Spo10978 (gene)

Overview
NameSpo10978
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING/U-box superfamily protein, putative
Locationchr4 : 117598409 .. 117600291 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGGGGGTATAGAGATTCTCCATTTCATCAGGATGAGCAACTCAGATGGAACCATCATTCTATTTTTCAAGACGTAAGGCTAGTAGTTGAATTATATAACTTTGAATGAAGTGCTATAATCTTATTTCATGTTGTTTGATGTAAATATGACTGCAGAACCCAAGAAATGGCGCACCGGCTGGATACAGGCCGTTTGAGGAAACACCTGTCATAAGACCCTTTGGCCTAACAAGGTAAATCTTAAAAATTCTTCACATGATATGCACATGTAAGGAAAAGGAAAAGGAAAAGATAAAGATGTGAGATGGTGTACAGTTCACCTTCGATGTGTTGGGTAAATCTAGCATATTCGTTTGTTTTTGTGTTTAGAGCAAGATTAGCGCTAGTCTGAGCAACGGTCTTATTGAGTATTAATCTAAGACCTCCCATTTAAGTGGAAGAGTATGACAAAAGTTTGAGCAAGAGTCTTGGAATTCCAAGACTCTACTTAAGACTTTTAAACCGTATATTCAATCTTAATTATGATTATTTTTTCTTTTTTATTTTATTGTTTTCTTAAGTTTGAGGAGTTTTGAATAAGTACGAGGGGTGAAGTGGAAAAATTAAGTAAGTCTGAAAGGGTCTCAACAAGAATATGAGAAATTAAAAATTAATAAAAAAGATTATGTGGAAGTCTTAGCTTATACCAGCGCTAATCTTGCTCTTAGAATAAGTTTAGAATGATATTATGTTGATTGTCTATATGTATAGCAATAGTGGTCCTACATTTTTTATAATTATGATGTGAAATTCAGACGAAAAAGGACATGTTTGGAACTTTAGATTAATAGATAAAGACTAATATGTTGCGTTAAACGGATATTGTGTTGTATCAGTAGTTGATTAGACCTGTAAGTAAGCATGAACCTGCAACACGGACAGATTTACAAACTCTGATTGCTGATGTTGAATATGGAGATTCTGTTTTTTAGAACTGAGGCCTAATTATTGCAGTTTTCCCTCGGATTTTTATCCTGCAACACGGTTTGTAATTCTCAGCAACAACACAGGTCACGGTGACGGAATGAACCCTAGGTTTCCACAATCTTCACAGAGGATAATACCCAGATACACTAGCAATGAAAGCACGCATGTACCTACAGAAACCGATGATGATTCAAAGCTGACAAAAGAAGAGCAAGTGATCGTCCTTAAGAAACTAAAGAAAGAAATATACAATCCAATGCCTAAGATTCTGGCAAGAAGAGTGAGCTTATACTACAGGGATGTTAACAGAGACATTACTAGCAAGTCAATGGAAAAGCATAAAGATGAAGATGGGAAAAGTTGTGCTGTTTGTTTAGAGGATTTTGAAGCTAGAGAAGAAGTGATGGTGACACCTTGCAGTCATATGTTTCATGAAGAATGCGTAGTACCTTGGGTGAAAAACCATGGAGATTGTCCTGTTTGTAGGGCCACTTTTTATGAGAGGAGAGAAAGACTAATTAGAGGCCAGCCATTCAACGACAACAACAGAGGGGTTAGGGTACCTGCTCTGTTTTCTGATGAGCTCCTTTCTCTTTTCCAATCACTGGATGAAGCTTTTCCTTGGAGATTTTAGAATTAATTTCTCCCAGATTTTACAAAGTTATGCCATGGCATAGAGGATAATTAATCGTGTAATGTGTAGTATCAAAACAAGTACAAGTATAATATATATATTTCGAAAATGATAAAGTTCGCAACATGCGACCTTTAAGTCGTGTCACAATGATGACATGGCATGCTTATGTGTCATGATTTAAATTGGAATCTAAAATATTTAACTTATAAAAATCCATTATATATGTTTCAAAAAAGGTAGGAAAATCTTAATATTCTAATTTGTTTCCTTCTTTA

mRNA sequence

ATGATCAGGGGGTATAGAGATTCTCCATTTCATCAGGATGAGCAACTCAGATGGAACCATCATTCTATTTTTCAAGACAACCCAAGAAATGGCGCACCGGCTGGATACAGGCCGTTTGAGGAAACACCTGTCATAAGACCCTTTGGCCTAACAAGTTTTCCCTCGGATTTTTATCCTGCAACACGGTTTGTAATTCTCAGCAACAACACAGGTCACGGTGACGGAATGAACCCTAGGTTTCCACAATCTTCACAGAGGATAATACCCAGATACACTAGCAATGAAAGCACGCATGTACCTACAGAAACCGATGATGATTCAAAGCTGACAAAAGAAGAGCAAGTGATCGTCCTTAAGAAACTAAAGAAAGAAATATACAATCCAATGCCTAAGATTCTGGCAAGAAGAGTGAGCTTATACTACAGGGATGTTAACAGAGACATTACTAGCAAGTCAATGGAAAAGCATAAAGATGAAGATGGGAAAAGTTGTGCTGTTTGTTTAGAGGATTTTGAAGCTAGAGAAGAAGTGATGGTGACACCTTGCAGTCATATGTTTCATGAAGAATGCGTAGTACCTTGGGTGAAAAACCATGGAGATTGTCCTGTTTGTAGGGCCACTTTTTATGAGAGGAGAGAAAGACTAATTAGAGGCCAGCCATTCAACGACAACAACAGAGGGGTTAGGGTACCTGCTCTGTTTTCTGATGAGCTCCTTTCTCTTTTCCAATCACTGGATGAAGCTTTTCCTTGGAGATTTTAGAATTAATTTCTCCCAGATTTTACAAAGTTATGCCATGGCATAGAGGATAATTAATCGTGTAATGTGTAGTATCAAAACAAGTACAAGTATAATATATATATTTCGAAAATGATAAAGTTCGCAACATGCGACCTTTAAGTCGTGTCACAATGATGACATGGCATGCTTATGTGTCATGATTTAAATTGGAATCTAAAATATTTAACTTATAAAAATCCATTATATATGTTTCAAAAAAGGTAGGAAAATCTTAATATTCTAATTTGTTTCCTTCTTTA

Coding sequence (CDS)

ATGATCAGGGGGTATAGAGATTCTCCATTTCATCAGGATGAGCAACTCAGATGGAACCATCATTCTATTTTTCAAGACAACCCAAGAAATGGCGCACCGGCTGGATACAGGCCGTTTGAGGAAACACCTGTCATAAGACCCTTTGGCCTAACAAGTTTTCCCTCGGATTTTTATCCTGCAACACGGTTTGTAATTCTCAGCAACAACACAGGTCACGGTGACGGAATGAACCCTAGGTTTCCACAATCTTCACAGAGGATAATACCCAGATACACTAGCAATGAAAGCACGCATGTACCTACAGAAACCGATGATGATTCAAAGCTGACAAAAGAAGAGCAAGTGATCGTCCTTAAGAAACTAAAGAAAGAAATATACAATCCAATGCCTAAGATTCTGGCAAGAAGAGTGAGCTTATACTACAGGGATGTTAACAGAGACATTACTAGCAAGTCAATGGAAAAGCATAAAGATGAAGATGGGAAAAGTTGTGCTGTTTGTTTAGAGGATTTTGAAGCTAGAGAAGAAGTGATGGTGACACCTTGCAGTCATATGTTTCATGAAGAATGCGTAGTACCTTGGGTGAAAAACCATGGAGATTGTCCTGTTTGTAGGGCCACTTTTTATGAGAGGAGAGAAAGACTAATTAGAGGCCAGCCATTCAACGACAACAACAGAGGGGTTAGGGTACCTGCTCTGTTTTCTGATGAGCTCCTTTCTCTTTTCCAATCACTGGATGAAGCTTTTCCTTGGAGATTTTAG

Protein sequence

MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPATRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLSLFQSLDEAFPWRF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10978.1Spo10978.1mRNA


Homology
[Close]
BLAST of Spo10978.1 vs. NCBI nr
Match: gi|902214030|gb|KNA17403.1| (hypothetical protein SOVF_080190 isoform A [Spinacia oleracea])

HSP 1 Score: 535.0 bits (1377), Expect = 6.900e-149
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1 

		  

Query: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60
           MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA
Sbjct: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60

Query: 61  TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120
           TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK
Sbjct: 61  TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120

Query: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180
           LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT
Sbjct: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180

Query: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 240
           PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS
Sbjct: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 240

Query: 241 LFQSLDEAFPWRF 254
           LFQSLDEAFPWRF
Sbjct: 241 LFQSLDEAFPWRF 253
[Close]
BLAST of Spo10978.1 vs. NCBI nr
Match: gi|902214031|gb|KNA17404.1| (hypothetical protein SOVF_080190 isoform B [Spinacia oleracea])

HSP 1 Score: 493.8 bits (1270), Expect = 1.800e-136
Identity = 238/253 (94.07%), Postives = 238/253 (94.07%), Query Frame = 1 

		  

Query: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60
           MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTS        
Sbjct: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTS-------- 60

Query: 61  TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120
                  NNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK
Sbjct: 61  -------NNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120

Query: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180
           LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT
Sbjct: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180

Query: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 240
           PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS
Sbjct: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 238

Query: 241 LFQSLDEAFPWRF 254
           LFQSLDEAFPWRF
Sbjct: 241 LFQSLDEAFPWRF 238
[Close]
BLAST of Spo10978.1 vs. NCBI nr
Match: gi|731356537|ref|XP_010689727.1| (PREDICTED: RING finger protein mug145-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 334.0 bits (855), Expect = 2.400e-88
Identity = 171/261 (65.52%), Postives = 197/261 (75.48%), Query Frame = 1 

		  

Query: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60
           M+RGYRDS  H D QLRW+H  + QDNPR GAP GYRP EE  V+RPFGLTS P D Y A
Sbjct: 1   MMRGYRDSLSHGDGQLRWDHPFVSQDNPRYGAPIGYRPLEERSVLRPFGLTSIPMDPYAA 60

Query: 61  TRFVILSNNTGHGDGMNPRFPQS--SQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVL 120
           TR ++LSNNTGHG  ++PR PQ   SQ++IPRY       +  ETD    +T+EEQ IVL
Sbjct: 61  TRMMMLSNNTGHG--VSPRLPQIQYSQQLIPRY-------IGQETDGSKLITREEQEIVL 120

Query: 121 KKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVM 180
           KKLKK+IYNPMPKILARRVSLYYRD NRD  SK MEKH+DE+ KSCAVCLEDFE REEVM
Sbjct: 121 KKLKKQIYNPMPKILARRVSLYYRDPNRDSNSKEMEKHRDEERKSCAVCLEDFEPREEVM 180

Query: 181 VTPCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFN-DNNRGVRVPA----- 240
           +TPC+HMFHEEC+VPWVK+HG CPVCRA F+ERRE    G   N D+ + V  PA     
Sbjct: 181 LTPCTHMFHEECIVPWVKDHGKCPVCRAKFFERRE---NGSASNIDSRQVVHQPAADHRL 240

Query: 241 LFSDELLSLFQSLDEAFPWRF 254
           LFSDELLS+ Q++DEAF WRF
Sbjct: 241 LFSDELLSVIQAMDEAFSWRF 249
[Close]
BLAST of Spo10978.1 vs. NCBI nr
Match: gi|870843933|gb|KMS97012.1| (hypothetical protein BVRB_7g179590 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 200.7 bits (509), Expect = 3.100e-48
Identity = 100/156 (64.10%), Postives = 118/156 (75.64%), Query Frame = 1 

		  

Query: 56  DFYPATRFVILSNNTGHGDGMNPRFPQS-----SQRIIPRYTSNESTHVPTETDDDSKLT 115
           D Y A R ++L+NNTG G  ++PR P       SQ++IPRY       +  ETD    +T
Sbjct: 2   DPYAAIRMMMLNNNTGQG--VSPRLPLPQIQYYSQQLIPRY-------IVQETDGSKLIT 61

Query: 116 KEEQVIVLKKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLED 175
           +EEQ IVLKKLKK+ YNP+PKILARRVSLYYRD+NRD  SK+MEKH+DE+ KSCAVCLED
Sbjct: 62  REEQEIVLKKLKKKFYNPIPKILARRVSLYYRDLNRDSNSKAMEKHRDEERKSCAVCLED 121

Query: 176 FEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRA 207
           FE REEVM+TPC+HMFHEEC  PWVK HG CPVCRA
Sbjct: 122 FEPREEVMLTPCTHMFHEECTAPWVKEHGKCPVCRA 148
[Close]
BLAST of Spo10978.1 vs. NCBI nr
Match: gi|590692552|ref|XP_007044087.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 187.2 bits (474), Expect = 3.600e-44
Identity = 103/218 (47.25%), Postives = 131/218 (60.09%), Query Frame = 1 

		  

Query: 40  EETPVIRPFGLTSFPSDFYPATR------FVILSNNTGHGDGMNPRFPQSSQRIIPRYTS 99
           EE    RPF L+ FP    P TR       V L N       +NPRF    QR   +   
Sbjct: 63  EERVTTRPFSLSGFPD--LPRTRTRTPVQIVWLDNVPARA--VNPRFSGPLQRFTVQQVQ 122

Query: 100 NESTHVPTETDDDSKLTKEEQVIVLKKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSM 159
             ++  P +  +DS+  ++EQ  VL KLKKEIYNP+PK + RR+S+YYRD NR       
Sbjct: 123 LPAS--PAQ-QEDSRSARDEQSNVLSKLKKEIYNPIPKQMTRRLSMYYRDQNRSNLYNEK 182

Query: 160 EKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRATFYERRE 219
           E+ KDEDGK CA+CLEDFE RE+VM+TPC HMFHEEC+VPWVK+HG CPVCR    E R 
Sbjct: 183 EREKDEDGKRCAICLEDFEPREQVMLTPCDHMFHEECIVPWVKSHGQCPVCRFVLSE-RI 242

Query: 220 RLIRGQPFNDNNRGVRVPALFSDELLSLFQSLDEAFPW 252
           R       N+N   V    LF+ EL+S+ ++++EAF W
Sbjct: 243 RQNASSISNNNASNVAATDLFAGELISIIRAMEEAFLW 272
[Close]
BLAST of Spo10978.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD89_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080190 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 4.800e-149
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1 

		  

Query: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60
           MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA
Sbjct: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60

Query: 61  TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120
           TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK
Sbjct: 61  TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120

Query: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180
           LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT
Sbjct: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180

Query: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 240
           PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS
Sbjct: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 240

Query: 241 LFQSLDEAFPWRF 254
           LFQSLDEAFPWRF
Sbjct: 241 LFQSLDEAFPWRF 253
[Close]
BLAST of Spo10978.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REK9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080190 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 1.200e-136
Identity = 238/253 (94.07%), Postives = 238/253 (94.07%), Query Frame = 1 

		  

Query: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60
           MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTS        
Sbjct: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTS-------- 60

Query: 61  TRFVILSNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120
                  NNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK
Sbjct: 61  -------NNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKK 120

Query: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180
           LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT
Sbjct: 121 LKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVMVT 180

Query: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 240
           PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS
Sbjct: 181 PCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFNDNNRGVRVPALFSDELLS 238

Query: 241 LFQSLDEAFPWRF 254
           LFQSLDEAFPWRF
Sbjct: 241 LFQSLDEAFPWRF 238
[Close]
BLAST of Spo10978.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BLH7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g208950 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.600e-88
Identity = 171/261 (65.52%), Postives = 197/261 (75.48%), Query Frame = 1 

		  

Query: 1   MIRGYRDSPFHQDEQLRWNHHSIFQDNPRNGAPAGYRPFEETPVIRPFGLTSFPSDFYPA 60
           M+RGYRDS  H D QLRW+H  + QDNPR GAP GYRP EE  V+RPFGLTS P D Y A
Sbjct: 1   MMRGYRDSLSHGDGQLRWDHPFVSQDNPRYGAPIGYRPLEERSVLRPFGLTSIPMDPYAA 60

Query: 61  TRFVILSNNTGHGDGMNPRFPQS--SQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVL 120
           TR ++LSNNTGHG  ++PR PQ   SQ++IPRY       +  ETD    +T+EEQ IVL
Sbjct: 61  TRMMMLSNNTGHG--VSPRLPQIQYSQQLIPRY-------IGQETDGSKLITREEQEIVL 120

Query: 121 KKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLEDFEAREEVM 180
           KKLKK+IYNPMPKILARRVSLYYRD NRD  SK MEKH+DE+ KSCAVCLEDFE REEVM
Sbjct: 121 KKLKKQIYNPMPKILARRVSLYYRDPNRDSNSKEMEKHRDEERKSCAVCLEDFEPREEVM 180

Query: 181 VTPCSHMFHEECVVPWVKNHGDCPVCRATFYERRERLIRGQPFN-DNNRGVRVPA----- 240
           +TPC+HMFHEEC+VPWVK+HG CPVCRA F+ERRE    G   N D+ + V  PA     
Sbjct: 181 LTPCTHMFHEECIVPWVKDHGKCPVCRAKFFERRE---NGSASNIDSRQVVHQPAADHRL 240

Query: 241 LFSDELLSLFQSLDEAFPWRF 254
           LFSDELLS+ Q++DEAF WRF
Sbjct: 241 LFSDELLSVIQAMDEAFSWRF 249
[Close]
BLAST of Spo10978.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAQ5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179590 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.200e-48
Identity = 100/156 (64.10%), Postives = 118/156 (75.64%), Query Frame = 1 

		  

Query: 56  DFYPATRFVILSNNTGHGDGMNPRFPQS-----SQRIIPRYTSNESTHVPTETDDDSKLT 115
           D Y A R ++L+NNTG G  ++PR P       SQ++IPRY       +  ETD    +T
Sbjct: 2   DPYAAIRMMMLNNNTGQG--VSPRLPLPQIQYYSQQLIPRY-------IVQETDGSKLIT 61

Query: 116 KEEQVIVLKKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSMEKHKDEDGKSCAVCLED 175
           +EEQ IVLKKLKK+ YNP+PKILARRVSLYYRD+NRD  SK+MEKH+DE+ KSCAVCLED
Sbjct: 62  REEQEIVLKKLKKKFYNPIPKILARRVSLYYRDLNRDSNSKAMEKHRDEERKSCAVCLED 121

Query: 176 FEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRA 207
           FE REEVM+TPC+HMFHEEC  PWVK HG CPVCRA
Sbjct: 122 FEPREEVMLTPCTHMFHEECTAPWVKEHGKCPVCRA 148
[Close]
BLAST of Spo10978.1 vs. UniProtKB/TrEMBL
Match: A0A061ECA4_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_008926 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.500e-44
Identity = 103/218 (47.25%), Postives = 131/218 (60.09%), Query Frame = 1 

		  

Query: 40  EETPVIRPFGLTSFPSDFYPATR------FVILSNNTGHGDGMNPRFPQSSQRIIPRYTS 99
           EE    RPF L+ FP    P TR       V L N       +NPRF    QR   +   
Sbjct: 63  EERVTTRPFSLSGFPD--LPRTRTRTPVQIVWLDNVPARA--VNPRFSGPLQRFTVQQVQ 122

Query: 100 NESTHVPTETDDDSKLTKEEQVIVLKKLKKEIYNPMPKILARRVSLYYRDVNRDITSKSM 159
             ++  P +  +DS+  ++EQ  VL KLKKEIYNP+PK + RR+S+YYRD NR       
Sbjct: 123 LPAS--PAQ-QEDSRSARDEQSNVLSKLKKEIYNPIPKQMTRRLSMYYRDQNRSNLYNEK 182

Query: 160 EKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRATFYERRE 219
           E+ KDEDGK CA+CLEDFE RE+VM+TPC HMFHEEC+VPWVK+HG CPVCR    E R 
Sbjct: 183 EREKDEDGKRCAICLEDFEPREQVMLTPCDHMFHEECIVPWVKSHGQCPVCRFVLSE-RI 242

Query: 220 RLIRGQPFNDNNRGVRVPALFSDELLSLFQSLDEAFPW 252
           R       N+N   V    LF+ EL+S+ ++++EAF W
Sbjct: 243 RQNASSISNNNASNVAATDLFAGELISIIRAMEEAFLW 272
[Close]
BLAST of Spo10978.1 vs. ExPASy Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.300e-11
Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 1 

		  

Query: 164 CAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRATF------YERRERLIR 223
           CAVC++DFE   E    PC H++H++C++PW++ H  CPVCR         YERR R  +
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQ 283

Query: 224 GQPFNDNNRGVRVPALFSDELLSLFQSLDEAFPWRF 254
           G   +  N G         +  ++ +S   + PW F
Sbjct: 284 GT--SGGNDGDNSGQRSDGDNRTVERSFRISLPWPF 317
[Close]
BLAST of Spo10978.1 vs. ExPASy Swiss-Prot
Match: RN149_MOUSE (E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-10
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1 

		  

Query: 149 TSKSMEKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           T K  EK  D D ++CAVC+E+F+ ++ + + PC H+FH  C+ PW+ +H  CP+C+
Sbjct: 250 TVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCK 306
[Close]
BLAST of Spo10978.1 vs. ExPASy Swiss-Prot
Match: RN149_HUMAN (E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 2.600e-10
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1 

		  

Query: 149 TSKSMEKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           T K  EK  D D ++CAVC+E+F+ ++ + + PC H+FH  C+ PW+ +H  CP+C+
Sbjct: 254 TVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCK 310
[Close]
BLAST of Spo10978.1 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.700e-10
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 

		  

Query: 161 GKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           G  C VC ED+   EEV   PC+H FH  C+VPW++ H  CPVCR
Sbjct: 225 GLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCR 269
[Close]
BLAST of Spo10978.1 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.700e-10
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 

		  

Query: 161 GKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           G  C VC ED+   E V   PC+H+FH+ C+VPW++ H  CPVCR
Sbjct: 228 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272
[Close]
BLAST of Spo10978.1 vs. TAIR (Arabidopsis)
Match: AT3G58720.2 (RING/U-box superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.300e-28
Identity = 68/161 (42.24%), Postives = 99/161 (61.49%), Query Frame = 1 

		  

Query: 94  NESTHVPTETDDDSKLTKEEQVIVLKKLKKEIYNPMPK-ILARRVSLYYRDVN--RDITS 153
           N+ST   + +   S+  +E+++  LK L KE YNP+PK  L R +SLYYR+ N   + + 
Sbjct: 101 NQSTRPESSSRSSSQTNEEDEI--LKHLTKETYNPVPKSTLLRSLSLYYRNKNPGSESSR 160

Query: 154 KSMEKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCRATFYE 213
            +     +ED K C+VCLEDFE +E VM+TPC HMFHEEC+VPW+K  G CPVCR    +
Sbjct: 161 NTQNLSGEEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVILK 220

Query: 214 RRERLIRGQPFNDNN--RGVRVPALFSDELLSLFQSLDEAF 250
             ++     P N +N    +    LF+ ELLS+ ++++E F
Sbjct: 221 PTKQ-DSSPPANGSNLTGDMTTNDLFTLELLSVVRAMEETF 258
[Close]
BLAST of Spo10978.1 vs. TAIR (Arabidopsis)
Match: AT1G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.100e-11
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 1 

		  

Query: 67  SNNTGHGDGMNPRFPQSSQRIIPRYTSNESTHVPTETDDDSKLTKEEQVIVLKKLKKEIY 126
           S +TG+G G NP       R+I   TSN++  V    D DS        +    L     
Sbjct: 136 SESTGNG-GNNPG------RVILINTSNQTITVQNSADMDS--------VPAGSLGDYFI 195

Query: 127 NPMPKILARRVSLYYRDVNRDITSKSMEKH-------KDEDGKSCAVCLEDFEAREEVMV 186
            P  ++L +R++    D NR  T  + ++        K E+   C+VCL+DFE   E  +
Sbjct: 196 GPGFEMLLQRLA--ENDPNRYGTPPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKL 255

Query: 187 TPCSHMFHEECVVPWVKNHGDCPVCR 206
            PC+H FH +C++PW++ H  CPVCR
Sbjct: 256 MPCTHKFHSDCLLPWLELHSSCPVCR 264
[Close]
BLAST of Spo10978.1 vs. TAIR (Arabidopsis)
Match: AT3G56580.2 (RING/U-box superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-11
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 1 

		  

Query: 149 TSKSMEKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           T K  +KH       C VC ++FE + E    PC H++H +C+VPW+  H  CPVCR
Sbjct: 171 TIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 227
[Close]
BLAST of Spo10978.1 vs. TAIR (Arabidopsis)
Match: AT2G40830.2 (RING-H2 finger C1A)

HSP 1 Score: 65.9 bits (159), Expect = 4.200e-11
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 1 

		  

Query: 149 TSKSMEKHKDEDGKSCAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           T K  ++H      +C VC ++FE   E    PC+H++H +C+VPW+  H  CPVCR
Sbjct: 175 TIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCR 231
[Close]
BLAST of Spo10978.1 vs. TAIR (Arabidopsis)
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 9.400e-11
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1 

		  

Query: 164 CAVCLEDFEAREEVMVTPCSHMFHEECVVPWVKNHGDCPVCR 206
           CAVC+++FE   +V   PC H+FH++C++PW++ H  CPVCR
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257
The following BLAST results are available for this feature:
BLAST of Spo10978.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902214030|gb|KNA17403.1|6.9e-149100.hypothetical protein SOVF_0801... [more]
gi|902214031|gb|KNA17404.1|1.8e-13694.0hypothetical protein SOVF_0801... [more]
gi|731356537|ref|XP_010689727.1|2.4e-8865.5PREDICTED: RING finger protein... [more]
gi|870843933|gb|KMS97012.1|3.1e-4864.1hypothetical protein BVRB_7g17... [more]
gi|590692552|ref|XP_007044087.1|3.6e-4447.2RING/U-box superfamily protein... [more]
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BLAST of Spo10978.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RD89_SPIOL4.8e-149100.Uncharacterized protein OS=Spi... [more]
A0A0K9REK9_SPIOL1.2e-13694.0Uncharacterized protein OS=Spi... [more]
A0A0J8BLH7_BETVU1.6e-8865.5Uncharacterized protein OS=Bet... [more]
A0A0J8BAQ5_BETVU2.2e-4864.1Uncharacterized protein OS=Bet... [more]
A0A061ECA4_THECC2.5e-4447.2RING/U-box superfamily protein... [more]
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BLAST of Spo10978.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RING1_GOSHI2.3e-1134.3E3 ubiquitin-protein ligase RI... [more]
RN149_MOUSE2.0e-1042.1E3 ubiquitin-protein ligase RN... [more]
RN149_HUMAN2.6e-1042.1E3 ubiquitin-protein ligase RN... [more]
RN115_HUMAN5.7e-1053.3E3 ubiquitin-protein ligase RN... [more]
RN126_MOUSE5.7e-1051.1E3 ubiquitin-protein ligase RN... [more]
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BLAST of Spo10978.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G58720.21.3e-2842.2RING/U-box superfamily protein[more]
AT1G55530.11.1e-1132.8RING/U-box superfamily protein[more]
AT3G56580.21.4e-1142.1RING/U-box superfamily protein[more]
AT2G40830.24.2e-1140.3RING-H2 finger C1A[more]
AT3G19950.19.4e-1150.0RING/U-box superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 163..205
score: 1.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 164..204
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 164..205
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 159..208
score: 2.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 87..128
score: 6.1E-20coord: 153..230
score: 6.1
NoneNo IPR availablePANTHERPTHR14155:SF138GH10160Pcoord: 87..128
score: 6.1E-20coord: 153..230
score: 6.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 141..211
score: 1.16

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044238 primary metabolic process
biological_process GO:0023052 signaling
biological_process GO:0048316 seed development
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0065008 regulation of biological quality
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0006259 DNA metabolic process
biological_process GO:0051607 defense response to virus
biological_process GO:0006464 cellular protein modification process
biological_process GO:0007154 cell communication
biological_process GO:0030036 actin cytoskeleton organization
cellular_component GO:0016020 membrane
cellular_component GO:0044464 cell part
cellular_component GO:0000785 chromatin
cellular_component GO:0005856 cytoskeleton
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0043531 ADP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0004386 helicase activity
RNA-Seq Expression