Spo11163 (gene)

Overview
NameSpo11163
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 26048947 .. 26051439 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATGGGAGATTCGAGTAAGTGAATTATCGACTATCGTACACAAGCTTCCACTCTTAACCAGTTAAAAATTATACCAAGACTTAATATTGGTATTTTGACTTAAATTATGAAGTTATAATATCACTTTTTTGTCCCTATTTAACAACGGGTATGGTTCTTTTTTTGTTGTATTTGTTGTTGTCGTCTTTTAATTATTAAAAATAGTAAGAAATAGGGTAATAGTTTTAGAATGATTGAAAATAAGAATAATTATTTAAGAATCGAGAAAATTTGCCTTCAATCAACTTCAACCAACTATAAATAAATTTGAATTGTACCTTCCATATATATAAAAATAGTAATTAATTGTGATACTAGAATTTCTTTTAATAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACTTTCTGTATTTTATACTAAAACATTTTAACAAAAAATTGTTATCTTAAGAATTGTAGGTTGCGACAACAATTTATATGTTGACGTATATAATGGATCTTTCCCTTAATCTTAATATTATTGTCATGTCACTTGAAAATGTGTACCTAAGTGCAAGTAAGAAATTCATTTAGTTATACCTAGCTACGCATTTTTTACGTGTAAGTTATTCAGATATAATCATATATATTGCAATAATTGATTCATATATTTTATAATCTTTGAACTTGTGAGTAAACCCGAACCTGAACCGATTGGATCATAAACTTACATTATTTGACCCAACCCCAAAGTAACATAAATTTGAAAGTAGTTTGACTAATTCGATCTGAACAGTTTAACAGCTATTTTGAAGGGTTAAAAGTACATACAATATGCTAGTGTACTAGGGGTATCTTTTCGGTGATCGATTTGGATCAAGCTTAATAAAACCAGGGTTTGAGATATTGAGTGCTTCGACCAATCCAATATGAATTAAAATTTGGTGATTTGGACCCGATCCGAAATCCAAATTAAGAATAACCTTCTTTATTCAATTATTTAAATAACACAATAAATAATTAATAATTAATTGGTCCAACATTGGACAAAAAAGACGAAATATCTTGAAAGTTAATAAACGATTTTGAGAATCTATACCTAGTATTTAAAAAGGAAAATCGTGGATGATTAGATGACACATGTCATCGATCCCCATTTTTCATCCTTAGATTTTATTTTTTGTTATACGAAACATTTTAATTTACAGTTTCAACACCTCTTGCCCTTCATCTTCTTCAATTCACCATTTAATTTATATATTCATATAACCTGTTTCACACCCTCTCCCACTTTAACACTCAATAATTCAACATCTAATTTATATATATTTTCTACTCAAATTTCACCTCTATATAAATCATAATTCCCACTAAAATCACAAGGCCTCAACAAAATTAGCACTTTAAAAGACGGTCTAAAAATCACTTACTCGTTATTTAAACGGGCACAAATAAAATAACACAATCCCAACAGTTCAGCAAATGTTTCAACATAAAAAAATGTAACTTTTATGTTACAAAAAAAAAGCCCGGTTATTTCATATTTATTTGGATCCGATTTGCAAACCCTTTTTTTAAAAAATAATACTACTCCGAGCTATAATTCAGTTTAGGTCATGTATGACAAAACTAGCGGTAGCGTCGTAGCGGGATCCAGTTAGTGATTGAGTAACGGGTAGTTGTTAGTGTAGCAGGTGGCGAGCACCGGCGAATAATAGCGAGTAACAGTTATTGTCAAAGTAGCGGGTTACTAGTATGAGTATTCGGTAAAAGTAGCGGTCGGTATTCTAAATACGATAAAAAGCTATGTATAAATGTATCAAACGCTATATTCTGTATTTAAACACTATAAATTTTAACGTTTGACAAAAGCTACACAATCACTATCTCTACCACGAGCTGCTAAATTGCCAAACACTTATAAATTTTACAAGTAGCCTGTTAACTAGATCAAAATACTACCATTATAATAAACGCTAACGCCGAAGACATCCTCTGTTTTGATTCAATTTTTTCCCGAGAAGGAACGGACACAATTACACCCCTTATTGCCGGCCACTTTTTTTATATACTGTATAATTTCGTTTAATTTTGACGGGCTGTTTTTCCGTCCACTTTAGCCTCAAAACTTTACTGCGCGCAGGAATTCAACCGGAAACATCCCATAAAACCCAAGACACAGACCTTTTTTTTAAAAATTATTTTTAATTTTTAATTTTAAAAATCAAACCGAAAACACATAGAAATCTATGCTATAAATATGAGTGAACTCTATTAAAAAACTGGTAAACAGAGAAGACAAGAAACAAGAGGATCACAAAACTTGCTATACTTTACCATACTTTTTTTTTTTGGGGTCTAAAATCTCAACTTGTGAATTTTGTGGTACCCTAAATAAAAATCCTAAAACCCACAATATTGTGGCACAGATTCGTCCTTAGTGTTATCTCTTCGTATTCGATATACCCCCATTAAAATCCACATATTTTTCCAACCCACCCTTCAGA

mRNA sequence

ATGAAAAATGGGAGATTCGAAGAAGACAAGAAACAAGAGGATCACAAAACTTGCTATACTTTACCATACTTTTTTTTTTTGGGGTCTAAAATCTCAACTTGTGAATTTTGTGGTACCCTAAATAAAAATCCTAAAACCCACAATATTGTGGCACAGATTCGTCCTTAA

Coding sequence (CDS)

ATGAAAAATGGGAGATTCGAAGAAGACAAGAAACAAGAGGATCACAAAACTTGCTATACTTTACCATACTTTTTTTTTTTGGGGTCTAAAATCTCAACTTGTGAATTTTGTGGTACCCTAAATAAAAATCCTAAAACCCACAATATTGTGGCACAGATTCGTCCTTAA

Protein sequence

MKNGRFEEDKKQEDHKTCYTLPYFFFLGSKISTCEFCGTLNKNPKTHNIVAQIRP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11163.1Spo11163.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo11163.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo11163.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo11163.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo11163.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0006449 regulation of translational termination
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003747 translation release factor activity
RNA-Seq Expression