Spo11125 (gene)

Overview
NameSpo11125
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionOrf108a
LocationSpoScf_02438 : 10435 .. 11054 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTTCCGATTGATGAACAGATTTTTTGACTTGCCTCCGGCTATGTGTCCAAAGGCCACCCCTCGCCCGCCCGCCACCAACTGGCACGCTAGCCTCCCATCGACTAGGGCCAAGACAAGTAGAGGAGCGAGGTACGAGCTTCTTATTCTTTCTTTTCTTATTAAGGGTTGTAATAGCTAAAGCTATGCTTTTGGAAAGGGAGAGGACAAGACCTAATCTTTCTTCTAGCGCGGCTCGCTTCGCTTTTGTTGCGGAGCTTGCTGCTTTTCATTTTGTTAGGAGTAGGTGCTTGCCCTTAGTTGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA

mRNA sequence

ATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGATTTTTTGACTTGCCTCCGGCTATGTGTCCAAAGGCCACCCCTCGCCCGCCCGCCACCAACTGGCACGCTAGCCTCCCATCGACTAGGGCCAAGACAAGTAGAGGAGCGAGGGTTGTAATAGCTAAAGCTATGCTTTTGGAAAGGGAGAGGACAAGACCTAATCTTTCTTCTAGCGCGGCTCGCTTCGCTTTTGTTGCGGAGCTTGCTGCTTTTCATTTTGTGCTTGCCCTTAGTTGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA

Coding sequence (CDS)

ATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGATTTTTTGACTTGCCTCCGGCTATGTGTCCAAAGGCCACCCCTCGCCCGCCCGCCACCAACTGGCACGCTAGCCTCCCATCGACTAGGGCCAAGACAAGTAGAGGAGCGAGGGTTGTAATAGCTAAAGCTATGCTTTTGGAAAGGGAGAGGACAAGACCTAATCTTTCTTCTAGCGCGGCTCGCTTCGCTTTTGTTGCGGAGCTTGCTGCTTTTCATTTTGTGCTTGCCCTTAGTTGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA

Protein sequence

MSPEQSQYIWRKTIPHIEVGMGSGVFTSHRSARFFDLPPAMCPKATPRPPATNWHASLPSTRAKTSRGARVVIAKAMLLERERTRPNLSSSAARFAFVAELAAFHFVLALSWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPMLRAKPIPRV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11125.1Spo11125.1mRNA


Homology
[Close]
BLAST of Spo11125.1 vs. NCBI nr
Match: gi|586829792|gb|AHJ81032.1| (orf108a (mitochondrion) [Panax ginseng])

HSP 1 Score: 152.5 bits (384), Expect = 6.900e-34
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 

		  

Query: 110 LSWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII 169
           L WLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII
Sbjct: 26  LCWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII 85

Query: 170 GPMLRAKPIPRV 182
           GPMLRAKPIPRV
Sbjct: 86  GPMLRAKPIPRV 97
[Close]
BLAST of Spo11125.1 vs. NCBI nr
Match: gi|1021021283|gb|KZM80272.1| (hypothetical protein DCAR_032051 [Daucus carota subsp. sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.900e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 113 LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 172
           LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM
Sbjct: 27  LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 86

Query: 173 LRAKPIPRV 182
           LRAKPIPRV
Sbjct: 87  LRAKPIPRV 95
[Close]
BLAST of Spo11125.1 vs. NCBI nr
Match: gi|675895331|ref|YP_009049805.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 136.3 bits (342), Expect = 5.100e-29
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1 

		  

Query: 113 LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 172
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTK LCGTS  QKSWVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 173 LRAKPIPRV 182
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo11125.1 vs. NCBI nr
Match: gi|57013913|ref|YP_173386.1| (hypothetical protein NitaMp040 [Nicotiana tabacum])

HSP 1 Score: 136.3 bits (342), Expect = 5.100e-29
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1 

		  

Query: 113 LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 172
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTK LCGTS  QKSWVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 173 LRAKPIPRV 182
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo11125.1 vs. NCBI nr
Match: gi|565487741|ref|XP_006301510.1| (hypothetical protein CARUB_v10021936mg, partial [Capsella rubella])

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 1 

		  

Query: 119 SIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTS 161
           SI KDSIQPQVPL LPCY+FT VEDP VVCANKT KSLCGTS
Sbjct: 31  SITKDSIQPQVPLWLPCYEFTRVEDPIVVCANKTIKSLCGTS 72
[Close]
BLAST of Spo11125.1 vs. UniProtKB/TrEMBL
Match: A0A096XFC7_PANGI (Orf108a OS=Panax ginseng GN=orf108a PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.800e-34
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 

		  

Query: 110 LSWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII 169
           L WLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII
Sbjct: 26  LCWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII 85

Query: 170 GPMLRAKPIPRV 182
           GPMLRAKPIPRV
Sbjct: 86  GPMLRAKPIPRV 97
[Close]
BLAST of Spo11125.1 vs. UniProtKB/TrEMBL
Match: A0A075VTL5_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf108e PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.600e-29
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1 

		  

Query: 113 LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 172
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTK LCGTS  QKSWVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 173 LRAKPIPRV 182
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo11125.1 vs. UniProtKB/TrEMBL
Match: Q5MA28_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf108 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.600e-29
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1 

		  

Query: 113 LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 172
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTK LCGTS  QKSWVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 173 LRAKPIPRV 182
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo11125.1 vs. UniProtKB/TrEMBL
Match: R0ICM9_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10021936mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.000e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 1 

		  

Query: 119 SIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTS 161
           SI KDSIQPQVPL LPCY+FT VEDP VVCANKT KSLCGTS
Sbjct: 31  SITKDSIQPQVPLWLPCYEFTRVEDPIVVCANKTIKSLCGTS 72
[Close]
BLAST of Spo11125.1 vs. UniProtKB/TrEMBL
Match: B9TAA0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2074280 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.800e-11
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

		  

Query: 1  MSPEQSQYIWRKTIPHIEVGMGSGVFTSHRSARFFDLP 39
          MSPEQSQYIWRKTIPHIEVGMGSGVFTS+RSARF  +P
Sbjct: 46 MSPEQSQYIWRKTIPHIEVGMGSGVFTSYRSARFVLIP 83
The following BLAST results are available for this feature:
BLAST of Spo11125.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|586829792|gb|AHJ81032.1|6.9e-3498.6orf108a (mitochondrion) [Panax... [more]
gi|1021021283|gb|KZM80272.1|2.9e-32100.hypothetical protein DCAR_0320... [more]
gi|675895331|ref|YP_009049805.1|5.1e-2994.2hypothetical protein (mitochon... [more]
gi|57013913|ref|YP_173386.1|5.1e-2994.2hypothetical protein NitaMp040... [more]
gi|565487741|ref|XP_006301510.1|2.8e-1185.7hypothetical protein CARUB_v10... [more]
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BLAST of Spo11125.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A096XFC7_PANGI4.8e-3498.6Orf108a OS=Panax ginseng GN=or... [more]
A0A075VTL5_CAPAN3.6e-2994.2Uncharacterized protein OS=Cap... [more]
Q5MA28_TOBAC3.6e-2994.2Uncharacterized protein OS=Nic... [more]
R0ICM9_9BRAS2.0e-1185.7Uncharacterized protein (Fragm... [more]
B9TAA0_RICCO5.8e-1189.4Putative uncharacterized prote... [more]
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BLAST of Spo11125.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11125.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005739 mitochondrion
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005730 nucleolus
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
RNA-Seq Expression