_process GO:0006414 translational elongation
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0001510 RNA methylation
biological_process GO:0006396 RNA processing
cellular_component GO:0044425 membrane part
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0042555 MCM complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005657 replication fork
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0000786 nucleosome
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0009506 plasmodesma
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0004590 orotidine-5'-phosphate decarboxylase activity
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004588 orotate phosphoribosyltransferase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003678 DNA helicase activity
RNA-Seq Expression