Spo10786 (gene)

Overview
NameSpo10786
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTransmembrane protein, putative
Locationchr1 : 41620046 .. 41621401 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATTGTTGGAAAGCTACTCATTCCCCTCCACTTCTATGGTGGGTTCTACTTTCCTTATCAGAGTTTGACATTTTATAAATCCAACTGATGCCCTCCACTACTCATTACACATGCCTCACATTCAGAAGTCACAGAGGAAAAAAAATATCCCAAGTGCCTTTCATCACCACATCATAACAAGATATGCCCAAATGTATATAATTCTTAGACGGAAGGCGGAGACAGAAAGTGCGCGCCACACTTAACTTCAGAAAATTCCGGTTATCCTCCAAAAGAGCCCCATTATTTGACTTTTTTTCTGGCTTGGAGTAAAAAACGTCTAGGTGTGCATTATCATATCTTAAGCTTTCTAACAATAGCCTTCACTATATATATGTCAACGGTACAACTCTGTATAGTACTCCAGCTACCATAGTGTAATACCTCAAGTTCAGCAATAAAATATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGTAAAATACAGCAAAACTATCTTAAATAAAGTCTCACTATGGTTGTTCTTTTTATATCTTTTCCTTGACTAGTCTTTGTTTTTTTGTCGGTGTTACCATTTCAGGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGTATTTGTACATCTATATATGCAGCTCATGCACCATGTATGAAGGTCATTCCTTTTCCTGTAACTAATTTATGTTCTGTTTTCTAACAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGATGCTAAGTGTGTTGCTTATCTCCACAGCTTGTAATAAAACCATAAAACCATATTTGCCATCATAGCTCAGGCAAGTGTAGGCGTGTAGCATATGATGGCAAATTCTGATCCTAACCCTTAATTATGGGGAGATCAGTACCATTAGCTATTTAGCCAACAACTAATGTAAATATCGAGCAATACTTCTTTGATGTATCCTTAATGGTTTGTCTTCAAGGAAATTACATGGCTGGCCCTATCTAATTAGGTTGATCATAAATGGGTTGGTCAGTTGGTAGCTAGGCTAGTTTCTGTTACATAGATATGTCTTAAGACTCTTAACCTGTAATGATCTTCTACTTTCTAATAGTATGAAATTTATCTTATAGAAATCATTAGATCACACTGTTCCAACTAGATTGTTAATTTCTTTCACTTTAAGGTTGATCAGACAAGAAGTACTAAAGTGCGT

mRNA sequence

ATTATTGTTGGAAAGCTACTCATTCCCCTCCACTTCTATGGTGGGTTCTACTTTCCTTATCAGAGTTTGACATTTTATAAATCCAACTGATGCCCTCCACTACTCATTACACATGCCTCACATTCAGAAGTCACAGAGGAAAAAAAATATCCCAAGTGCCTTTCATCACCACATCATAACAAGATATGCCCAAATGTATATAATTCTTAGACGGAAGGCGGAGACAGAAAGTGCGCGCCACACTTAACTTCAGAAAATTCCGGTTATCCTCCAAAAGAGCCCCATTATTTGACTTTTTTTCTGGCTTGGAGTAAAAAACGTCTAGGTGTGCATTATCATATCTTAAGCTTTCTAACAATAGCCTTCACTATATATATGTCAACGGTACAACTCTGTATAGTACTCCAGCTACCATAGTGTAATACCTCAAGTTCAGCAATAAAATATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGATGCTAAGTGTGTTGCTTATCTCCACAGCTTGTAATAAAACCATAAAACCATATTTGCCATCATAGCTCAGGCAAGTGTAGGCGTGTAGCATATGATGGCAAATTCTGATCCTAACCCTTAATTATGGGGAGATCAGTACCATTAGCTATTTAGCCAACAACTAATGTAAATATCGAGCAATACTTCTTTGATGTATCCTTAATGGTTTGTCTTCAAGGAAATTACATGGCTGGCCCTATCTAATTAGGTTGATCATAAATGGGTTGGTCAGTTGGTAGCTAGGCTAGTTTCTGTTACATAGATATGTCTTAAGACTCTTAACCTGTAATGATCTTCTACTTTCTAATAGTATGAAATTTATCTTATAGAAATCATTAGATCACACTGTTCCAACTAGATTGTTAATTTCTTTCACTTTAAGGTTGATCAGACAAGAAGTACTAAAGTGCGT

Coding sequence (CDS)

ATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGA

Protein sequence

MASHMLHLFVIMLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKNDYGPTTSNPVHTPRPPRR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10786.1Spo10786.1mRNA


Homology
[Close]
BLAST of Spo10786.1 vs. NCBI nr
Match: gi|902169337|gb|KNA07651.1| (hypothetical protein SOVF_169960 [Spinacia oleracea])

HSP 1 Score: 151.4 bits (381), Expect = 7.500e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 12 MLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKND 71
          MLACSYLISSNAIPMSRLSNIQNKGREVL TRSINQDQMIPEDKMEEDSIEGRMDFEKND
Sbjct: 1  MLACSYLISSNAIPMSRLSNIQNKGREVLETRSINQDQMIPEDKMEEDSIEGRMDFEKND 60

Query: 72 YGPTTSNPVHTPRPPRR 89
          YGPTTSNPVHTPRPPRR
Sbjct: 61 YGPTTSNPVHTPRPPRR 77
[Close]
BLAST of Spo10786.1 vs. NCBI nr
Match: gi|870855312|gb|KMT07045.1| (hypothetical protein BVRB_6g153740 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 121.7 bits (304), Expect = 6.400e-25
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 1 

		  

Query: 1  MASHMLHLFVIMLACSYLI-SSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEED 60
          MASH++ +FV++LACSYLI SSNAIP SRLSN+   GR V+ T+S+++ QMI E KME++
Sbjct: 1  MASHVVPMFVLVLACSYLIISSNAIPASRLSNLPTIGRAVVVTKSMDEGQMISEAKMEDE 60

Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
           IEGRMDFEKNDYGPTTSNPVHTPRPPR
Sbjct: 61 FIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
[Close]
BLAST of Spo10786.1 vs. NCBI nr
Match: gi|719965919|ref|XP_010257658.1| (PREDICTED: uncharacterized protein LOC104597668 [Nelumbo nucifera])

HSP 1 Score: 58.9 bits (141), Expect = 5.100e-6
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1 

		  

Query: 1  MASHMLHLFVIMLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQD-QMIPEDKMEED 60
          MA   LHL VI+L+ S+LIS NA+P++R  N+ +  R +L   S N   Q   E+  EE+
Sbjct: 1  MAGSPLHLLVILLSFSHLISLNAVPITRTRNLLSDTRVLLPADSENTHLQASTEEVWEEE 60

Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPP 87
             GRM  E NDY  + +N  HTP+PP
Sbjct: 61 LANGRMGLELNDYPGSGANNRHTPKPP 87
[Close]
BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QM67_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_169960 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.200e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 12 MLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKND 71
          MLACSYLISSNAIPMSRLSNIQNKGREVL TRSINQDQMIPEDKMEEDSIEGRMDFEKND
Sbjct: 1  MLACSYLISSNAIPMSRLSNIQNKGREVLETRSINQDQMIPEDKMEEDSIEGRMDFEKND 60

Query: 72 YGPTTSNPVHTPRPPRR 89
          YGPTTSNPVHTPRPPRR
Sbjct: 61 YGPTTSNPVHTPRPPRR 77
[Close]
BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZX1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153740 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.400e-25
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 1 

		  

Query: 1  MASHMLHLFVIMLACSYLI-SSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEED 60
          MASH++ +FV++LACSYLI SSNAIP SRLSN+   GR V+ T+S+++ QMI E KME++
Sbjct: 1  MASHVVPMFVLVLACSYLIISSNAIPASRLSNLPTIGRAVVVTKSMDEGQMISEAKMEDE 60

Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
           IEGRMDFEKNDYGPTTSNPVHTPRPPR
Sbjct: 61 FIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
The following BLAST results are available for this feature:
BLAST of Spo10786.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902169337|gb|KNA07651.1|7.5e-3498.7hypothetical protein SOVF_1699... [more]
gi|870855312|gb|KMT07045.1|6.4e-2571.5hypothetical protein BVRB_6g15... [more]
gi|719965919|ref|XP_010257658.1|5.1e-643.6PREDICTED: uncharacterized pro... [more]
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BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QM67_SPIOL5.2e-3498.7Uncharacterized protein OS=Spi... [more]
A0A0J8BZX1_BETVU4.4e-2571.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo10786.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10786.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33474FAMILY NOT NAMEDcoord: 1..88
score: 2.8
NoneNo IPR availablePANTHERPTHR33474:SF6SUBFAMILY NOT NAMEDcoord: 1..88
score: 2.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression
   



Co-expression
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Spo039660.66Barchart | Table
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Spo269430.65Barchart | Table