Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATTGTTGACTTTCTCTCCCCTCCGTAAATAACATTTTTTTAAAAAAGCTCCTCCACAAATTCATCAGTCATTTCAGATTTTCAGTGATTTCACTACTATTTATACATCCTACAAAAATCTCAATCAATTTCCAAGCCAATTAAAAAAAAGAAAACGGAATACCAGATCTGATCAACCAATCAATCAACCCCAAGAAACGATGTCGTACTACCCAAGAGGCCGCGGCGGAGACAACGACGGCGATGACTTTGAAGAGTATGATCCAACCCCCTACGGCGGAGGATACGACCAATCACTCACCTACGGTCGCCCTATCTCTCCTTGCGAGGAGACTTGCTACCCTCCTTCCTCCTCCGGAGGTGGTGGTGGGATTGACTACGATCGTCCTCAATACACCTCCTACGCCGAACCTTCTGCTTACGGTGAGGAGGCTCAGGAGAATGAGTACAAGAGCTACGGCCGCCCAAGTTCTCGTACGCCCATCACTTACGGCGGAACACCCCAACCCGCTCCTGCGTACGGGAGTGGGTCTGGGTTTCAGCCCAAACTTCCCCAACCTTATGGAGGTGGGGGAGTAGGCGGTGGATCGGAATATGAATCTGGGTATGGCGGGAAACCCCAGTATGAAGCTCCTTCATCGGAGTATGGTTCTGGGTATGGGAGGAAGCCTGAGTATGAAGCTCCGGCACCGGAGTATGGATCGGGATATGGAAGGAAAACTGAGTACGAAGCTCCGACACCGGAATATGAATCTGGGTACGGGAGGAAAACAGAGTACGAGGCTCCGACACCGGAATATGGATCTGGGTATGGGCGGAAACCCGAGTATGAAGCTCCGAAACCAGAATATGGATCTGGGTACGGGAGAAAGACCGAGTACGAAGCTCCGAAACCGGAATATGAATCCGGATACGGGAGGAAAAGTGAATATGAAGCTCCAACATCGGAGTATGAATCTGGGTATGGGAGGAAGACGGAATACGAAGCCCCAACACCGGAATATGGATCTGGGTACGGAAGGAAGACGGAATATGAAGCACCGGCACAGGAATACGGATCTGGGTACGGGAGGAAGACGGAATATGAAGCTCCGACTCCAGAATATGGGTCTGGTTATGGTGGAGGGAGGAGTGAGTACGAGAAGCCCAAATATGGAAGGGAGGAAGGAGAGGGATATGGTGGATCTTCTTATGGTAGGACTGAATATGGAAAAAAGAGTGATGATGAAGATGAAGGCTATGGCCGCAAGAAATATGTAAGAATCTAACTATTTAATTTGTTATGTCTGTGAATTTGGTTTTGCTCCTAATTTTCTGTTAGTATTGTGATTTTATTGACATAAATTATCTAGAAAATGAGCTAGAAAGTAGGAACAAGCCCCACATTTTAGACAATTGGTTAATAAATGATCTCGGTGACATATAATATGTGATCAAGGCTAGCAACACAGATGCAGAATGCAGAGTCAATTAGATTTTAGTGGAATAGCCATTGTTGAACGTAGACTGGTGGCGATGTGGAATCACTAGTAGAATTTAGAAGTCAATTACTCAGTAGTTGTTTAGCCTTGAATCTAGTAACTTAGCCATAGTTGAATTTGGTCTAGGAATAAGTTAAAGCACCTACTAGTGATTTAGCTATATATATATATATATTGAATACATATGTTTGTTTAACATAAGTTCCCTAAGGTATTGCTACTCTTGGGACGAGGATGATGATAACTGAGTGTCCAGAGCTCAGGCAAGTGAAATGGTGTGTCTAAAATTTTGGGATTAGGATATGATTACTGACTATTCTCGGAGAAACATCTGGATGATGAATCTGTCTCTGCTCCCTGGCTTACGCCTTTTCTCCCATTTCCAGTCTGGAATACACTCCCCCAACATTCTCAAGTACCATCTTGCCACGTTACTGCTTCAAAACCAATATATATGAGCTTTTAATTTCATATTTTGAATATTTGGTGATTTGGAAAACTGGGATGAAGAGACGATTGGAATAAGATGACAGCTAATAATATGATTTAGGATCTCGTTTCTGGCTCAATCCTTAGTACTTGGTGATCTGAATTCATTTTCCTAGTAACTGCGCTAGATAAATTGATCAGCAATGTGATATTTCCAGCTTCGCTTATTGTCCAATCATTGTCCGTTGCCTTATCTGAGGTGATTTTACAATTCAGCTGCATCTTTGCTTTTGTATTCTCTCAGTTTAATTGAGATAGTCTTTCTTTTTTCCTCGTCACATTCATTTGAAATTCGATGCGGCCCTCTGTGTGCATACAAACTTTGGGATTGTGCAAGGTTCCTTCTGGCGTGGCTTTGACTTGATTATTACTCCCTCCATCAGGAAATAGTAGTCATATCACTGATATGTATTGCAAGGGGTCTTTGATTAAAAGAGTTTAGAGCAATGTGACAACATTTCTGGACAGAAGAAGTTCTAGTACGGAGTACAAAATATNTTGAAAAAATATCTTTTAGTAAACCAGGCATTTAGTTGCTTGTGTATCTTTGGTTTCTGTTGATAGAAGTGGAGCATAGAACAAATCTCGCGTTCTGTTTATGGGAGTACTTCTTAGCTGGGCTGTAAGTAACTCTGCAAGAGTTTTCTGTTTTGATATCAGGAGGATAGCTGCAATCTAGAGTTTTGTGATGACACGGCAAAATTCTTGTGTTTGGACTTTGGATGA TATTGTTGACTTTCTCTCCCCTCCGTAAATAACATTTTTTTAAAAAAGCTCCTCCACAAATTCATCAGTCATTTCAGATTTTCAGTGATTTCACTACTATTTATACATCCTACAAAAATCTCAATCAATTTCCAAGCCAATTAAAAAAAAGAAAACGGAATACCAGATCTGATCAACCAATCAATCAACCCCAAGAAACGATGTCGTACTACCCAAGAGGCCGCGGCGGAGACAACGACGGCGATGACTTTGAAGAGTATGATCCAACCCCCTACGGCGGAGGATACGACCAATCACTCACCTACGGTCGCCCTATCTCTCCTTGCGAGGAGACTTGCTACCCTCCTTCCTCCTCCGGAGGTGGTGGTGGGATTGACTACGATCGTCCTCAATACACCTCCTACGCCGAACCTTCTGCTTACGGTGAGGAGGCTCAGGAGAATGAGTACAAGAGCTACGGCCGCCCAAGTTCTCGTACGCCCATCACTTACGGCGGAACACCCCAACCCGCTCCTGCGTACGGGAGTGGGTCTGGGTTTCAGCCCAAACTTCCCCAACCTTATGGAGGTGGGGGAGTAGGCGGTGGATCGGAATATGAATCTGGGTATGGCGGGAAACCCCAGTATGAAGCTCCTTCATCGGAGTATGGTTCTGGGTATGGGAGGAAGCCTGAGTATGAAGCTCCGGCACCGGAGTATGGATCGGGATATGGAAGGAAAACTGAGTACGAAGCTCCGACACCGGAATATGAATCTGGGTACGGGAGGAAAACAGAGTACGAGGCTCCGACACCGGAATATGGATCTGGGTATGGGCGGAAACCCGAGTATGAAGCTCCGAAACCAGAATATGGATCTGGGTACGGGAGAAAGACCGAGTACGAAGCTCCGAAACCGGAATATGAATCCGGATACGGGAGGAAAAGTGAATATGAAGCTCCAACATCGGAGTATGAATCTGGGTATGGGAGGAAGACGGAATACGAAGCCCCAACACCGGAATATGGATCTGGGTACGGAAGGAAGACGGAATATGAAGCACCGGCACAGGAATACGGATCTGGGTACGGGAGGAAGACGGAATATGAAGCTCCGACTCCAGAATATGGGTCTGGTTATGGTGGAGGGAGGAGTGAGTACGAGAAGCCCAAATATGGAAGGGAGGAAGGAGAGGGATATGGTGGATCTTCTTATGGTAGGACTGAATATGGAAAAAAGAGTGATGATGAAGATGAAGGCTATGGCCGCAAGAAATATGAGGATAGCTGCAATCTAGAGTTTTGTGATGACACGGCAAAATTCTTGTGTTTGGACTTTGGATGA ATGTCGTACTACCCAAGAGGCCGCGGCGGAGACAACGACGGCGATGACTTTGAAGAGTATGATCCAACCCCCTACGGCGGAGGATACGACCAATCACTCACCTACGGTCGCCCTATCTCTCCTTGCGAGGAGACTTGCTACCCTCCTTCCTCCTCCGGAGGTGGTGGTGGGATTGACTACGATCGTCCTCAATACACCTCCTACGCCGAACCTTCTGCTTACGGTGAGGAGGCTCAGGAGAATGAGTACAAGAGCTACGGCCGCCCAAGTTCTCGTACGCCCATCACTTACGGCGGAACACCCCAACCCGCTCCTGCGTACGGGAGTGGGTCTGGGTTTCAGCCCAAACTTCCCCAACCTTATGGAGGTGGGGGAGTAGGCGGTGGATCGGAATATGAATCTGGGTATGGCGGGAAACCCCAGTATGAAGCTCCTTCATCGGAGTATGGTTCTGGGTATGGGAGGAAGCCTGAGTATGAAGCTCCGGCACCGGAGTATGGATCGGGATATGGAAGGAAAACTGAGTACGAAGCTCCGACACCGGAATATGAATCTGGGTACGGGAGGAAAACAGAGTACGAGGCTCCGACACCGGAATATGGATCTGGGTATGGGCGGAAACCCGAGTATGAAGCTCCGAAACCAGAATATGGATCTGGGTACGGGAGAAAGACCGAGTACGAAGCTCCGAAACCGGAATATGAATCCGGATACGGGAGGAAAAGTGAATATGAAGCTCCAACATCGGAGTATGAATCTGGGTATGGGAGGAAGACGGAATACGAAGCCCCAACACCGGAATATGGATCTGGGTACGGAAGGAAGACGGAATATGAAGCACCGGCACAGGAATACGGATCTGGGTACGGGAGGAAGACGGAATATGAAGCTCCGACTCCAGAATATGGGTCTGGTTATGGTGGAGGGAGGAGTGAGTACGAGAAGCCCAAATATGGAAGGGAGGAAGGAGAGGGATATGGTGGATCTTCTTATGGTAGGACTGAATATGGAAAAAAGAGTGATGATGAAGATGAAGGCTATGGCCGCAAGAAATATGAGGATAGCTGCAATCTAGAGTTTTGTGATGACACGGCAAAATTCTTGTGTTTGGACTTTGGATGA MSYYPRGRGGDNDGDDFEEYDPTPYGGGYDQSLTYGRPISPCEETCYPPSSSGGGGGIDYDRPQYTSYAEPSAYGEEAQENEYKSYGRPSSRTPITYGGTPQPAPAYGSGSGFQPKLPQPYGGGGVGGGSEYESGYGGKPQYEAPSSEYGSGYGRKPEYEAPAPEYGSGYGRKTEYEAPTPEYESGYGRKTEYEAPTPEYGSGYGRKPEYEAPKPEYGSGYGRKTEYEAPKPEYESGYGRKSEYEAPTSEYESGYGRKTEYEAPTPEYGSGYGRKTEYEAPAQEYGSGYGRKTEYEAPTPEYGSGYGGGRSEYEKPKYGREEGEGYGGSSYGRTEYGKKSDDEDEGYGRKKYEDSCNLEFCDDTAKFLCLDFG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11152.1 vs. NCBI nr
Match: gi|902239514|gb|KNA25633.1| (hypothetical protein SOVF_004820 [Spinacia oleracea]) HSP 1 Score: 709.1 bits (1829), Expect = 4.000e-201 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1
BLAST of Spo11152.1 vs. NCBI nr
Match: gi|731324270|ref|XP_010672882.1| (PREDICTED: uncharacterized protein At5g39570 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 509.2 bits (1310), Expect = 6.000e-141 Identity = 262/358 (73.18%), Postives = 297/358 (82.96%), Query Frame = 1
BLAST of Spo11152.1 vs. NCBI nr
Match: gi|731324272|ref|XP_010672883.1| (PREDICTED: uncharacterized protein At5g39570 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 475.7 bits (1223), Expect = 7.400e-131 Identity = 247/357 (69.19%), Postives = 280/357 (78.43%), Query Frame = 1
BLAST of Spo11152.1 vs. NCBI nr
Match: gi|460372787|ref|XP_004232206.1| (PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]) HSP 1 Score: 363.6 bits (932), Expect = 4.100e-97 Identity = 220/366 (60.11%), Postives = 254/366 (69.40%), Query Frame = 1
BLAST of Spo11152.1 vs. NCBI nr
Match: gi|970010756|ref|XP_015066279.1| (PREDICTED: uncharacterized protein At5g39570-like [Solanum pennellii]) HSP 1 Score: 362.8 bits (930), Expect = 7.000e-97 Identity = 220/367 (59.95%), Postives = 254/367 (69.21%), Query Frame = 1
BLAST of Spo11152.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1Q4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004820 PE=4 SV=1) HSP 1 Score: 709.1 bits (1829), Expect = 2.800e-201 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1
BLAST of Spo11152.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FGS4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061780 PE=4 SV=1) HSP 1 Score: 509.2 bits (1310), Expect = 4.200e-141 Identity = 262/358 (73.18%), Postives = 297/358 (82.96%), Query Frame = 1
BLAST of Spo11152.1 vs. UniProtKB/TrEMBL
Match: K4BBY2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 2.800e-97 Identity = 220/366 (60.11%), Postives = 254/366 (69.40%), Query Frame = 1
BLAST of Spo11152.1 vs. UniProtKB/TrEMBL
Match: F6H5V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01160 PE=4 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 1.600e-95 Identity = 207/362 (57.18%), Postives = 236/362 (65.19%), Query Frame = 1
BLAST of Spo11152.1 vs. UniProtKB/TrEMBL
Match: M0ZM13_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001431 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 9.800e-90 Identity = 213/367 (58.04%), Postives = 244/367 (66.49%), Query Frame = 1
BLAST of Spo11152.1 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 3.900e-39 Identity = 144/357 (40.34%), Postives = 176/357 (49.30%), Query Frame = 1
BLAST of Spo11152.1 vs. TAIR (Arabidopsis)
Match: AT5G39570.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 163.7 bits (413), Expect = 2.200e-40 Identity = 144/357 (40.34%), Postives = 176/357 (49.30%), Query Frame = 1
BLAST of Spo11152.1 vs. TAIR (Arabidopsis)
Match: AT3G29075.1 (glycine-rich protein) HSP 1 Score: 94.4 bits (233), Expect = 1.600e-19 Identity = 81/224 (36.16%), Postives = 104/224 (46.43%), Query Frame = 1
BLAST of Spo11152.1 vs. TAIR (Arabidopsis)
Match: AT1G11440.1 (BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1)) HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9 Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11152.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11152.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11152.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo11152.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|