Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGAGCCTGAGCCCGAGCCCGAGCCCGAGGGTGAAACAAAGAGTTCCTCTAGTTCTGTACAGTCTACATTAGTAACATTACCATTTGATGTTTATTTTCATAAGAAATGAAGGAGAATTAACAGATAAGGCGCAAAACCAAGAAAAATGGCTTGGAGCCTAGCACTTCCTGCTTTATCAATTGCTGCATTTGATAATTCATCAAACTTCATATCTTCTGCTACATTTTGTTCTTCAAATTCTCCCTTTTCCTCTTTTTCTGCTAGTTTCTCTACCTTCAACTCAAAGCAACAATGGATTCTTCCCTTACAGAAAAGACCTCACCCCACAAAACAACTCATTTGCAAGGCAGCTGAGTACAAATTTCCTGACCCAATTCCTGAATTTGCTGAATCTGTAAGTTCTGAACTCGTCTCAGACGATCTGACCAAGTGTTTTTAATAAGATATTGCCTGTTTTCTGTGGAATTCTCATGTGGTATTCTTTTCTGTAATTTGATTTGGGATAAGCAGGAAACAGAAAAATTCAAGACCCATCTTCAGAAAAAGTTATCAAAGAAAGATATTTTTGGAGACAAATTGGACGAGGTTGTGGGTATCTGCACTGAGGTAATTAGGCTGATTAACCCATTGTTAATTTTGATTCAAAGGGTGAATTTTGTGCTATTTGGTTATGCATGTGCATTAATTGGAATTTAATCTGGCGATTATTCTTGTTAAGTTGTAAATTGAGATTATTTGAAAAAGATTTGAGAAATTGCCAAATTGGGATGTTTGATTAAAATGGCAATTGAAAGCATTGTTGTTGAATTTGGATGAAAAAAGTAATATGGTGATTTCACTATTTATTGTTGGAAGGCATGCTGTGTCAAAACATTTTCCTAATCCAAATTTCGAGGCGAGTTGAAGCTTCTAGGGTTCTAATCCGGCTCAGTTATGTCATTACTCACTATCATCCTTGTAGAAGATGTAGTCAAAACTATAGTTATTGTAATCCCTAATATTACTCCTTGTCAATGTAAATCCCTAATTGTTAGTCAAAGAATATCTCTAATTCCTAGGATTAATCTACGGTTAGTTGTTACTATTATTTTTTTGGTTCACTACGAGGAGTTCCCACCGCCTTCGGCGAGTGGACTAATCTCCCGTGGGAGTTGTTACTATTATAGCTATATAATGTAATTCATACAATGTAATATATTCAAGCTTTCCAATTCTCTACACCATTACCATAAGCTTTTAGGATAGTGCTGCAGAGTGCAAATATATGAAAGGACTCTCAGGCTTATAAAACAGTTATATGAATCTATACATAAGACTTTAGTAACTTGTACTTCTACCGCGTACTAGTGTAAGTTACGGTCTATACTCCATGGAAGATGATGAACATTGTTCATCAATAGTGCAATAACGATTAGACTCGGTTTGCTATGGATATGTCATTCTGAAGTATGAGTTTCATTCTTTTGTTGAACTTATTACCAGTAAGTGGACTGTTATATTATTGTCAACAGATCTTGGATAACTTCTTGCACACAGAATATGGGGGACCAGGGACTTTGCTGGTACTTCCTTTCATTGATATGGCTGATACTTTGAATGAACGTGGACTACCGGGAGGACCTCAAGCAGCTCGAGCAGCTGTCAAATGGGCTCAAGATAACGTAGACAAAGACTGGACCAAATGGACAACCGGAAACACCAAGTAGCAACACCTCGCCAAAGTTTCAGTTTAAGTATTTTGAGATAGTTTTAGGCCAGGAATTTTGAAGATAGTTTTATTATTTTATTTATCTAGTTTGTTTGATTTATGTTCTTGTGAAATGTAGAACCACCAGGCATAATTAGAACGTAAAGCATCAGGCTTTTAGAAACACAATTAAGTAAATCGTACGGAGTATGATTTATTTATTAATGAAATTTTGCAATATCCAGATCATTAGCTATGTCGTTTCTCTTCCT CGAGCCTGAGCCCGAGCCCGAGCCCGAGGGTGAAACAAAGAGTTCCTCTAGTTCTGTACAGTCTACATTAGTAACATTACCATTTGATGTTTATTTTCATAAGAAATGAAGGAGAATTAACAGATAAGGCGCAAAACCAAGAAAAATGGCTTGGAGCCTAGCACTTCCTGCTTTATCAATTGCTGCATTTGATAATTCATCAAACTTCATATCTTCTGCTACATTTTGTTCTTCAAATTCTCCCTTTTCCTCTTTTTCTGCTAGTTTCTCTACCTTCAACTCAAAGCAACAATGGATTCTTCCCTTACAGAAAAGACCTCACCCCACAAAACAACTCATTTGCAAGGCAGCTGAGTACAAATTTCCTGACCCAATTCCTGAATTTGCTGAATCTGAAACAGAAAAATTCAAGACCCATCTTCAGAAAAAGTTATCAAAGAAAGATATTTTTGGAGACAAATTGGACGAGGTTGTGGGTATCTGCACTGAGATCTTGGATAACTTCTTGCACACAGAATATGGGGGACCAGGGACTTTGCTGGTACTTCCTTTCATTGATATGGCTGATACTTTGAATGAACGTGGACTACCGGGAGGACCTCAAGCAGCTCGAGCAGCTGTCAAATGGGCTCAAGATAACGTAGACAAAGACTGGACCAAATGGACAACCGGAAACACCAAGTAGCAACACCTCGCCAAAGTTTCAGTTTAAGTATTTTGAGATAGTTTTAGGCCAGGAATTTTGAAGATAGTTTTATTATTTTATTTATCTAGTTTGTTTGATTTATGTTCTTGTGAAATGTAGAACCACCAGGCATAATTAGAACGTAAAGCATCAGGCTTTTAGAAACACAATTAAGTAAATCGTACGGAGTATGATTTATTTATTAATGAAATTTTGCAATATCCAGATCATTAGCTATGTCGTTTCTCTTCCT ATGGCTTGGAGCCTAGCACTTCCTGCTTTATCAATTGCTGCATTTGATAATTCATCAAACTTCATATCTTCTGCTACATTTTGTTCTTCAAATTCTCCCTTTTCCTCTTTTTCTGCTAGTTTCTCTACCTTCAACTCAAAGCAACAATGGATTCTTCCCTTACAGAAAAGACCTCACCCCACAAAACAACTCATTTGCAAGGCAGCTGAGTACAAATTTCCTGACCCAATTCCTGAATTTGCTGAATCTGAAACAGAAAAATTCAAGACCCATCTTCAGAAAAAGTTATCAAAGAAAGATATTTTTGGAGACAAATTGGACGAGGTTGTGGGTATCTGCACTGAGATCTTGGATAACTTCTTGCACACAGAATATGGGGGACCAGGGACTTTGCTGGTACTTCCTTTCATTGATATGGCTGATACTTTGAATGAACGTGGACTACCGGGAGGACCTCAAGCAGCTCGAGCAGCTGTCAAATGGGCTCAAGATAACGTAGACAAAGACTGGACCAAATGGACAACCGGAAACACCAAGTAG MAWSLALPALSIAAFDNSSNFISSATFCSSNSPFSSFSASFSTFNSKQQWILPLQKRPHPTKQLICKAAEYKFPDPIPEFAESETEKFKTHLQKKLSKKDIFGDKLDEVVGICTEILDNFLHTEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQDNVDKDWTKWTTGNTK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10623.1 vs. NCBI nr
Match: gi|902175128|gb|KNA08535.1| (hypothetical protein SOVF_161440 [Spinacia oleracea]) HSP 1 Score: 363.6 bits (932), Expect = 2.000e-97 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Spo10623.1 vs. NCBI nr
Match: gi|731325977|ref|XP_010673789.1| (PREDICTED: uncharacterized protein LOC104890116 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 245.7 bits (626), Expect = 6.000e-62 Identity = 130/182 (71.43%), Postives = 144/182 (79.12%), Query Frame = 1
BLAST of Spo10623.1 vs. NCBI nr
Match: gi|720051263|ref|XP_010272033.1| (PREDICTED: uncharacterized protein LOC104607939 [Nelumbo nucifera]) HSP 1 Score: 208.0 bits (528), Expect = 1.400e-50 Identity = 114/196 (58.16%), Postives = 135/196 (68.88%), Query Frame = 1
BLAST of Spo10623.1 vs. NCBI nr
Match: gi|661873500|emb|CDP20914.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 206.8 bits (525), Expect = 3.100e-50 Identity = 93/117 (79.49%), Postives = 107/117 (91.45%), Query Frame = 1
BLAST of Spo10623.1 vs. NCBI nr
Match: gi|823159227|ref|XP_012479445.1| (PREDICTED: uncharacterized protein LOC105794697 [Gossypium raimondii]) HSP 1 Score: 205.7 bits (522), Expect = 6.800e-50 Identity = 108/173 (62.43%), Postives = 126/173 (72.83%), Query Frame = 1
BLAST of Spo10623.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMP1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_161440 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 1.400e-97 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Spo10623.1 vs. UniProtKB/TrEMBL
Match: A0A068VK01_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007863001 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 2.100e-50 Identity = 93/117 (79.49%), Postives = 107/117 (91.45%), Query Frame = 1
BLAST of Spo10623.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SJG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185900 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 4.800e-50 Identity = 108/173 (62.43%), Postives = 126/173 (72.83%), Query Frame = 1
BLAST of Spo10623.1 vs. UniProtKB/TrEMBL
Match: K4BWD8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.400e-49 Identity = 102/166 (61.45%), Postives = 128/166 (77.11%), Query Frame = 1
BLAST of Spo10623.1 vs. UniProtKB/TrEMBL
Match: A0A067GV61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030190mg PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 5.300e-49 Identity = 91/110 (82.73%), Postives = 102/110 (92.73%), Query Frame = 1
BLAST of Spo10623.1 vs. TAIR (Arabidopsis)
Match: AT1G10522.1 (unknown protein) HSP 1 Score: 194.5 bits (493), Expect = 5.600e-50 Identity = 84/110 (76.36%), Postives = 100/110 (90.91%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10623.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10623.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10623.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo10623.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|