Spo10927 (gene) | SpinachBase

Overview


Name	Spo10927
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll a-b binding protein 8, chloroplastic (LHCII type I CAB-8) (Precursor)
Location	SpoScf_01974 : 57980 .. 59017 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCATGGTAAGTTCAAGCACTGTCCTTACACCAAACCCATTTGTTGGGCAAGGCAAGGGCGCCAACGGAAACACCCTTAGAGATGTCGTACCTATGGGATCCGGCAAATTTACCATGGTACGTACCTAAGTAAACTCGTTATATACAACCATACCCGCGCATTGTTGTGAGTTTTTATTCATCTATTTATTTAATTTCGACGAGTGGAGTTACTAATTTGTTTATGCATGTTGATGTTAGGGAAATGATCTATGGTACGGACCGGACAGAGTAAAATACTTGGGACCATTTTCGGCACAAACACCTTCATACTTGACTGGAGAATTCCCTGGTGATTATGGCTGGGACACTGCTGGTCTCTCTGCTGACCCTGAGGCTTTTGCCCGAAACAGGGCTCTTGAGGTTTCTCTTCTTTACTTCTTACTCTCTCTCTGTCCCAAATTACTTGTCCCATTTTATCTGGACAAGCTTGTTAATACACCAGTTTTACCATGAATATCTGAAAAACATATATTTGTTCAGGTCATCCATGGACGTTGGGCAATGCTTGGGGCATTAGGCTGCCTAACCCCAGAAGTGTTAGAGAAATGGGTGAAAGTGGACTTTAAGGAGCCAGTTTGGTTCAAGGCTGGGGCCCAGATTTTCTCCGAAGGTGGGCTTGACTACTTGGGCAACCCCAACCTAGTCCATGCTCAAAGCATTCTAGCCGTACTCGGGTTCCAAGTGCTGTTAATGGGTCTCGTTGAGAGCTTCCGCATTAACGGGCTGGATGGAGTTGGGGATGGCAACGACCTCTACCCAGGCGGCCAATACTTTGACCCATTGGGCTTAGCTGATGACCCGGTTACCTTTGCAGAACTAAAGGTGAAGGAGATCAAGAATGGAAGGTTAGCTATGTTTTCCATGTTCGGTTTCTTTGTGCAGGCGATCATAACTGGAAAAGGTCCCTTGGAGAACCTCTTGGATCACCTTGATAACCCTGTGGCAAACAACGCCTGGGTATATGCCACCAAGTTTGTTCCTGGATCATAA

mRNA sequence

ATGGCAACCATGGTAAGTTCAAGCACTGTCCTTACACCAAACCCATTTGTTGGGCAAGGCAAGGGCGCCAACGGAAACACCCTTAGAGATGTCGTACCTATGGGATCCGGCAAATTTACCATGGGAAATGATCTATGGTACGGACCGGACAGAGTAAAATACTTGGGACCATTTTCGGCACAAACACCTTCATACTTGACTGGAGAATTCCCTGGTGATTATGGCTGGGACACTGCTGGTCTCTCTGCTGACCCTGAGGCTTTTGCCCGAAACAGGGCTCTTGAGGTCATCCATGGACGTTGGGCAATGCTTGGGGCATTAGGCTGCCTAACCCCAGAAGTGTTAGAGAAATGGGTGAAAGTGGACTTTAAGGAGCCAGTTTGGTTCAAGGCTGGGGCCCAGATTTTCTCCGAAGGTGGGCTTGACTACTTGGGCAACCCCAACCTAGTCCATGCTCAAAGCATTCTAGCCGTACTCGGGTTCCAAGTGCTGTTAATGGGTCTCGTTGAGAGCTTCCGCATTAACGGGCTGGATGGAGTTGGGGATGGCAACGACCTCTACCCAGGCGGCCAATACTTTGACCCATTGGGCTTAGCTGATGACCCGGTTACCTTTGCAGAACTAAAGGTGAAGGAGATCAAGAATGGAAGGTTAGCTATGTTTTCCATGTTCGGTTTCTTTGTGCAGGCGATCATAACTGGAAAAGGTCCCTTGGAGAACCTCTTGGATCACCTTGATAACCCTGTGGCAAACAACGCCTGGGTATATGCCACCAAGTTTGTTCCTGGATCATAA

Coding sequence (CDS)

ATGGCAACCATGGTAAGTTCAAGCACTGTCCTTACACCAAACCCATTTGTTGGGCAAGGCAAGGGCGCCAACGGAAACACCCTTAGAGATGTCGTACCTATGGGATCCGGCAAATTTACCATGGGAAATGATCTATGGTACGGACCGGACAGAGTAAAATACTTGGGACCATTTTCGGCACAAACACCTTCATACTTGACTGGAGAATTCCCTGGTGATTATGGCTGGGACACTGCTGGTCTCTCTGCTGACCCTGAGGCTTTTGCCCGAAACAGGGCTCTTGAGGTCATCCATGGACGTTGGGCAATGCTTGGGGCATTAGGCTGCCTAACCCCAGAAGTGTTAGAGAAATGGGTGAAAGTGGACTTTAAGGAGCCAGTTTGGTTCAAGGCTGGGGCCCAGATTTTCTCCGAAGGTGGGCTTGACTACTTGGGCAACCCCAACCTAGTCCATGCTCAAAGCATTCTAGCCGTACTCGGGTTCCAAGTGCTGTTAATGGGTCTCGTTGAGAGCTTCCGCATTAACGGGCTGGATGGAGTTGGGGATGGCAACGACCTCTACCCAGGCGGCCAATACTTTGACCCATTGGGCTTAGCTGATGACCCGGTTACCTTTGCAGAACTAAAGGTGAAGGAGATCAAGAATGGAAGGTTAGCTATGTTTTCCATGTTCGGTTTCTTTGTGCAGGCGATCATAACTGGAAAAGGTCCCTTGGAGAACCTCTTGGATCACCTTGATAACCCTGTGGCAAACAACGCCTGGGTATATGCCACCAAGTTTGTTCCTGGATCATAA

Protein sequence

MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLENLLDHLDNPVANNAWVYATKFVPGS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10927.1	Spo10927.1	mRNA

Homology

[Close]

BLAST of Spo10927.1 vs. NCBI nr
Match: gi|902164600|gb|KNA06987.1| (hypothetical protein SOVF_176060 [Spinacia oleracea])

HSP 1 Score: 554.7 bits (1428), Expect = 8.800e-155
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA
Sbjct: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN
Sbjct: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Spo10927.1 vs. NCBI nr
Match: gi|731365261|ref|XP_010694428.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 534.3 bits (1375), Expect = 1.200e-148
Identity = 250/264 (94.70%), Postives = 259/264 (98.11%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA+M+SS TVL P PF+GQG+GANGNTLRDVVP+GS KFTMGNDLWYGPDRVKYLGPFSA
Sbjct: 1   MASMLSSGTVLRPTPFLGQGRGANGNTLRDVVPVGSAKFTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+TPEVLEKWVK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVESFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVESFRINGLDGV 180

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Spo10927.1 vs. NCBI nr
Match: gi|225461315|ref|XP_002284493.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera])

HSP 1 Score: 519.2 bits (1336), Expect = 4.100e-144
Identity = 242/264 (91.67%), Postives = 254/264 (96.21%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SSSTVL P PF+GQ +GAN N LRDVVPMG+GK+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 3   MAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 62

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+TPEVLEKW++
Sbjct: 63  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 122

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEP+WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGL GV
Sbjct: 123 VDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 182

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           GDGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 183 GDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 243 LLDHLDNPVANNAWVYATKFVPGS 266

[Close]

BLAST of Spo10927.1 vs. NCBI nr
Match: gi|703119118|ref|XP_010101783.1| (Chlorophyll a-b binding protein 13 [Morus notabilis])

HSP 1 Score: 516.2 bits (1328), Expect = 3.500e-143
Identity = 240/264 (90.91%), Postives = 253/264 (95.83%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SSS +L P PF+GQ +G +  +LRDVVPMG+GK+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+TPEVLEKWVK
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Spo10927.1 vs. NCBI nr
Match: gi|595864657|ref|XP_007211811.1| (hypothetical protein PRUPE_ppa009987mg [Prunus persica])

HSP 1 Score: 515.8 bits (1327), Expect = 4.600e-143
Identity = 240/264 (90.91%), Postives = 254/264 (96.21%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SSST+L P PF+GQ +G + NTLRDV PMG+GK+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 6   MAATASSSTLLRPTPFLGQTRGPSFNTLRDVAPMGTGKYTMGNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+TPEVLEKWV+
Sbjct: 66  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 125

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGV 185

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 246 LLDHLDNPVANNAWVYATKFVPGS 269

[Close]

BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIA4_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_176060 PE=3 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 6.200e-155
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA
Sbjct: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN
Sbjct: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEG8_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093140 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 8.600e-149
Identity = 250/264 (94.70%), Postives = 259/264 (98.11%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA+M+SS TVL P PF+GQG+GANGNTLRDVVP+GS KFTMGNDLWYGPDRVKYLGPFSA
Sbjct: 1   MASMLSSGTVLRPTPFLGQGRGANGNTLRDVVPVGSAKFTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+TPEVLEKWVK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVESFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVESFRINGLDGV 180

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
Match: F6H2E4_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_19s0014g03660 PE=3 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 2.900e-144
Identity = 242/264 (91.67%), Postives = 254/264 (96.21%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SSSTVL P PF+GQ +GAN N LRDVVPMG+GK+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 3   MAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 62

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+TPEVLEKW++
Sbjct: 63  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 122

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEP+WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGL GV
Sbjct: 123 VDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 182

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           GDGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 183 GDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 243 LLDHLDNPVANNAWVYATKFVPGS 266

[Close]

BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
Match: W9RGN8_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 2.400e-143
Identity = 240/264 (90.91%), Postives = 253/264 (95.83%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SSS +L P PF+GQ +G +  +LRDVVPMG+GK+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+TPEVLEKWVK
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
Match: M5X1T0_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa009987mg PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 3.200e-143
Identity = 240/264 (90.91%), Postives = 254/264 (96.21%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SSST+L P PF+GQ +G + NTLRDV PMG+GK+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 6   MAATASSSTLLRPTPFLGQTRGPSFNTLRDVAPMGTGKYTMGNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+TPEVLEKWV+
Sbjct: 66  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 125

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGV 185

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPGS
Sbjct: 246 LLDHLDNPVANNAWVYATKFVPGS 269

[Close]

BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
Match: CB3_ARATH (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 3.600e-140
Identity = 231/263 (87.83%), Postives = 248/263 (94.30%), Query Frame = 1

		  
Query: 2   ATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSAQ 61
           +T  SSS+VLTP  F+GQ K ++ N LRDVV +GS K+TMGNDLWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVKV 121
           TPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GC+TPEVL+KWV+V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 DGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLENL 241
           +GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFVPGS 265
           LDHLDNPVANNAW +ATKF PG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 1.200e-138
Identity = 233/264 (88.26%), Postives = 245/264 (92.80%), Query Frame = 1

		  
Query: 1   MATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSA 60
           MA   SS+TV+   PF+GQ K  N N LRDVV MGS +FTM NDLWYGPDRVKYLGPFSA
Sbjct: 4   MAATASSTTVVKATPFLGQTK--NANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSA 63

Query: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+ PEVLEKWVK
Sbjct: 64  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVK 123

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGV 180
           VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGL GV
Sbjct: 124 VDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 183

Query: 181 GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLEN 240
           G+GNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLEN
Sbjct: 184 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243

Query: 241 LLDHLDNPVANNAWVYATKFVPGS 265
           LLDHLDNPVANNAWVYATKFVPG+
Sbjct: 244 LLDHLDNPVANNAWVYATKFVPGA 265

[Close]

BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 8.600e-134
Identity = 223/260 (85.77%), Postives = 240/260 (92.31%), Query Frame = 1

		  
Query: 6   SSSTVLTPNPFV-GQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSAQTPS 65
           +S  V+   PF+ GQG+ A+ + LRD+    +G+ TMGNDLWYGPDRVKYLGPFSAQTPS
Sbjct: 9   ASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPS 68

Query: 66  YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVKVDFK 125
           YL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KWV V+FK
Sbjct: 69  YLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFK 128

Query: 126 EPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGVGDGN 185
           EPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVE FRINGLDGVG+GN
Sbjct: 129 EPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGN 188

Query: 186 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLENLLDH 245
           DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLENL DH
Sbjct: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDH 248

Query: 246 LDNPVANNAWVYATKFVPGS 265
           LD+PVANNAWV+ATKF PGS
Sbjct: 249 LDDPVANNAWVFATKFAPGS 268

[Close]

BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.800e-100
Identity = 184/266 (69.17%), Postives = 207/266 (77.82%), Query Frame = 1

		  
Query: 7   SSTVLTPNPFVGQGKGANGNT-LRDVVPMGSGKFTMGN-------DLWYGPDRVKYLGPF 66
           ++  +  + FVGQ  G + N  +R V   G G+ TM          +WYG DR KYLGPF
Sbjct: 2   ATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPF 61

Query: 67  SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKW 126
           S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K 
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QV+LMG VE +R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-G 181

Query: 187 GVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGP 246
            +G+G D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGP
Sbjct: 182 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFVPG 264
           +ENL DH+++PVANNAW YAT FVPG
Sbjct: 242 IENLSDHINDPVANNAWAYATNFVPG 264

[Close]

BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 6.900e-99
Identity = 174/220 (79.09%), Postives = 189/220 (85.91%), Query Frame = 1

		  
Query: 45  LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 104
           +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAML
Sbjct: 46  IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 105

Query: 105 GALGCLTPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVL 164
           GALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QV+
Sbjct: 106 GALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVV 165

Query: 165 LMGLVESFRINGLDGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 224
           LMG VE +R+ G   +G+G D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSM
Sbjct: 166 LMGFVEGYRVGG-GPLGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSM 225

Query: 225 FGFFVQAIITGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
           FGFFVQAI+TGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPG 262

[Close]

BLAST of Spo10927.1 vs. TAIR (Arabidopsis)
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 498.8 bits (1283), Expect = 2.000e-141
Identity = 231/263 (87.83%), Postives = 248/263 (94.30%), Query Frame = 1

		  
Query: 2   ATMVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDLWYGPDRVKYLGPFSAQ 61
           +T  SSS+VLTP  F+GQ K ++ N LRDVV +GS K+TMGNDLWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKWVKV 121
           TPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GC+TPEVL+KWV+V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 DGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGPLENL 241
           +GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI+TGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFVPGS 265
           LDHLDNPVANNAW +ATKF PG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of Spo10927.1 vs. TAIR (Arabidopsis)
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 354.4 bits (908), Expect = 6.200e-98
Identity = 178/267 (66.67%), Postives = 203/267 (76.03%), Query Frame = 1

		  
Query: 7   SSTVLTPNPFVGQGKGANGNTL-RDVVPMGSGKFTMGN-------DLWYGPDRVKYLGPF 66
           +++ +  + F GQ      N L R V   G G+ TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKW 126
           S  TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG +E +RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGP 246
            +G+G D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAI+TGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFVPGS 265
           +ENL DHL +PVANNAW YAT FVPG+
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPGN 265

[Close]

BLAST of Spo10927.1 vs. TAIR (Arabidopsis)
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 353.2 bits (905), Expect = 1.400e-97
Identity = 175/266 (65.79%), Postives = 204/266 (76.69%), Query Frame = 1

		  
Query: 7   SSTVLTPNPFVGQ-GKGANGNTLRDVVPMGSGKFTMGN-------DLWYGPDRVKYLGPF 66
           +++ +  + F GQ     + + ++ V  +G G+ TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPEVLEKW 126
           S  TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG +E +RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIITGKGP 246
            +G+G D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAI+TGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFVPG 264
           +ENL DHL +PVANNAW YAT FVPG
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPG 264

[Close]

BLAST of Spo10927.1 vs. TAIR (Arabidopsis)
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2)

HSP 1 Score: 350.1 bits (897), Expect = 1.200e-96
Identity = 178/271 (65.68%), Postives = 204/271 (75.28%), Query Frame = 1

		  
Query: 4   MVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDL----------WYGPDRVK 63
           M +S+  L+   F G  K  N +     V +GSG+ TM   +          WYG DRVK
Sbjct: 1   MAASTMALSSPAFAG--KAVNLSPAASEV-LGSGRVTMRKTVAKPKGPSGSPWYGSDRVK 60

Query: 64  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPE 123
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE
Sbjct: 61  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 124 VLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFR 183
           +L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VE +R
Sbjct: 121 LLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 180

Query: 184 INGLDGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAII 243
           + G   +G+  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAI+
Sbjct: 181 VAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240

Query: 244 TGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
           TGKGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 241 TGKGPIENLADHLADPVNNNAWAFATNFVPG 266

[Close]

BLAST of Spo10927.1 vs. TAIR (Arabidopsis)
Match: AT1G29910.1 (chlorophyll A/B binding protein 3)

HSP 1 Score: 350.1 bits (897), Expect = 1.200e-96
Identity = 178/271 (65.68%), Postives = 204/271 (75.28%), Query Frame = 1

		  
Query: 4   MVSSSTVLTPNPFVGQGKGANGNTLRDVVPMGSGKFTMGNDL----------WYGPDRVK 63
           M +S+  L+   F G  K  N +     V +GSG+ TM   +          WYG DRVK
Sbjct: 1   MAASTMALSSPAFAG--KAVNLSPAASEV-LGSGRVTMRKTVAKPKGPSGSPWYGSDRVK 60

Query: 64  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCLTPE 123
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE
Sbjct: 61  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 124 VLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVESFR 183
           +L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VE +R
Sbjct: 121 LLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 180

Query: 184 INGLDGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAII 243
           + G   +G+  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAI+
Sbjct: 181 VAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240

Query: 244 TGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
           TGKGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 241 TGKGPIENLADHLADPVNNNAWAFATNFVPG 266

The following BLAST results are available for this feature:

BLAST of Spo10927.1 vs. NCBI nr
BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
BLAST of Spo10927.1 vs. TAIR (Arabidopsis)

BLAST of Spo10927.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902164600\|gb\|KNA06987.1\|	8.8e-155	100.	hypothetical protein SOVF_1760...	[more]
gi\|731365261\|ref\|XP_010694428.1\|	1.2e-148	94.7	PREDICTED: chlorophyll a-b bin...	[more]
gi\|225461315\|ref\|XP_002284493.1\|	4.1e-144	91.6	PREDICTED: chlorophyll a-b bin...	[more]
gi\|703119118\|ref\|XP_010101783.1\|	3.5e-143	90.9	Chlorophyll a-b binding protei...	[more]
gi\|595864657\|ref\|XP_007211811.1\|	4.6e-143	90.9	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo10927.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QIA4_SPIOL	6.2e-155	100.	Chlorophyll a-b binding protei...	[more]
A0A0J8BEG8_BETVU	8.6e-149	94.7	Chlorophyll a-b binding protei...	[more]
F6H2E4_VITVI	2.9e-144	91.6	Chlorophyll a-b binding protei...	[more]
W9RGN8_9ROSA	2.4e-143	90.9	Chlorophyll a-b binding protei...	[more]
M5X1T0_PRUPE	3.2e-143	90.9	Chlorophyll a-b binding protei...	[more]

BLAST of Spo10927.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
CB3_ARATH	3.6e-140	87.8	Chlorophyll a-b binding protei...	[more]
CB23_SOLLC	1.2e-138	88.2	Chlorophyll a-b binding protei...	[more]
CB23_HORVU	8.6e-134	85.7	Chlorophyll a-b binding protei...	[more]
CB24_SOLLC	4.8e-100	69.1	Chlorophyll a-b binding protei...	[more]
CB23_ORYSJ	6.9e-99	79.0	Chlorophyll a-b binding protei...	[more]

BLAST of Spo10927.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G54270.1	2.0e-141	87.8	light-harvesting chlorophyll B...	[more]
AT2G05100.1	6.2e-98	66.6	photosystem II light harvestin...	[more]
AT2G05070.1	1.4e-97	65.7	photosystem II light harvestin...	[more]
AT1G29920.1	1.2e-96	65.6	chlorophyll A/B-binding protei...	[more]
AT1G29910.1	1.2e-96	65.6	chlorophyll A/B binding protei...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..264 score: 1.9E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..230 score: 2.5
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 55..256 score: 3.5
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 45..261 score: 2.48
None	No IPR available	PANTHER	PTHR21649:SF11	SUBFAMILY NOT NAMED	coord: 1..264 score: 1.9E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009657	plastid organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0005773	vacuole
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25138	0.88	Barchart \| Table
Spo20441	0.81	Barchart \| Table
Spo15812	0.81	Barchart \| Table
Spo13700	0.76	Barchart \| Table
Spo10537	0.76	Barchart \| Table
Spo10529	0.76	Barchart \| Table
Spo21021	0.75	Barchart \| Table
Spo19908	0.73	Barchart \| Table
Spo06031	0.70	Barchart \| Table
Spo02439	0.69	Barchart \| Table
Spo02453	0.69	Barchart \| Table
Spo07501	0.69	Barchart \| Table
Spo11310	0.69	Barchart \| Table
Spo18502	0.69	Barchart \| Table
Spo03024	0.68	Barchart \| Table
Spo17046	0.68	Barchart \| Table
Spo19731	0.67	Barchart \| Table
Spo07603	0.67	Barchart \| Table
Spo05296	0.66	Barchart \| Table
Spo16821	0.66	Barchart \| Table
Spo14852	0.65	Barchart \| Table
Spo16925	0.65	Barchart \| Table