Spo11061 (gene) | SpinachBase

Overview


Name	Spo11061
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214)
Location	SpoScf_09718 : 267 .. 634 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAATGCCGTCACCTATTTTTACTAACAAACTGAAACAAATGCTAGAAACGAACGAAATTGAGGAAGAAACAAATTTAGAAATAGAAAAAACTTCCGAAACGAAGGAGACTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGNTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAAAGATCCGAGTGAATGGAAAGGACAAAACAAAGGATGAATTCCACTTAAAAGAAGCATGCTATAAAAATAGCCCAACTTCTTATTCTGGGAATCAAGATATTTCG

mRNA sequence

GCAGAATGCCGTCACCTATTTTTACTAACAAACTGAAACAAATGCTAGAAACGAACGAAATTGAGGAAGAAACAAATTTAGAAATAGAAAAAACTTCCGAAACGAAGGAGACTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGNTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAAAGATCCGAGTGAATGGAAAGGACAAAACAAAGGATGAATTCCACTTAAAAGAAGCATGCTATAAAAATAGCCCAACTTCTTATTCTGGGAATCAAGATATTTCG

Coding sequence (CDS)

ATGCCGTCACCTATTTTTACTAACAAACTGAAACAAATGCTAGAAACGAACGAAATTGAGGAAGAAACAAATTTAGAAATAGAAAAAACTTCCGAAACGAAGGAGACTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGNTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAAAGATCCGAGTGAATGGAAAGGACAAAACAAAGGATGAATTCCACTTAAAAGAAGCATGCTATAAAAATAGCCCAACTTCTTATTCTGGGAATCAAGATATTTCG

Protein sequence

MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEEGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDIS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11061.1	Spo11061.1	mRNA

Homology

[Close]

BLAST of Spo11061.1 vs. NCBI nr
Match: gi|11497576|ref|NP_054983.1| (hypothetical protein SpolCp079 [Spinacia oleracea])

HSP 1 Score: 179.9 bits (455), Expect = 2.700e-42
Identity = 102/121 (84.30%), Postives = 102/121 (84.30%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKET                   KQEEE
Sbjct: 234 MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKET-------------------KQEEE 293

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI
Sbjct: 294 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI 335

Query: 121 S 122
           S
Sbjct: 354 S 335

[Close]

BLAST of Spo11061.1 vs. NCBI nr
Match: gi|11497589|ref|NP_054996.1| (ycf1 protein [Spinacia oleracea])

HSP 1 Score: 179.9 bits (455), Expect = 2.700e-42
Identity = 102/121 (84.30%), Postives = 102/121 (84.30%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKET                   KQEEE
Sbjct: 234 MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKET-------------------KQEEE 293

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI
Sbjct: 294 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI 335

Query: 121 S 122
           S
Sbjct: 354 S 335

[Close]

BLAST of Spo11061.1 vs. NCBI nr
Match: gi|982898210|ref|YP_009221856.1| (hypothetical chloroplast RF19 (chloroplast) [Mesembryanthemum crystallinum])

HSP 1 Score: 159.1 bits (401), Expect = 5.000e-36
Identity = 94/123 (76.42%), Postives = 97/123 (78.86%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDVEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE--FHLKEACYKNSPTSYSGNQ 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE  FHLKEACYKNSPTSYSGNQ
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHLKEACYKNSPTSYSGNQ 343

Query: 121 DIS 122
           DIS
Sbjct: 360 DIS 343

[Close]

BLAST of Spo11061.1 vs. NCBI nr
Match: gi|982898222|ref|YP_009221868.1| (hypothetical chloroplast RF19 (chloroplast) [Mesembryanthemum crystallinum])

HSP 1 Score: 159.1 bits (401), Expect = 5.000e-36
Identity = 94/123 (76.42%), Postives = 97/123 (78.86%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDVEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE--FHLKEACYKNSPTSYSGNQ 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE  FHLKEACYKNSPTSYSGNQ
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHLKEACYKNSPTSYSGNQ 343

Query: 121 DIS 122
           DIS
Sbjct: 360 DIS 343

[Close]

BLAST of Spo11061.1 vs. NCBI nr
Match: gi|377581142|gb|AFB70709.1| (Ycf1 protein, partial (chloroplast) [Mollugo verticillata])

HSP 1 Score: 157.1 bits (396), Expect = 1.900e-35
Identity = 93/125 (74.40%), Postives = 96/125 (76.80%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDIEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHL----KEACYKNSPTSYSG 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFH     KEACYKNSPTSYSG
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHXXXKEACYKNSPTSYSG 345

Query: 121 NQDIS 122
           NQDIS
Sbjct: 360 NQDIS 345

[Close]

BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
Match: A0A0G2R7Z6_MESCR (Hypothetical chloroplast RF19 OS=Mesembryanthemum crystallinum GN=ycf1 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.500e-36
Identity = 94/123 (76.42%), Postives = 97/123 (78.86%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDVEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE--FHLKEACYKNSPTSYSGNQ 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE  FHLKEACYKNSPTSYSGNQ
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHLKEACYKNSPTSYSGNQ 343

Query: 121 DIS 122
           DIS
Sbjct: 360 DIS 343

[Close]

BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
Match: A0A0G2R820_MESCR (Hypothetical chloroplast RF19 OS=Mesembryanthemum crystallinum GN=ycf1 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.500e-36
Identity = 94/123 (76.42%), Postives = 97/123 (78.86%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDVEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE--FHLKEACYKNSPTSYSGNQ 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE  FHLKEACYKNSPTSYSGNQ
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHLKEACYKNSPTSYSGNQ 343

Query: 121 DIS 122
           DIS
Sbjct: 360 DIS 343

[Close]

BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
Match: H6T9N5_MOLVE (Ycf1 protein (Fragment) OS=Mollugo verticillata GN=ycf1 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.300e-35
Identity = 93/125 (74.40%), Postives = 96/125 (76.80%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDIEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHL----KEACYKNSPTSYSG 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFH     KEACYKNSPTSYSG
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHXXXKEACYKNSPTSYSG 345

Query: 121 NQDIS 122
           NQDIS
Sbjct: 360 NQDIS 345

[Close]

BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
Match: H6T9N3_9CARY (Ycf1 protein (Fragment) OS=Didierea madagascariensis GN=ycf1 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.700e-35
Identity = 93/125 (74.40%), Postives = 96/125 (76.80%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E EEET++EIEKTSETKET                   KQEEE
Sbjct: 240 MPSPIFTKKLKETSETKESEEETDVEIEKTSETKET-------------------KQEEE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHL----KEACYKNSPTSYSG 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFH     KEACYKNSPTSYSG
Sbjct: 300 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHLKEKEACYKNSPTSYSG 345

Query: 121 NQDIS 122
           NQDIS
Sbjct: 360 NQDIS 345

[Close]

BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
Match: A0A0U1Z6P3_9CARY (Ycf1 OS=Dianthus longicalyx GN=ycf1 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.700e-35
Identity = 92/123 (74.80%), Postives = 97/123 (78.86%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFT KLK+  ET E E+ET++EIEKTSETKET                   KQEEE
Sbjct: 237 MPSPIFTKKLKETSETKESEDETDVEIEKTSETKET-------------------KQEEE 296

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEF--HLKEACYKNSPTSYSGNQ 120
           GFT+EDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEF  HLKEACYKNSPTSYSGNQ
Sbjct: 297 GFTDEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLHLKEACYKNSPTSYSGNQ 340

Query: 121 DIS 122
           DIS
Sbjct: 357 DIS 340

[Close]

BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
Match: TI214_SPIOL (Protein TIC 214 OS=Spinacia oleracea GN=TIC214 PE=3 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 1.700e-44
Identity = 102/121 (84.30%), Postives = 102/121 (84.30%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKET                   KQEEE
Sbjct: 234 MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKET-------------------KQEEE 293

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI 120
           GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI
Sbjct: 294 GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSGNQDI 335

Query: 121 S 122
           S
Sbjct: 354 S 335

[Close]

BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
Match: TI214_VITVI (Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.400e-27
Identity = 79/128 (61.72%), Postives = 89/128 (69.53%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNE---IEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQ 60
           +PSPI T K+K+  ET E    EEET++EIE+TSETK T                   KQ
Sbjct: 240 IPSPILTKKMKETSETEERGESEEETDVEIERTSETKGT-------------------KQ 299

Query: 61  EEEGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSP---TSY 120
           E+E  TEEDPSPSLFSEEKEDPDKIDETE+IRVNGK+KTKDEFH KE CYKNSP   TSY
Sbjct: 300 EQERSTEEDPSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKETCYKNSPVYETSY 348

Query: 121 -SGNQDIS 122
             GNQ+ S
Sbjct: 360 LDGNQENS 348

[Close]

BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
Match: TI214_POPTR (Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.700e-25
Identity = 77/127 (60.63%), Postives = 86/127 (67.72%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           +PSPIFT KLK+  ET E EEET++EIE T ETK T                   KQE+E
Sbjct: 240 IPSPIFTKKLKETSETEEREEETDVEIETTPETKGT-------------------KQEQE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE--FHLKEACYKNSP---TSY- 120
           G TEEDPS SLFSEEKE+PDKIDETE+IRVNGK+KTKDE  FH KE CYKN P   T Y 
Sbjct: 300 GSTEEDPSSSLFSEEKENPDKIDETEEIRVNGKEKTKDEFHFHFKETCYKNRPVYETFYL 347

Query: 121 SGNQDIS 122
            GNQ+ S
Sbjct: 360 DGNQENS 347

[Close]

BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
Match: TI214_POPAL (Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.700e-25
Identity = 77/127 (60.63%), Postives = 86/127 (67.72%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEEE 60
           +PSPIFT KLK+  ET E EEET++EIE T ETK T                   KQE+E
Sbjct: 240 IPSPIFTKKLKETSETEEREEETDVEIETTPETKGT-------------------KQEQE 299

Query: 61  GFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDE--FHLKEACYKNSP---TSY- 120
           G TEEDPS SLFSEEKE+PDKIDETE+IRVNGK+KTKDE  FH KE CYKN P   T Y 
Sbjct: 300 GSTEEDPSSSLFSEEKENPDKIDETEEIRVNGKEKTKDEFHFHFKETCYKNRPVYETFYL 347

Query: 121 SGNQDIS 122
            GNQ+ S
Sbjct: 360 DGNQENS 347

[Close]

BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
Match: TI214_DAUCA (Protein TIC 214 OS=Daucus carota GN=TIC214 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.200e-23
Identity = 71/117 (60.68%), Postives = 77/117 (65.81%), Query Frame = 1


		  
Query: 1   MPSPIFTNKLKQMLETN-EIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSXKQEE 60
           +PSPIFT KL    E   E EEET++EIE  SETK T                   KQE+
Sbjct: 237 IPSPIFTKKLNPQTEEGWESEEETDVEIETASETKGT-------------------KQEQ 296

Query: 61  EGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKNSPTSYSG 117
           EG TEEDPSPSLFSEEKEDPDKIDETE+IRVNGK+KTKDEFH  E  Y NSP  Y G
Sbjct: 297 EGSTEEDPSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFTEIRYNNSPV-YKG 333

[Close]

BLAST of Spo11061.1 vs. TAIR (Arabidopsis)
Match: ATCG01130.1 (Ycf1 protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-8
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 1


		  
Query: 56  KQEEEGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTK--DEFHLKEAC-YKNSPT 115
           KQ++E  TEE P PSLFSEE ED DKIDE E+IRVNGKDK    DEFH++    YK    
Sbjct: 262 KQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRTYYNYKTVSE 321

Query: 116 SYSGNQDIS 122
           +  GN++ S
Sbjct: 322 NLYGNKENS 330

[Close]

BLAST of Spo11061.1 vs. TAIR (Arabidopsis)
Match: ATCG01000.1 (Ycf1 protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-8
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 1


		  
Query: 56  KQEEEGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTK--DEFHLKEAC-YKNSPT 115
           KQ++E  TEE P PSLFSEE ED DKIDE E+IRVNGKDK    DEFH++    YK    
Sbjct: 262 KQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRTYYNYKTVSE 321

Query: 116 SYSGNQDIS 122
           +  GN++ S
Sbjct: 322 NLYGNKENS 330

The following BLAST results are available for this feature:

BLAST of Spo11061.1 vs. NCBI nr
BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
BLAST of Spo11061.1 vs. TAIR (Arabidopsis)

BLAST of Spo11061.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|11497576\|ref\|NP_054983.1\|	2.7e-42	84.3	hypothetical protein SpolCp079...	[more]
gi\|11497589\|ref\|NP_054996.1\|	2.7e-42	84.3	ycf1 protein [Spinacia olerace...	[more]
gi\|982898210\|ref\|YP_009221856.1\|	5.0e-36	76.4	hypothetical chloroplast RF19 ...	[more]
gi\|982898222\|ref\|YP_009221868.1\|	5.0e-36	76.4	hypothetical chloroplast RF19 ...	[more]
gi\|377581142\|gb\|AFB70709.1\|	1.9e-35	74.4	Ycf1 protein, partial (chlorop...	[more]

BLAST of Spo11061.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0G2R7Z6_MESCR	3.5e-36	76.4	Hypothetical chloroplast RF19 ...	[more]
A0A0G2R820_MESCR	3.5e-36	76.4	Hypothetical chloroplast RF19 ...	[more]
H6T9N5_MOLVE	1.3e-35	74.4	Ycf1 protein (Fragment) OS=Mol...	[more]
H6T9N3_9CARY	1.7e-35	74.4	Ycf1 protein (Fragment) OS=Did...	[more]
A0A0U1Z6P3_9CARY	1.7e-35	74.8	Ycf1 OS=Dianthus longicalyx GN...	[more]

BLAST of Spo11061.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
TI214_SPIOL	1.7e-44	84.3	Protein TIC 214 OS=Spinacia ol...	[more]
TI214_VITVI	9.4e-27	61.7	Protein TIC 214 OS=Vitis vinif...	[more]
TI214_POPTR	6.7e-25	60.6	Protein TIC 214 OS=Populus tri...	[more]
TI214_POPAL	6.7e-25	60.6	Protein TIC 214 OS=Populus alb...	[more]
TI214_DAUCA	8.2e-23	60.6	Protein TIC 214 OS=Daucus caro...	[more]

BLAST of Spo11061.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
ATCG01130.1	1.2e-8	56.5	Ycf1 protein	[more]
ATCG01000.1	1.2e-8	56.5	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 55..114 score: 2.5E-20coord: 1..59 score: 9.9
None	No IPR available	unknown	Coil	Coil	coord: 20..40 scor
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 67..120 score: 5.9E-30coord: 1..49 score: 5.9
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 67..120 score: 5.9E-30coord: 1..49 score: 5.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18080	0.70	Barchart \| Table
Spo14936	0.65	Barchart \| Table
Spo22451	0.65	Barchart \| Table