Spo10926 (gene)

Overview
NameSpo10926
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionProbable magnesium transporter NIPA9
LocationSpoScf_02578 : 539 .. 1555 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGCTTCGTATCTACAGACGACAACGAAGAGAACAAGAATTGGTATCTTTATTTGAATCTTGCTACCCTCCTATTTAACTTTAGAGTTTATCTTGTTGAAAGGAGCAGTTTTCTTGATTGTCATTTTTTAAAATTTTCTGCTGTAGATGCAATCTGAAGTTGTTGAGGAAATAATATACGGTCTGGAGTCTGGCATTCTGTTTGGGTATACCTAAGATCTCTCTCCAAAATTTATAAATGTTTCCAGAGCTTATTTTTTTCTCTTGCCTGTCTTTGTCCACTTACATGCTTCAGTTTTTTACCTAGTTTGCCCTTGTGCTTGTAAAAAAAAAATGTAAAGTCTGCGTATGCCTCAATCATGATCTACTATACATCCTTTTCTCAATTTAAGGTGTTGTTGGTCAATGCTGATCCTGAGACAACTGCAGGATGGCGGCTGTCATATCAAAACTAGGATTTATGTTTTTGGAGCAGGGTTTTTCGACGATGTTTCTTCCACTTAGTGTGGCAATAAGTATATGTTGTAGTGGCACAGGATTTGTTTACCAGGTATTTCTCGAATTGAACTTTCAGATAAAAATTGTAGCCTTTATTCTTTTTGTAACCAAGTGAATGTTGCATTTGAGGTTTGGGTTTGCAAGTCAACATCTTCTGAACATGTGTTTTTTAACCCCTATAATTACTACCATTTTGTATCAATGCCTGATTACCTTCCTCCTCGAATGTTAACAGCAAAGAGAACCTGCTCCATTTAGTTTTGTGTAGTGCCACCACATAACTTCAATAAGTTGTCATGGTACTTGTGTGGCAACTAAAGCTTTGGCGTGATTACATTACATTGAATCTGGTGTAGCAAACCAAGTCTATTTCTAGCTAGTTGGGAAGTTTCCATAGGAAATGGGGAGACTTGTTTAGATCTTGTCTGAAAATTACTTTATTGATGTCTTTGAAACAGACGAGGGGTTTGAAGCATGGCAGGGCTTTGTTTTTATTAACTATTGGCCTTGCAAGATAA

mRNA sequence

GGTGGCTTCGTATCTACAGACGACAACGAAGAGAACAAGAATTGATGCAATCTGAAGTTGTTGAGGAAATAATATACGGTCTGGAGTCTGGCATTCTGTTTGGGATGGCGGCTGTCATATCAAAACTAGGATTTATGTTTTTGGAGCAGGGTTTTTCGACGATGTTTCTTCCACTTAGTGTGGCAATAAGTATATGTTGTAGTGGCACAGGATTTGTTTACCAGACGAGGGGTTTGAAGCATGGCAGGGCTTTGTTTTTATTAACTATTGGCCTTGCAAGATAA

Coding sequence (CDS)

ATGCAATCTGAAGTTGTTGAGGAAATAATATACGGTCTGGAGTCTGGCATTCTGTTTGGGATGGCGGCTGTCATATCAAAACTAGGATTTATGTTTTTGGAGCAGGGTTTTTCGACGATGTTTCTTCCACTTAGTGTGGCAATAAGTATATGTTGTAGTGGCACAGGATTTGTTTACCAGACGAGGGGTTTGAAGCATGGCAGGGCTTTGTTTTTATTAACTATTGGCCTTGCAAGATAA

Protein sequence

MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQTRGLKHGRALFLLTIGLAR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10926.1Spo10926.1mRNA


Homology
[Close]
BLAST of Spo10926.1 vs. NCBI nr
Match: gi|902204796|gb|KNA14980.1| (hypothetical protein SOVF_102380 isoform A [Spinacia oleracea])

HSP 1 Score: 138.3 bits (347), Expect = 5.900e-30
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1 

		  

Query: 1  MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
          MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ
Sbjct: 1  MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60

Query: 61 TRGLKHGRALFLLT 75
          TRGLKHGRA+ + T
Sbjct: 61 TRGLKHGRAIVVST 74
[Close]
BLAST of Spo10926.1 vs. NCBI nr
Match: gi|902204797|gb|KNA14981.1| (hypothetical protein SOVF_102380 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 138.3 bits (347), Expect = 5.900e-30
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ
Sbjct: 49  MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 108

Query: 61  TRGLKHGRALFLLT 75
           TRGLKHGRA+ + T
Sbjct: 109 TRGLKHGRAIVVST 122
[Close]
BLAST of Spo10926.1 vs. NCBI nr
Match: gi|731317798|ref|XP_010669373.1| (PREDICTED: probable magnesium transporter NIPA9 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 128.3 bits (321), Expect = 6.100e-27
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           MQSEVVEEIIYGLESGILFGMAAV+SKLGF+FLEQGFS + LPLS+AISICCSGTGFVYQ
Sbjct: 163 MQSEVVEEIIYGLESGILFGMAAVVSKLGFIFLEQGFSKILLPLSIAISICCSGTGFVYQ 222

Query: 61  TRGLKHGRALFLLT 75
           T+GLKHGRA+ + T
Sbjct: 223 TKGLKHGRAVVVST 236
[Close]
BLAST of Spo10926.1 vs. NCBI nr
Match: gi|1021049116|gb|KZN06896.1| (hypothetical protein DCAR_007733 [Daucus carota subsp. sativus])

HSP 1 Score: 122.5 bits (306), Expect = 3.400e-25
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           MQSEVVEEIIYGLESGILFG+A+VISK+GF+FLEQGFS + +P+ V+ISICCSGTGFVYQ
Sbjct: 202 MQSEVVEEIIYGLESGILFGIASVISKMGFLFLEQGFSRLLVPVCVSISICCSGTGFVYQ 261

Query: 61  TRGLKHGRALFLLT 75
           TRGLKHGRA+ + T
Sbjct: 262 TRGLKHGRAIVVST 275
[Close]
BLAST of Spo10926.1 vs. NCBI nr
Match: gi|22326741|ref|NP_196757.2| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 120.9 bits (302), Expect = 9.800e-25
Identity = 56/71 (78.87%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 4   EVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQTRG 63
           EVVEEIIYGLESGILFGMA+V+SK+GF+F+EQGFSTMF+P+ ++ISICCSGTGF YQTRG
Sbjct: 166 EVVEEIIYGLESGILFGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRG 225

Query: 64  LKHGRALFLLT 75
           LKHGRA+ + T
Sbjct: 226 LKHGRAIVVST 236
[Close]
BLAST of Spo10926.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R647_SPIOL (Probable magnesium transporter (Fragment) OS=Spinacia oleracea GN=SOVF_102380 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.100e-30
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ
Sbjct: 49  MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 108

Query: 61  TRGLKHGRALFLLT 75
           TRGLKHGRA+ + T
Sbjct: 109 TRGLKHGRAIVVST 122
[Close]
BLAST of Spo10926.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R644_SPIOL (Probable magnesium transporter OS=Spinacia oleracea GN=SOVF_102380 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.100e-30
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1 

		  

Query: 1  MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
          MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ
Sbjct: 1  MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60

Query: 61 TRGLKHGRALFLLT 75
          TRGLKHGRA+ + T
Sbjct: 61 TRGLKHGRAIVVST 74
[Close]
BLAST of Spo10926.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FQ61_BETVU (Probable magnesium transporter OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g034420 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.300e-27
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           MQSEVVEEIIYGLESGILFGMAAV+SKLGF+FLEQGFS + LPLS+AISICCSGTGFVYQ
Sbjct: 163 MQSEVVEEIIYGLESGILFGMAAVVSKLGFIFLEQGFSKILLPLSIAISICCSGTGFVYQ 222

Query: 61  TRGLKHGRALFLLT 75
           T+GLKHGRA+ + T
Sbjct: 223 TKGLKHGRAVVVST 236
[Close]
BLAST of Spo10926.1 vs. UniProtKB/TrEMBL
Match: A0A166ERS1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007733 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.300e-25
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           MQSEVVEEIIYGLESGILFG+A+VISK+GF+FLEQGFS + +P+ V+ISICCSGTGFVYQ
Sbjct: 202 MQSEVVEEIIYGLESGILFGIASVISKMGFLFLEQGFSRLLVPVCVSISICCSGTGFVYQ 261

Query: 61  TRGLKHGRALFLLT 75
           TRGLKHGRA+ + T
Sbjct: 262 TRGLKHGRAIVVST 275
[Close]
BLAST of Spo10926.1 vs. UniProtKB/TrEMBL
Match: A0A078JJ86_BRANA (Probable magnesium transporter OS=Brassica napus GN=BnaAnng21200D PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.900e-25
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = 1 

		  

Query: 1   MQSEVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQ 60
           M+ EVVEEIIYGLESG+LFGMA+V+SK+GF+F+EQGFS MF+P+ ++ISICCSGTGF YQ
Sbjct: 276 MEYEVVEEIIYGLESGVLFGMASVVSKMGFVFVEQGFSAMFIPMCISISICCSGTGFFYQ 335

Query: 61  TRGLKHGRALFLLT 75
           TRGLKHGRA+ + T
Sbjct: 336 TRGLKHGRAIVVST 349
[Close]
BLAST of Spo10926.1 vs. ExPASy Swiss-Prot
Match: NIPA9_ARATH (Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana GN=At5g11960 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.100e-27
Identity = 56/71 (78.87%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 4   EVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQTRG 63
           EVVEEIIYGLESGILFGMA+V+SK+GF+F+EQGFSTMF+P+ ++ISICCSGTGF YQTRG
Sbjct: 166 EVVEEIIYGLESGILFGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRG 225

Query: 64  LKHGRALFLLT 75
           LKHGRA+ + T
Sbjct: 226 LKHGRAIVVST 236
[Close]
BLAST of Spo10926.1 vs. TAIR (Arabidopsis)
Match: AT5G11960.1 (Protein of unknown function (DUF803))

HSP 1 Score: 120.9 bits (302), Expect = 3.400e-28
Identity = 56/71 (78.87%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 4   EVVEEIIYGLESGILFGMAAVISKLGFMFLEQGFSTMFLPLSVAISICCSGTGFVYQTRG 63
           EVVEEIIYGLESGILFGMA+V+SK+GF+F+EQGFSTMF+P+ ++ISICCSGTGF YQTRG
Sbjct: 166 EVVEEIIYGLESGILFGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRG 225

Query: 64  LKHGRALFLLT 75
           LKHGRA+ + T
Sbjct: 226 LKHGRAIVVST 236
The following BLAST results are available for this feature:
BLAST of Spo10926.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902204796|gb|KNA14980.1|5.9e-3094.5hypothetical protein SOVF_1023... [more]
gi|902204797|gb|KNA14981.1|5.9e-3094.5hypothetical protein SOVF_1023... [more]
gi|731317798|ref|XP_010669373.1|6.1e-2785.1PREDICTED: probable magnesium ... [more]
gi|1021049116|gb|KZN06896.1|3.4e-2579.7hypothetical protein DCAR_0077... [more]
gi|22326741|ref|NP_196757.2|9.8e-2578.8uncharacterized protein [Arabi... [more]
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BLAST of Spo10926.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R647_SPIOL4.1e-3094.5Probable magnesium transporter... [more]
A0A0K9R644_SPIOL4.1e-3094.5Probable magnesium transporter... [more]
A0A0J8FQ61_BETVU4.3e-2785.1Probable magnesium transporter... [more]
A0A166ERS1_DAUCA2.3e-2579.7Uncharacterized protein OS=Dau... [more]
A0A078JJ86_BRANA8.9e-2574.3Probable magnesium transporter... [more]
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BLAST of Spo10926.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NIPA9_ARATH6.1e-2778.8Probable magnesium transporter... [more]
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BLAST of Spo10926.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G11960.13.4e-2878.8Protein of unknown function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008521Magnesium transporter NIPAPANTHERPTHR12570UNCHARACTERIZEDcoord: 1..74
score: 3.4
NoneNo IPR availablePANTHERPTHR12570:SF12SUBFAMILY NOT NAMEDcoord: 1..74
score: 3.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015693 magnesium ion transport
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0015095 magnesium ion transmembrane transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo012310.68Barchart | Table
Spo015780.66Barchart | Table
Spo099400.66Barchart | Table
Spo173290.66Barchart | Table