Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTTTGACAATATGAAGCAAGTCATTTTCAACAGAACTTTCCCATGAATTTTCTCCCTTTTCCTTACAAACTAAGCCTAAAAACCATGATGAGAAGAAAAGACTGATTCCTTAACCCTTGCCCAGCTATCTGAAAAATGGAATTCTTCCAAAGAGCAAAGGTCTTCCGGCTGAAAAGCAGCAACCAAAGCAAGTACCTGATAGCAGATCAAGATGGAGATACAGTTAAACAAACCCGCGACAATTCCTCAACATACACACGTTGGTCCTTTGAGCCTGTTGAGGGAAAGAACAATGTGATCCGTATCAGAAGCTGCAACAGTTGGAAGTACTTAGCCGCGTCTGAAGAGCATTTCCTGCTTGGAATGACAGGAAAGAGAGTTGCACAAAGACCTTGGCTCGGTCCTACAGTCGAATGGGAGCCGATCAATGAAGGGCCTTACATCAAACTCAAAAGTCATACCGGAACTTTCTTAAGAGCCAACAGAGGCCTTCCCCCTTGGAGGAATACCATTACACATGATCTTCCTGGTCATTGGACAGCTTCTGAGAGTATGATTCTGTGGATCGTTGATATAGTTGAAATTGATCATAATTCAACTCCTAAATCATTGGACAAGGTTAAGGGTAATGTTGTTCCTCCACGCTTCAGTAATGTAAAGGATCAGACACCTTTGTCAAATTGCTCTTCTTTGTCAATTGAGGATGATGGCCCTGCTATGTATTCGTCTTCCTCCGTCGAGGTATGACCATAACTCTCATGTTTTTCTTTAAATGTTTCTTCTGCTCTTTCCAAAATTGTTTCATTTTCTGGATTTAAATCATCTAATCAACTCAAAACCATGTGATAAAATATTACACCATTAAAAGAATCAGAAAAATTACACCAATGTGTTTTTATTTTTTCTCATTCCGATTCAGAATACTCCTAACAAACATTTTTACCTTTTGTTGGGCTTGGACTCGGGCTATGTTATGTTCCTAAACCCAGAAGTCTGACTCCTTCAGCAACCTAAAAGCTATGTTAGATGGCCTAGAAGACAAAGTTTATGGTGTAAAAGAACGAGCAACATTAGATACAGAACGCGTTAACCAATCAGAAGTCAAGATGGCTAAGCAATCCCTCAAAGAACTAAAGGACATGGATTTTCATGGCATCTTATCTTTAGGACTATACAAGGAGCTAGAAAAGGCAGTAAATGTTGTTTCTGTTGATGCAAAAACATCGCGCCAAGAAACACTACAAAAGCAACTCAAGACCATGAAAACTGACCATGATTTGGCCACTCAGGATTTAGTTGAATATGCTACATTTGCTAGTAAAACAGTGGAGATGAAGGCCGAGGTTGATAAAGATGTGACCAAGGCTTGTGTGTTAGAGGCCACTCTTGAAAAATGGTTCAGTGATGAGTTTGTAAATGCAAGAGCTAACAAAGAGGAGTTGTTAATGGAACTAGAAGAAACTGATAGCAGCATCAAGGCTGTGGAAGTGCTCAGATCACGAATAGCCAAGAAAAATGAAAGACTAGAGGAGATGGAAGCAGAGGAGGAATCATGGCAAGCAAGGAAACTTGAAGCTGAAAGAAAATTACAGAGAGTTGAGAAAGAGTGGGTTGAGATTAAGACATTGTTACAGGATGTTTAATTAATTTAATGGCCTTCATTTTGTATCTAATTCTTTTCATGATTAAATTAAATACTATTTGAAATATTGTAAACATTAATATGTTACCTCTTCAATCATTTTTCTGAACATGTAACCTG AATTTTGACAATATGAAGCAAGTCATTTTCAACAGAACTTTCCCATGAATTTTCTCCCTTTTCCTTACAAACTAAGCCTAAAAACCATGATGAGAAGAAAAGACTGATTCCTTAACCCTTGCCCAGCTATCTGAAAAATGGAATTCTTCCAAAGAGCAAAGGTCTTCCGGCTGAAAAGCAGCAACCAAAGCAAGTACCTGATAGCAGATCAAGATGGAGATACAGTTAAACAAACCCGCGACAATTCCTCAACATACACACGTTGGTCCTTTGAGCCTGTTGAGGGAAAGAACAATGTGATCCGTATCAGAAGCTGCAACAGTTGGAAGTACTTAGCCGCGTCTGAAGAGCATTTCCTGCTTGGAATGACAGGAAAGAGAGTTGCACAAAGACCTTGGCTCGGTCCTACAGTCGAATGGGAGCCGATCAATGAAGGGCCTTACATCAAACTCAAAAGTCATACCGGAACTTTCTTAAGAGCCAACAGAGGCCTTCCCCCTTGGAGGAATACCATTACACATGATCTTCCTGGTCATTGGACAGCTTCTGAGAGTATGATTCTGTGGATCGTTGATATAGTTGAAATTGATCATAATTCAACTCCTAAATCATTGGACAAGGTTAAGGGTAATGTTGTTCCTCCACGCTTCAGTAATGTAAAGGATCAGACACCTTTGTCAAATTGCTCTTCTTTGTCAATTGAGGATGATGGCCCTGCTATGTATTCGTCTTCCTCCGTCGAGAAGTCTGACTCCTTCAGCAACCTAAAAGCTATGTTAGATGGCCTAGAAGACAAAGTTTATGGTGTAAAAGAACGAGCAACATTAGATACAGAACGCGTTAACCAATCAGAAGTCAAGATGGCTAAGCAATCCCTCAAAGAACTAAAGGACATGGATTTTCATGGCATCTTATCTTTAGGACTATACAAGGAGCTAGAAAAGGCAGTAAATGTTGTTTCTGTTGATGCAAAAACATCGCGCCAAGAAACACTACAAAAGCAACTCAAGACCATGAAAACTGACCATGATTTGGCCACTCAGGATTTAGTTGAATATGCTACATTTGCTAGTAAAACAGTGGAGATGAAGGCCGAGGTTGATAAAGATGTGACCAAGGCTTGTGTGTTAGAGGCCACTCTTGAAAAATGGTTCAGTGATGAGTTTGTAAATGCAAGAGCTAACAAAGAGGAGTTGTTAATGGAACTAGAAGAAACTGATAGCAGCATCAAGGCTGTGGAAGTGCTCAGATCACGAATAGCCAAGAAAAATGAAAGACTAGAGGAGATGGAAGCAGAGGAGGAATCATGGCAAGCAAGGAAACTTGAAGCTGAAAGAAAATTACAGAGAGTTGAGAAAGAGTGGGTTGAGATTAAGACATTGTTACAGGATGTTTAATTAATTTAATGGCCTTCATTTTGTATCTAATTCTTTTCATGATTAAATTAAATACTATTTGAAATATTGTAAACATTAATATGTTACCTCTTCAATCATTTTTCTGAACATGTAACCTG ATGGAATTCTTCCAAAGAGCAAAGGTCTTCCGGCTGAAAAGCAGCAACCAAAGCAAGTACCTGATAGCAGATCAAGATGGAGATACAGTTAAACAAACCCGCGACAATTCCTCAACATACACACGTTGGTCCTTTGAGCCTGTTGAGGGAAAGAACAATGTGATCCGTATCAGAAGCTGCAACAGTTGGAAGTACTTAGCCGCGTCTGAAGAGCATTTCCTGCTTGGAATGACAGGAAAGAGAGTTGCACAAAGACCTTGGCTCGGTCCTACAGTCGAATGGGAGCCGATCAATGAAGGGCCTTACATCAAACTCAAAAGTCATACCGGAACTTTCTTAAGAGCCAACAGAGGCCTTCCCCCTTGGAGGAATACCATTACACATGATCTTCCTGGTCATTGGACAGCTTCTGAGAGTATGATTCTGTGGATCGTTGATATAGTTGAAATTGATCATAATTCAACTCCTAAATCATTGGACAAGGTTAAGGGTAATGTTGTTCCTCCACGCTTCAGTAATGTAAAGGATCAGACACCTTTGTCAAATTGCTCTTCTTTGTCAATTGAGGATGATGGCCCTGCTATGTATTCGTCTTCCTCCGTCGAGAAGTCTGACTCCTTCAGCAACCTAAAAGCTATGTTAGATGGCCTAGAAGACAAAGTTTATGGTGTAAAAGAACGAGCAACATTAGATACAGAACGCGTTAACCAATCAGAAGTCAAGATGGCTAAGCAATCCCTCAAAGAACTAAAGGACATGGATTTTCATGGCATCTTATCTTTAGGACTATACAAGGAGCTAGAAAAGGCAGTAAATGTTGTTTCTGTTGATGCAAAAACATCGCGCCAAGAAACACTACAAAAGCAACTCAAGACCATGAAAACTGACCATGATTTGGCCACTCAGGATTTAGTTGAATATGCTACATTTGCTAGTAAAACAGTGGAGATGAAGGCCGAGGTTGATAAAGATGTGACCAAGGCTTGTGTGTTAGAGGCCACTCTTGAAAAATGGTTCAGTGATGAGTTTGTAAATGCAAGAGCTAACAAAGAGGAGTTGTTAATGGAACTAGAAGAAACTGATAGCAGCATCAAGGCTGTGGAAGTGCTCAGATCACGAATAGCCAAGAAAAATGAAAGACTAGAGGAGATGGAAGCAGAGGAGGAATCATGGCAAGCAAGGAAACTTGAAGCTGAAAGAAAATTACAGAGAGTTGAGAAAGAGTGGGTTGAGATTAAGACATTGTTACAGGATGTTTAA MEFFQRAKVFRLKSSNQSKYLIADQDGDTVKQTRDNSSTYTRWSFEPVEGKNNVIRIRSCNSWKYLAASEEHFLLGMTGKRVAQRPWLGPTVEWEPINEGPYIKLKSHTGTFLRANRGLPPWRNTITHDLPGHWTASESMILWIVDIVEIDHNSTPKSLDKVKGNVVPPRFSNVKDQTPLSNCSSLSIEDDGPAMYSSSSVEKSDSFSNLKAMLDGLEDKVYGVKERATLDTERVNQSEVKMAKQSLKELKDMDFHGILSLGLYKELEKAVNVVSVDAKTSRQETLQKQLKTMKTDHDLATQDLVEYATFASKTVEMKAEVDKDVTKACVLEATLEKWFSDEFVNARANKEELLMELEETDSSIKAVEVLRSRIAKKNERLEEMEAEEESWQARKLEAERKLQRVEKEWVEIKTLLQDV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10910.1 vs. NCBI nr
Match: gi|902210493|gb|KNA16451.1| (hypothetical protein SOVF_088600 [Spinacia oleracea]) HSP 1 Score: 815.5 bits (2105), Expect = 4.400e-233 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 1
BLAST of Spo10910.1 vs. NCBI nr
Match: gi|731319574|ref|XP_010670344.1| (PREDICTED: uncharacterized protein LOC104887419 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 516.2 bits (1328), Expect = 5.500e-143 Identity = 287/434 (66.13%), Postives = 339/434 (78.11%), Query Frame = 1
BLAST of Spo10910.1 vs. NCBI nr
Match: gi|870841683|gb|KMS95315.1| (hypothetical protein BVRB_009420 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 353.2 bits (905), Expect = 6.200e-94 Identity = 212/440 (48.18%), Postives = 290/440 (65.91%), Query Frame = 1
BLAST of Spo10910.1 vs. NCBI nr
Match: gi|731376361|ref|XP_010667541.1| (PREDICTED: uncharacterized protein LOC104884564 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 353.2 bits (905), Expect = 6.200e-94 Identity = 212/439 (48.29%), Postives = 290/439 (66.06%), Query Frame = 1
BLAST of Spo10910.1 vs. NCBI nr
Match: gi|731319564|ref|XP_010670338.1| (PREDICTED: myosin-4-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 345.1 bits (884), Expect = 1.700e-91 Identity = 214/464 (46.12%), Postives = 296/464 (63.79%), Query Frame = 1
BLAST of Spo10910.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAC1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088600 PE=4 SV=1) HSP 1 Score: 815.5 bits (2105), Expect = 3.100e-233 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 1
BLAST of Spo10910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZ12_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040590 PE=4 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 3.900e-143 Identity = 287/434 (66.13%), Postives = 339/434 (78.11%), Query Frame = 1
BLAST of Spo10910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DWS7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_009420 PE=4 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 4.300e-94 Identity = 212/440 (48.18%), Postives = 290/440 (65.91%), Query Frame = 1
BLAST of Spo10910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTS5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040570 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 1.200e-91 Identity = 214/464 (46.12%), Postives = 296/464 (63.79%), Query Frame = 1
BLAST of Spo10910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FMT2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040570 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 9.300e-89 Identity = 209/460 (45.43%), Postives = 292/460 (63.48%), Query Frame = 1
BLAST of Spo10910.1 vs. TAIR (Arabidopsis)
Match: AT1G27100.1 (Actin cross-linking protein) HSP 1 Score: 157.5 bits (397), Expect = 1.800e-38 Identity = 92/210 (43.81%), Postives = 128/210 (60.95%), Query Frame = 1
BLAST of Spo10910.1 vs. TAIR (Arabidopsis)
Match: AT1G59710.1 (Protein of unknown function (DUF569)) HSP 1 Score: 146.4 bits (368), Expect = 4.100e-35 Identity = 72/152 (47.37%), Postives = 103/152 (67.76%), Query Frame = 1
BLAST of Spo10910.1 vs. TAIR (Arabidopsis)
Match: AT3G28630.1 (Protein of unknown function (DUF569)) HSP 1 Score: 143.7 bits (361), Expect = 2.600e-34 Identity = 77/171 (45.03%), Postives = 107/171 (62.57%), Query Frame = 1
BLAST of Spo10910.1 vs. TAIR (Arabidopsis)
Match: AT1G69890.1 (Protein of unknown function (DUF569)) HSP 1 Score: 143.3 bits (360), Expect = 3.400e-34 Identity = 84/193 (43.52%), Postives = 111/193 (57.51%), Query Frame = 1
BLAST of Spo10910.1 vs. TAIR (Arabidopsis)
Match: AT3G01311.1 (Protein of unknown function (DUF569)) HSP 1 Score: 140.2 bits (352), Expect = 2.900e-33 Identity = 71/153 (46.41%), Postives = 106/153 (69.28%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10910.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10910.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10910.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo10910.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|