Spo11191 (gene)

Overview
NameSpo11191
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase subunit
Locationchr1 : 26361314 .. 26368567 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACCCAAAGTTAATTATTGCTGTACCGCAAGACACTACCCGTGATAACGCGGGTAACCGGTTGAACGGGTCGGGTTATAGGCTGCGTTTTCAATTACCGCTTTTATACCCGGTAATAACCCCGCGCTTTCATTCCAACTTCACTGGCTTATTGGAAAAAAAAACTCAGCAGAGGCTTCTTTGCAGTTCGCACCGCCGAACCTCACGCATTCCACACCCTGCCACCACCCTGTTTGCCGGTCGTCATCCCGCTTCTCACCACCGCCACCAACCTTCTCTCCTCTTCCGTAATAATCGAGGCCGCTGTCCTCTCTATCTCGCCGGCCATATCTTCTCGCCGGCCATATCTTCTGTTTCTCCTCTTTTCTCAAGGTTGGTTCATAACGTTTTTCGATTCTCCTGTTTTGTTTGGTCTTTATATTTAATTTCCGTTTAATGAGTGGAGCATAATGAGTTGAGGGCTAATCTCCCAAGTATTGGATGAAAGTTACAAATTAGGGTTCTGATATTTGTGGTTTTTGAGTAATCCCTTAATTTATGGGTTTTGTATGTTAACTCAAACTTCAATCTATTTGATTCTGAAATATAAATTGTTTGTTTTGGTGGTATTGTTGTACAGGAGTTAGTATGGATTTTTCTAGAAGGCGTGATTTTTTGTTCTGTGGCTCATGTGGGACGATGTTGTCTTTGCCATCAACTAAGTATGCTCGATGCCCTTTGTGCCGCACTAAGAAAAATGTCAAAGGTATTACTTTCTGCCTTCTTTCTAGTTATCTTCTGACCTTTATTGTTTCTTTGATGCTGTATTTAACTATAAGCAAAGGAAATATATTTAGCTTGGATTGAGTTGAGTCGAGTCGAGGCAAGGAACAAGATTAGATTGAAGGGTATGTACTGATGATAGAACCCCTTATGTTGGATTTGAAGGAGATTGTTTGATTAATTCAATAGTTTTGAACTTTGAATGTACTAGGAAGATAATTGGGTGGGAGAGTATGTCATCAACTCTGAGGGTAGAACAAATAGATTTTATCTAGTGAGTGTAAGAGCAATATTATTGGTTAGTCCATCAGCCAATTTTGATCTGACTAATTAGTGCACTAGTCGCAAATTGCTTCGTGATAGTTATGGCGTGGATGTTGAATGCTTGAAGCTATAAACCAAGACACTTGGATATGATATGAAGGCTGGTTACCTAGTTGGAAATTGAGTGCCATGGATTTAATTCTTTAAAGTTTGAACCCCACGAATTCATTTGTTAACATTATGTACCAAGTTTTGAGTTCACCCTCATGACTATAGCAATATGAATTTATGGATTCATACCAATCATAAACACGTGAAGAGCATTTCTGTTGTTGATATGTTCATTTCTATGGGATTATGGGAAGTCATTGCTAGGAGTTATTATTGAGCTTTCAGGAAATATGTATTTGAGACAAAGATCTTGTAAGTCGGAGCTTTATTGGATAGATGGTCTTGCAACCTAAGTGTATTAGTTGTGTATTGTTTTAGTAGCATCTCAATCAATGGTGTGTAACTTGCCATCTTATGTGACTTGTGAGTCATTTTATTTAATGAACTACAACTCTACAAGGATTTGCTATCCTGTCTAACACCAAAAGAATTTGTTTCTGTTTTTATATTTTGATTGGTAAGTAGGAAAATATTGAAATCTCAAATACCAGTTACAATGTTCAACCTTCCCGAGGAAGGCTTAAGTTCTAGAAAGGGCCTCCCCAAAGCCAAAGAATCATTGACAGATTAAGAACGGAAAAAAAAACATAAGGCACAATTGAGGCCAAAAGTTACAAGGCTTTACAAACACTAAACCATAATCTGTCATTACTAGATATCGTCTTTGGCATAAGCTATCCAACACGGATGGAAACTTGGGTCTTCACTTGTTTCACCAACTTATCAGGGTGGATGATTTTTCCATCCCACACAACACCATTTTTTTGCATAATACACAAGAGCCGCAAAAGCAGAAAAGACGAGTTTCTTTATAAAATATCTTTTGACATATTAAAGCATCCACTTACTACAAAAAAAAAAACATACTTTGTACAAGGAATTACTGTAGTGTTTAAAAAAGCGCGCTTAAGCTCTGAAGCGCAAAGCTTGAGGGCAAATTGCTTAATTAGGTCTGAGCGAAGCCTTATGATTAAGCGCCGAAGCGCGCTTAAGCGCATGAAGCACGGGAATCGCAAAAAAAGCGCGATTTTTGGTGCTTCATTGAAATTCTTTTATTTTTTATTACTTTACGTTGAAAGCTTTTTTTTAATATGTTATTATGTTTTGGACCACACCCTATGAATCCTTAACTATAGAAAGTAGGCCAAGAGTTCAAAAGAAAAGGAAAAAGAAGAAAAGAAGAAGACAACAGTCATAACAGCCGGTCCTAGCTTCTGGATAAACACTGTGTTATATGCTTTATTTTTGTTAAAACAAAGAATAATATATTTTAGGAAGCAAATCTGATGTATTTGTGGTTATTTTAGTAAGATATATATATACTTCGTACATAATAGTAAAAAAACCTTTAATTCTTAAAATGTGTGCTTCACTTCGGTGAAGCGCGTCTTGCACTTCCGCTTTACGCTTAAGCTCTAGGACTCATATCGCTTTAGTGCTCTTTGCTCTTATGTATACACTGGGAATCGCCTCAGTCCAATAAATCTGACTGTAGGGGAAAGAGAAGAAGAGTTGATCATTGGTCTCAGTATGTATTATTCCCACACAAACGACAGTTGGTCTCATCAACGGTCTTTAGTCACACAACTAGTTTCAACATGTCTAGCATTGCTAATCGTGCAATGAAACAATGCTTTGGGATGTTTAGTCAAACCAGATTATGCCTGGAAAGCTTGGTTAAAGCAGGTCTAAGCCACTTATACCCTCTAGACATACTATATCCTTTCATAGGATTAGCCTTCAAAATATTACATGATTGACCCAAATGTGAAGGTGTGATTTTTCTAGTGTGTTTAGCTCTTTCCTTCTACTATCTGGATATTTTCTGTTTTTCTTCTTAACTGTTAAAACTATCCGGAAATGCATATTATGACATAAGAGTACTATTGCTTTGGTTATGCTCATGAACTAGTCATTGTTGGATACTATCACCATAGTTATGCCTGTCTATGTTTTAACAATTTTTCCAGCTCTTGTTTGATCTTATGACAGTATGATATTTATAATGTGTGTTGATGTTTTCAGATGTTGAAGGAAAGGAAACATGTTATACAGTTTCCGGAGAGGTATGGTTAATTAGTTATGCTGCTCTGTTTGCTTTCTTATTTACTGGAGCTTATTATGTCCCCAGTGCGTTACAAATTTCAATTTCTCATTAACCACTAGAAGTACATGGATAATGAATTGCATACATTCTTGATATTATCAGCCTTGTTTCGTATTTTCGTATTATTTGATAGTTGGTTTAATCTCCTAGCTGATTGTATGAGGACTTTTTACACTATACAAAATATCAATGCCGTGAAGAGCAAAAGTGAAATCTTAAAAAATGAAAATAAAAACAGAATAAAGTAGCAGCCAGAGGCTCCCCGGAAAGGGTTGGGGAAAATAAATGGAAAGTCCATGTCTGAACCATGCGTTTTGACCTAATGTAATGCATTTTGACCTAATGTAATGCATCAAGAATAGGGGAATGGGTACTTTAGGTAATACAAAAAGTTAATGTTATTCTTAGCTTGGGTAGGATTGCAACTAGGGAGTTATATAGGTGAGATCAATTAGAGAGGAGGTATGATAAAAATGATCAGAGTTTTGTTTGTTTAGTGTTAGCTTTTTGTTTAGGGAGAGTCCAGCTACTCAACTCGCGTCGTCNAGTTTTGTTTGTTTAGTGTTAGCTTTTTGTTTAGGGAGAGTCCAGCTACTCAACTCGCGTCGTCTTATAATCGACTGTTGTTTTTCCCCCAGATGCCCTTGTCCTCATTCTCTTTTCTATATTTCTGATTTCCAGTCTTATAATCTTACATCACTTCAATCAGTGTTAACGCCTCCATCAAACTTCTTGTTGGAGATAACATCGAGGTCTTTTCCCTATTTCTCCTTTATCAAACCGTGTATCATAGGTAAAATGATTCTAAATGCTGGGATGCTTGGGTTGGTGCACAACAGTAATTGTATTTGTAGTCACACTGAGTTTACATTTCTAATGGTTGATTAACCTGTTCTTATCTGCTGATTCTTGCAAGCAATGGGGGAATTAACAAACAAGGCTAGCTTTTCCAAGGAAATTGAGGCTAGTTTGTAGAGTTGCACGTCATGAATTTTTATGGATGCTTATTTATTCCCTAGATGATTACCTAAAGATTAGAATGAATGCTTATTTATTCCTGGTCCTGATGTAAGATGTTAGGTATTAGATGCTCCACCATCATTGAGTTTTTGCTACAGTGTGTGTGTGTGTGTGTGNGTTTGGGGGGGGGGGGGGGGTGAGACTTGAGAGCTAGCAGGTACTTGGTGTGCTTTCATGGAAGCCTCTGAATTATTTACTGAACCTTGGCCGGATTTGGTAGATTCTGTTTATTTTGTTTATAGAGGAAATCCTGATTAAGCACACTTGATATCCAGCCTATTTTTGAAACCATAAAATCGAACTTTAGTTAAAATTTCTTCTTTCAGAATATTATTAACATGTATAATTTGTTGGCAAGACTCGATGACTGGGCTGAGTGGCGATACCCTCTTCACAAAATAGTTCCGGTTCCACAGATTGTTGGGATGACTGGTGATACCATTGTTACATCATACATGTCAAAAGCTTTTGTCTCTGATGCCAAAGAACGACATCCTCCAATAAATATTGTTGTTCCCTAGGAATCTAGGACCCCTTCAGCCTTCATACCTACCTATCTGGTCAGTAATGTCTTCTGCTGTTGTTATTGTTGTATACTGTGACATGATCCCTAGCCTGAGATTAAGGTTTACAAGGTGAACTACTGAAGTCTTCTAGAGACATAAAGAGGGTTTAAGTTTGTAAACCACAGGGACTCTTCATTTCTATGCTGCCTTCTTCTCACCCATTCTGTAATATACTCTGACGCTCCGTAGTGAGTAAATCTTCCTTTTAAATGCTATTTCGCTGGCTATTAGATGGTGGTAGAAGATTCTTGGGTATTCTTTGATTTCTTGGTTATTTTTTTAAGTAAGAATGACCATAAATAATCCCAAGTAACTTCCATCTTTTAAATTAATTTTAATTCTGTGTTTTATGGGGACTTTCTCAAAATAGTTCAAGTGTTAGTTTTCTTATCTTTGTTGGGTTTTTTAGGGTTAGTTGTGCAGGAAAGAAACACTTAAAATAATTTTGAAAAGACAGCCCCAGAACTTGGTATTATTTCTGAATAATCAAATTATGGGATTAATTTAACATGAAAGAGAATTAGGATTATGCGTTTCATTTTTTTCTTAAAAATTTCACTGGGTCCTCTTAGTTGCTTCGAACTGACTTCAGACTTTTTCCATATTACATACTAAGAACTTTTATTTGATACTTCCTCCATTTTTTTTTTTAATTGCACCATCTGGGATTTCACGCTTGCCAACGCACTATTTTAACTACTAGTATCTCTCATTATACATTTTAAAAAATTATAAAAATTTGATAATTTGAAAGTATATTTCGAGACGAATCTAACAAGATCCCACATGAGTATATTTTTCCTTACATATAAATCACAAAAAATAACTATATAAGAATAAGAGAATAGTGCTAAAACCAAGATGGTGCAATTATAAAAAAACGGAGGAAGTACATCGTATGTTTTATTTTTTTTGGGTTTAGCTGACACTTTCTGGGTTATTTATCCTATAGGATATTAGAAGGGCATTACAAATGGAGCCATTCGTGAAGGTGGATGGAGTGATGTCTGGCGAAGTGAAAGTACAACGACAAGAGGTAAGTGGAGCTGATATGAAAACCTGTAAATACAGCGTTGTCATTTCCTGGAATGTGGAGTTCTGATGTCTGTTGTTGGTGTAATTTTCTTTGCAGATTAACCAACCATGTGAAAAGTGCGCACACAGTCCTGTTGAGCTGGTTGATTCAAGACAAGTAAGCTCTATAACATTTTGCACTTATTTTTCACTTATTTGTTTAACTTGATTGCTCATTTGGAGAGCTGAATTTAAAATGTATACAGACGAGATCAGCAGATGAAGGACAGACTAATTTCTACGAGTGCCCTTCATGTCGACACCGTTGGAAGGAAAACTCTTAGCTCTTTTTTTCAAGTATATTGTGGGAGCTACGTTGTTGGTTGTCATCTTGAAGCCATTATTTGGTAATTTTGCTTGTCTAACCCGTCAGTTTTGGTGCATGTTGGGTTATAAACTTCCGCAGCAGGTTGGGTTGGGAACATTGTATGGTACTCCATATCTAGTTTGTAGTACAACGTACATGTTCATTTTGCGATATGGAGTATATCTTTGTGCTATCAGGTAATAGATAATATACCTTTCATGTTATTTATTCCATCGCTTGCATCATATTCTTTTTAAGGGAACTCCAAAATAGTTTTTTGATGAAGTTTCAAAATACTTCAGTTGCTAACGTCTCTATGATTGGTAGCTATTTTGTGCCTTTAAACAAAATTTGTATTACAATCTTCTAGAGGCAGTAAATACAGAACTTGTCTTCTCTCCATTTTCGTAGATCACTTTGAAGTTTGAAGTTATGGCACATATATTTGTATTGTCAAAAACATTCTATGAAGATGGACTTTATTGGTAGAGCTTTTCTATGTCAGCGTTCCATATGTTTGGGACTTGTTTGGTTGACCTGGGGAATTAAATCTCACATAGGAAGTACTTCAAGGGAAGTTACTTCCTTTATTTATTAAATTCCTACGAAACTTACTTCCCATCGGAATTTTCCATGCAGTTTGATTGAACGGGGGTTGGGGGGCGCTTGGAAATTTACTTCCCATGTTTTTGGAGGAAGTCCAAATTCCATTGAGTTTCAACTTCATTTTTTAATTTTTATATCAACCAAACAACGGTCTTGAGCTTCCTTTTAAAGCACAGTTGAAATCGATCACAATACAACGAGTTGACAAACAAGCTTGAGATATCAATCGTATCTATCTTTGTTCGGGATTGAATTTGGATCCAATGCCTCAATTCGTGGAGGTGTTTTGGGCTTGTTTTGATCGGATTGGCATGTATTGGTCATAATCGTCTTATTCTTTTGCACTTTAAGAGCATATCAAGCTCATTGTCC

mRNA sequence

ATGAAAAACCCAAAGTTAATTATTGCTGTACCGCAAGACACTACCCGTGATAACGCGGTTCGCACCGCCGAACCTCACGCATTCCACACCCTGCCACCACCCTGTTTGCCGGTCGTCATCCCGCTTCTCACCACCGCCACCAACCTTCTCTCCTCTTCCGTAATAATCGAGGCCGCTGTCCTCTCTATCTCGCCGGCCATATCTTCTCGCCGGCCATATCTTCTGTTTCTCCTCTTTTCTCAAGGAGTTAGTATGGATTTTTCTAGAAGGCGTGATTTTTTGTTCTGTGGCTCATGTGGGACGATGTTGTCTTTGCCATCAACTAAGTATGCTCGATGCCCTTTGTGCCGCACTAAGAAAAATGTCAAAGATGTTGAAGGAAAGGAAACATGTTATACAGTTTCCGGAGAGGATATTAGAAGGGCATTACAAATGGAGCCATTCGTGAAGGTGGATGGAGTGATGTCTGGCGAAGTGAAAGTACAACGACAAGAGATTAACCAACCATGTGAAAAGTGCGCACACAGTCCTGTTGAGCTGGTTGATTCAAGACAAACGAGATCAGCAGATGAAGGACAGACTAATTTCTACGAGTGCCCTTCATGTCGACACCGTTGGAAGGAAAACTCTTAGCTCTTTTTTTCAAGTATATTGTGGGAGCTACGTTGTTGGTTGTCATCTTGAAGCCATTATTTGGTAATTTTGCTTGTCTAACCCGTCAGTTTTGGTGCATGTTGGGTTATAAACTTCCGCAGCAGGTTGGGTTGGGAACATTGTATGGTACTCCATATCTAGTTTGTAGTACAACGTACATGTTCATTTTGCGATATGGAGTATATCTTTGTGCTATCAGGTAATAGATAATATACCTTTCATGTTATTTATTCCATCGCTTGCATCATATTCTTTTTAAGGGAACTCCAAAATAGTTTTTTGATGAAGTTTCAAAATACTTCAGTTGCTAACGTCTCTATGATTGGTAGCTATTTTGTGCCTTTAAACAAAATTTGTATTACAATCTTCTAGAGGCAGTAAATACAGAACTTGTCTTCTCTCCATTTTCGTAGATCACTTTGAAGTTTGAAGTTATGGCACATATATTTGTATTGTCAAAAACATTCTATGAAGATGGACTTTATTGGTAGAGCTTTTCTATGTCAGCGTTCCATATGTTTGGGACTTGTTTGGTTGACCTGGGGAATTAAATCTCACATAGGAAGTACTTCAAGGGAAGTTACTTCCTTTATTTATTAAATTCCTACGAAACTTACTTCCCATCGGAATTTTCCATGCAGTTTGATTGAACGGGGGTTGGGGGGCGCTTGGAAATTTACTTCCCATGTTTTTGGAGGAAGTCCAAATTCCATTGAGTTTCAACTTCATTTTTTAATTTTTATATCAACCAAACAACGGTCTTGAGCTTCCTTTTAAAGCACAGTTGAAATCGATCACAATACAACGAGTTGACAAACAAGCTTGAGATATCAATCGTATCTATCTTTGTTCGGGATTGAATTTGGATCCAATGCCTCAATTCGTGGAGGTGTTTTGGGCTTGTTTTGATCGGATTGGCATGTATTGGTCATAATCGTCTTATTCTTTTGCACTTTAAGAGCATATCAAGCTCATTGTCC

Coding sequence (CDS)

ATGAAAAACCCAAAGTTAATTATTGCTGTACCGCAAGACACTACCCGTGATAACGCGGTTCGCACCGCCGAACCTCACGCATTCCACACCCTGCCACCACCCTGTTTGCCGGTCGTCATCCCGCTTCTCACCACCGCCACCAACCTTCTCTCCTCTTCCGTAATAATCGAGGCCGCTGTCCTCTCTATCTCGCCGGCCATATCTTCTCGCCGGCCATATCTTCTGTTTCTCCTCTTTTCTCAAGGAGTTAGTATGGATTTTTCTAGAAGGCGTGATTTTTTGTTCTGTGGCTCATGTGGGACGATGTTGTCTTTGCCATCAACTAAGTATGCTCGATGCCCTTTGTGCCGCACTAAGAAAAATGTCAAAGATGTTGAAGGAAAGGAAACATGTTATACAGTTTCCGGAGAGGATATTAGAAGGGCATTACAAATGGAGCCATTCGTGAAGGTGGATGGAGTGATGTCTGGCGAAGTGAAAGTACAACGACAAGAGATTAACCAACCATGTGAAAAGTGCGCACACAGTCCTGTTGAGCTGGTTGATTCAAGACAAACGAGATCAGCAGATGAAGGACAGACTAATTTCTACGAGTGCCCTTCATGTCGACACCGTTGGAAGGAAAACTCTTAG

Protein sequence

MKNPKLIIAVPQDTTRDNAVRTAEPHAFHTLPPPCLPVVIPLLTTATNLLSSSVIIEAAVLSISPAISSRRPYLLFLLFSQGVSMDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQMEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRWKENS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11191.1Spo11191.1mRNA


Homology
BLAST of Spo11191.1 vs. NCBI nr
Match: gi|902185232|gb|KNA10455.1| (hypothetical protein SOVF_144290 [Spinacia oleracea])

HSP 1 Score: 267.3 bits (682), Expect = 2.200e-68
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ
Sbjct: 1   MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH
Sbjct: 61  MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 120

Query: 205 RWKENS 211
           RWKENS
Sbjct: 121 RWKENS 126

BLAST of Spo11191.1 vs. NCBI nr
Match: gi|731361685|ref|XP_010692494.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 235.7 bits (600), Expect = 7.200e-59
Identity = 108/126 (85.71%), Postives = 119/126 (94.44%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           MD+ RRRDFLFC SCGTMLSL STK+ARCPLC+TKK VK+VEGKET YT+SGEDIRRALQ
Sbjct: 1   MDYCRRRDFLFCDSCGTMLSLNSTKHARCPLCKTKKRVKEVEGKETFYTISGEDIRRALQ 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           MEPFVKVDGV+SG+VKV+RQ++NQPCE C HSPVELVDSRQTRSADEGQTNF+ECPSCRH
Sbjct: 61  MEPFVKVDGVISGDVKVERQQVNQPCEMCGHSPVELVDSRQTRSADEGQTNFFECPSCRH 120

Query: 205 RWKENS 211
           RWKENS
Sbjct: 121 RWKENS 126

BLAST of Spo11191.1 vs. NCBI nr
Match: gi|720025589|ref|XP_010263999.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Nelumbo nucifera])

HSP 1 Score: 150.2 bits (378), Expect = 4.000e-33
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           M + + RDFLFC  CGT+LSL S KYA CPLC  K++ K++ GKETCYTV+ EDIRR L 
Sbjct: 1   MAYFQGRDFLFCDLCGTLLSLNSRKYAECPLCGFKRSGKEMAGKETCYTVTAEDIRRELG 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           +EPFVK+DG  + E +VQR  +N+ C +C H  +E   ++Q RSADEGQT FYECP CRH
Sbjct: 61  IEPFVKLDGYDNDEEEVQRAVVNESCPRCRHPQLEYY-TKQLRSADEGQTVFYECPKCRH 120

Query: 205 RWKENS 211
           ++  N+
Sbjct: 121 KFSINT 125

BLAST of Spo11191.1 vs. NCBI nr
Match: gi|731429993|ref|XP_003634465.2| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Vitis vinifera])

HSP 1 Score: 149.4 bits (376), Expect = 6.800e-33
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           M +SR+RDF+FC  CGTML + STKYA CPLC++++ VKD+ G+E  YTVS EDIRR L 
Sbjct: 1   MAYSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELN 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           +EPFVK+DG+++ E + Q  +    C++C         +RQ RSADEGQT FYEC  C H
Sbjct: 61  IEPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIFYECTKCGH 120

Query: 205 RWKENS 211
           +W +N+
Sbjct: 121 KWSQNT 126

BLAST of Spo11191.1 vs. NCBI nr
Match: gi|672114069|ref|XP_008775237.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 141.7 bits (356), Expect = 1.400e-30
Identity = 74/151 (49.01%), Postives = 96/151 (63.58%), Query Frame = 1

		  

Query: 61  LSIS-PAISSRRPYLLFLLFSQGVSMDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTK 120
           LS+S P +S+RRP       S+   M F   RDFLFCG CGT+LS  S  +A CPLC  K
Sbjct: 36  LSLSLPPLSARRPS------SERQGMAFCEARDFLFCGMCGTLLSFDSLDFAECPLCGFK 95

Query: 121 KNVKDVEGKETCYTVSGEDIRRALQMEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVE 180
           +  KD+EG+E  Y +  EDIRR L++EPFV ++     E  VQR  +N+ C +C H  +E
Sbjct: 96  RAAKDIEGREAQYIIIAEDIRRELKIEPFVVLETTPVDEAVVQRAVVNESCPQCHHPQLE 155

Query: 181 LVDSRQTRSADEGQTNFYECPSCRHRWKENS 211
              +RQ RSADEGQT FYECP CRH++  N+
Sbjct: 156 YY-TRQLRSADEGQTVFYECPECRHKFSVNT 179

BLAST of Spo11191.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QT80_SPIOL (DNA-directed RNA polymerase subunit OS=Spinacia oleracea GN=SOVF_144290 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.600e-68
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ
Sbjct: 1   MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH
Sbjct: 61  MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 120

Query: 205 RWKENS 211
           RWKENS
Sbjct: 121 RWKENS 126

BLAST of Spo11191.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFN6_BETVU (DNA-directed RNA polymerase subunit OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g020650 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.000e-59
Identity = 108/126 (85.71%), Postives = 119/126 (94.44%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           MD+ RRRDFLFC SCGTMLSL STK+ARCPLC+TKK VK+VEGKET YT+SGEDIRRALQ
Sbjct: 1   MDYCRRRDFLFCDSCGTMLSLNSTKHARCPLCKTKKRVKEVEGKETFYTISGEDIRRALQ 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           MEPFVKVDGV+SG+VKV+RQ++NQPCE C HSPVELVDSRQTRSADEGQTNF+ECPSCRH
Sbjct: 61  MEPFVKVDGVISGDVKVERQQVNQPCEMCGHSPVELVDSRQTRSADEGQTNFFECPSCRH 120

Query: 205 RWKENS 211
           RWKENS
Sbjct: 121 RWKENS 126

BLAST of Spo11191.1 vs. UniProtKB/TrEMBL
Match: M0T620_MUSAM (DNA-directed RNA polymerase subunit OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.400e-29
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           M F   RDFLFC  CGT+LS  S  +ARCPLC  K+   D+EG+ET YTV+ EDIRR L+
Sbjct: 1   MSFCHARDFLFCSMCGTLLSFDSLHFARCPLCGFKRAAGDIEGRETRYTVTAEDIRRELK 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           +EPFV ++     +  VQR  +N+ C +C H  +E   ++Q RSADEGQT FYECP CRH
Sbjct: 61  IEPFVILESAPVDDEAVQRAVVNEECPQCRHPQLEYY-TKQLRSADEGQTVFYECPQCRH 120

Query: 205 RWKENS 211
           ++  N+
Sbjct: 121 KFSINT 125

BLAST of Spo11191.1 vs. UniProtKB/TrEMBL
Match: J3LS48_ORYBR (DNA-directed RNA polymerase subunit OS=Oryza brachyantha PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.200e-29
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           M F + RDFLFCG CGT+L+  S  YA CPLC  K+  K+++GKET Y V+GEDIRR L+
Sbjct: 1   MAFWQARDFLFCGVCGTLLTFDSLHYASCPLCGFKRKTKEIQGKETRYAVTGEDIRRDLK 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           ++PFV ++  +  E  V+R  IN+ C +C +  +E   ++Q RSADEGQT F+EC  CRH
Sbjct: 61  LDPFVVLESTLKDETAVKRATINRLCPECGYHELEYY-TKQLRSADEGQTVFFECRDCRH 120

Query: 205 RWKEN 210
           ++ EN
Sbjct: 121 KFNEN 124

BLAST of Spo11191.1 vs. UniProtKB/TrEMBL
Match: F2D9U5_HORVD (DNA-directed RNA polymerase subunit OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.400e-29
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           M F + RDFLFCG CGT+L   S +YA CPLC  K+  KD+EGKET Y V+ EDIRR L+
Sbjct: 1   MAFWQARDFLFCGVCGTLLDFNSHRYASCPLCGFKRKAKDIEGKETRYAVTAEDIRRELK 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           ++PFV ++   + ++ VQR    + C KC H  +E   ++Q RSADEGQT FYECP C H
Sbjct: 61  IKPFVVLESAPNLDIVVQRSLTERACPKCNHHELEYY-TKQLRSADEGQTIFYECPECGH 120

Query: 205 RWKENS 211
            + EN+
Sbjct: 121 AFNENT 125

BLAST of Spo11191.1 vs. ExPASy Swiss-Prot
Match: RPA12_BOVIN (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.800e-9
Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 1

		  

Query: 88  SRRRDFLFCGSCGTMLSLPSTKYA-RCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQME 147
           S + D  FC  CG++L LP  + A  C  C    NV+D EGK    +V    +  A+ + 
Sbjct: 9   SFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLS 68

Query: 148 PFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRW 207
                   M    + Q   +++ C +C H  +    +RQ RSADEGQT FY C +C+ + 
Sbjct: 69  --------MEEGPEFQGPVVDRRCSRCGHEGMAY-HTRQMRSADEGQTVFYTCTNCKFQE 123

Query: 208 KENS 211
           KE+S
Sbjct: 129 KEDS 123

BLAST of Spo11191.1 vs. ExPASy Swiss-Prot
Match: RPA12_MACMU (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.400e-9
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 1

		  

Query: 88  SRRRDFLFCGSCGTMLSLPSTK-YARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQME 147
           S + D  FC  CG++L LP  +    C  C    NV+D EGK    +V    +  A+ M 
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 148 PFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRW 207
                  V  G  + Q   +++ C +C H  +    +RQ RSADEGQT FY C +C+ + 
Sbjct: 72  -------VEEGP-ECQGPVVDRRCPRCGHEGMAY-HTRQMRSADEGQTVFYTCTNCKFQE 126

Query: 208 KENS 211
           KE+S
Sbjct: 132 KEDS 126

BLAST of Spo11191.1 vs. ExPASy Swiss-Prot
Match: RPA12_HUMAN (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.000e-9
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 1

		  

Query: 88  SRRRDFLFCGSCGTMLSLPSTK-YARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQME 147
           S + D  FC  CG++L LP  +    C  C    NV+D EGK    +V    +  A+ M 
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 148 PFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRW 207
                  V  G  + Q   +++ C +C H  +    +RQ RSADEGQT FY C +C+ + 
Sbjct: 72  -------VEEGP-ECQGPVVDRRCPRCGHEGMAY-HTRQMRSADEGQTVFYTCTNCKFQE 126

Query: 208 KENS 211
           KE+S
Sbjct: 132 KEDS 126

BLAST of Spo11191.1 vs. ExPASy Swiss-Prot
Match: RPA12_PANTR (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.000e-9
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 1

		  

Query: 88  SRRRDFLFCGSCGTMLSLPSTK-YARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQME 147
           S + D  FC  CG++L LP  +    C  C    NV+D EGK    +V    +  A+ M 
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 148 PFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRW 207
                  V  G  + Q   +++ C +C H  +    +RQ RSADEGQT FY C +C+ + 
Sbjct: 72  -------VEEGP-ECQGPVVDRRCPRCGHEGMAY-HTRQMRSADEGQTVFYTCTNCKFQE 126

Query: 208 KENS 211
           KE+S
Sbjct: 132 KEDS 126

BLAST of Spo11191.1 vs. ExPASy Swiss-Prot
Match: RPA12_RAT (DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus GN=Znrd1 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-7
Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 1

		  

Query: 92  DFLFCGSCGTMLSLPSTK-YARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQMEPFVK 151
           D  FC  CG++L LP  +    CP C    +V+D  GK    +V    +   + M     
Sbjct: 13  DLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMS---- 72

Query: 152 VDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRWKENS 211
           VD     +  V    +++ C +C H  +    +RQ RSADEGQT FY C +C+ + KE+S
Sbjct: 73  VDEGPESQGPV----VDRRCSRCGHEGMAYY-TRQMRSADEGQTVFYTCINCKFQEKEDS 123

BLAST of Spo11191.1 vs. TAIR (Arabidopsis)
Match: AT3G25940.1 (TFIIB zinc-binding protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.300e-29
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQ 144
           M+ SR  +FLFC  CGTML L STKYA CP C+T +N KD+  KE  YTVS EDIRR L 
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 145 MEPFVKVDGVMSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRH 204
           +  F +       + + +  +I + CEKC H P  +  +RQTRSADEGQT +Y CP+C H
Sbjct: 61  ISLFGE-----KTQAEAELPKIKKACEKCQH-PELVYTTRQTRSADEGQTTYYTCPNCAH 118

Query: 205 RWKE 209
           R+ E
Sbjct: 121 RFTE 118

BLAST of Spo11191.1 vs. TAIR (Arabidopsis)
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 65.1 bits (157), Expect = 6.000e-11
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1

		  

Query: 85  MDFSRRRDFLFCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGE 138
           M+ SR  D LFC  CGTML L STKYA CPLC T +N K++  K   YTV+ E
Sbjct: 1   MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

BLAST of Spo11191.1 vs. TAIR (Arabidopsis)
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 48.1 bits (113), Expect = 7.500e-6
Identity = 32/114 (28.07%), Postives = 48/114 (42.11%), Query Frame = 1

		  

Query: 95  FCGSCGTMLSLPSTKYARCPLCRTKKNVKDVEGKETCYTVSGEDIRRALQMEPFVKVDGV 154
           FC +CG +L       +R   C T   V ++E +     +  + +     +EP V  D +
Sbjct: 3   FCPTCGNLLRYEGGGSSRF-FCSTCPYVANIERR---VEIKKKQLLVKKSIEPVVTKDDI 62

Query: 155 MSGEVKVQRQEINQPCEKCAHSPVELVDSRQTRSADEGQTNFYECPSCRHRWKE 209
            +        E   PC +C H       S Q RSADE ++ FY C  C   W+E
Sbjct: 63  PTAA------ETEAPCPRCGHDKAYF-KSMQIRSADEPESRFYRCLKCEFTWRE 105

The following BLAST results are available for this feature:
BLAST of Spo11191.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902185232|gb|KNA10455.1|2.2e-68100.hypothetical protein SOVF_1442... [more]
gi|731361685|ref|XP_010692494.1|7.2e-5985.7PREDICTED: DNA-directed RNA po... [more]
gi|720025589|ref|XP_010263999.1|4.0e-3356.3PREDICTED: DNA-directed RNA po... [more]
gi|731429993|ref|XP_003634465.2|6.8e-3352.3PREDICTED: DNA-directed RNA po... [more]
gi|672114069|ref|XP_008775237.1|1.4e-3049.0PREDICTED: DNA-directed RNA po... [more]
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BLAST of Spo11191.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QT80_SPIOL1.6e-68100.DNA-directed RNA polymerase su... [more]
A0A0J8BFN6_BETVU5.0e-5985.7DNA-directed RNA polymerase su... [more]
M0T620_MUSAM1.4e-2951.5DNA-directed RNA polymerase su... [more]
J3LS48_ORYBR4.2e-2950.4DNA-directed RNA polymerase su... [more]
F2D9U5_HORVD5.4e-2951.5DNA-directed RNA polymerase su... [more]
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BLAST of Spo11191.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPA12_BOVIN1.8e-933.8DNA-directed RNA polymerase I ... [more]
RPA12_MACMU2.4e-934.6DNA-directed RNA polymerase I ... [more]
RPA12_HUMAN4.0e-934.6DNA-directed RNA polymerase I ... [more]
RPA12_PANTR4.0e-934.6DNA-directed RNA polymerase I ... [more]
RPA12_RAT1.3e-733.3DNA-directed RNA polymerase I ... [more]
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BLAST of Spo11191.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G25940.16.3e-2950.8TFIIB zinc-binding protein[more]
AT1G20065.26.0e-1156.6FUNCTIONS IN: molecular_functi... [more]
AT4G07950.17.5e-628.0DNA-directed RNA polymerase, s... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 169..207
score: 3.5
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 168..208
score: 1.
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 166..207
score: 11
IPR005735Zinc finger, LSD1-typeTIGRFAMsTIGR01053TIGR01053coord: 95..118
score: 7.
NoneNo IPR availableGENE3D2.20.25.10coord: 158..209
score: 6.3
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 88..209
score: 2.8
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 88..209
score: 2.8
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 162..209
score: 1.06

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0010287 plastoglobule
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression