Spo11195 (gene) | SpinachBase

Overview


Name	Spo11195
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ELF4 protein
Location	chr1 : 26460409 .. 26460852 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTACTCGGGAGCTGAATCGAGTATGGAAGACGGCGATCGTCGGCAAAACATGGTGTCTGCTGGAGGCGCCGGCAACCGTCGCCGTAGAACAAACAATATGGACGAGTTCTCCGGCGACGGTTGCGGGAACCCGCAGGCTTGGAATGCCTTCGCGGACAGCTTCAGTGAGGTGCAGACGGTGCTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAATCATCAGTCGAGGATCCCGGATAACATGAAAAAGAATGTGGCGATCATCCAGGAACTGAACGGAAACATCACGAAAGTGGCGTCGATTTACTCCGATTTGTCGGCGAATTTCAGCGGGAGCGTGAGGCAGCAACCGCAAGGCGGTGGCGGGAAGGGGAGTTGTAAAGGAGGAAATGGAAATAACGGGAGGAGGAATGGTGGAGGTGATCAAAGATGA

mRNA sequence

ATGTCTTACTCGGGAGCTGAATCGAGTATGGAAGACGGCGATCGTCGGCAAAACATGGTGTCTGCTGGAGGCGCCGGCAACCGTCGCCGTAGAACAAACAATATGGACGAGTTCTCCGGCGACGGTTGCGGGAACCCGCAGGCTTGGAATGCCTTCGCGGACAGCTTCAGTGAGGTGCAGACGGTGCTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAATCATCAGTCGAGGATCCCGGATAACATGAAAAAGAATGTGGCGATCATCCAGGAACTGAACGGAAACATCACGAAAGTGGCGTCGATTTACTCCGATTTGTCGGCGAATTTCAGCGGGAGCGTGAGGCAGCAACCGCAAGGCGGTGGCGGGAAGGGGAGTTGTAAAGGAGGAAATGGAAATAACGGGAGGAGGAATGGTGGAGGTGATCAAAGATGA

Coding sequence (CDS)

ATGTCTTACTCGGGAGCTGAATCGAGTATGGAAGACGGCGATCGTCGGCAAAACATGGTGTCTGCTGGAGGCGCCGGCAACCGTCGCCGTAGAACAAACAATATGGACGAGTTCTCCGGCGACGGTTGCGGGAACCCGCAGGCTTGGAATGCCTTCGCGGACAGCTTCAGTGAGGTGCAGACGGTGCTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAATCATCAGTCGAGGATCCCGGATAACATGAAAAAGAATGTGGCGATCATCCAGGAACTGAACGGAAACATCACGAAAGTGGCGTCGATTTACTCCGATTTGTCGGCGAATTTCAGCGGGAGCGTGAGGCAGCAACCGCAAGGCGGTGGCGGGAAGGGGAGTTGTAAAGGAGGAAATGGAAATAACGGGAGGAGGAATGGTGGAGGTGATCAAAGATGA

Protein sequence

MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGGGDQR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11195.1	Spo11195.1	mRNA

Homology

[Close]

BLAST of Spo11195.1 vs. NCBI nr
Match: gi|902227640|gb|KNA20765.1| (hypothetical protein SOVF_049350 [Spinacia oleracea])

HSP 1 Score: 278.9 bits (712), Expect = 5.200e-72
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ
Sbjct: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ
Sbjct: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120

Query: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 148
           PQGGGGKGSCKGGNGNNGRRNGGGDQR
Sbjct: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 147

[Close]

BLAST of Spo11195.1 vs. NCBI nr
Match: gi|731315048|ref|XP_010689700.1| (PREDICTED: protein EARLY FLOWERING 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 204.5 bits (519), Expect = 1.200e-49
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAES MEDG RRQN+ SAGGAGNRRRRTN++++FSGDGCG+ ++WNAFADSFS+VQ
Sbjct: 1   MSYSGAESRMEDGTRRQNIASAGGAGNRRRRTNDVEDFSGDGCGDHESWNAFADSFSQVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNR+LIQQANENHQSR+PDNM KNVAIIQELNGNITKVASIY+DLS NFSG V+  
Sbjct: 61  TVLDRNRLLIQQANENHQSRMPDNMVKNVAIIQELNGNITKVASIYADLSTNFSGKVK-A 120

Query: 121 PQGGGGKGSCKGGNGN 137
           P GGGGKG   GG  N
Sbjct: 121 PGGGGGKGGSSGGRRN 135

[Close]

BLAST of Spo11195.1 vs. NCBI nr
Match: gi|902227639|gb|KNA20764.1| (hypothetical protein SOVF_049340 [Spinacia oleracea])

HSP 1 Score: 196.1 bits (497), Expect = 4.400e-47
Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRT----NNMDEFSGDGCGNPQAWNAFADSF 60
           MSY G  SSMEDG+R QNM SAG AGNRRRRT    N+  EFSGDGC +P+AW+ FADS+
Sbjct: 1   MSYFGGGSSMEDGNREQNMASAGDAGNRRRRTSGYHNDTGEFSGDGCRDPEAWSNFADSY 60

Query: 61  SEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGS 120
           S+VQTVLDRNRMLIQQANENHQSRIPDNM KNVAIIQELNGNITKVASIYSDLS NF+G 
Sbjct: 61  SQVQTVLDRNRMLIQQANENHQSRIPDNMVKNVAIIQELNGNITKVASIYSDLSTNFTGR 120

Query: 121 VRQQPQGGGGKGSCKGGNGNNGRRN 142
           VRQQ QG GGKG   GG+ + GRRN
Sbjct: 121 VRQQRQGSGGKGVGNGGS-SGGRRN 144

[Close]

BLAST of Spo11195.1 vs. NCBI nr
Match: gi|731315044|ref|XP_010689678.1| (PREDICTED: protein EARLY FLOWERING 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 195.3 bits (495), Expect = 7.600e-47
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 1

		  
Query: 2   SYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQT 61
           S S AES MEDG+RR N V+ GGAGNRRRR++++DEFSG+GCG+P+ WNAFADSFS VQT
Sbjct: 4   SLSRAESIMEDGNRRHNTVADGGAGNRRRRSDHVDEFSGEGCGDPETWNAFADSFSRVQT 63

Query: 62  VLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQP 121
           VLDRNRMLIQQANENHQSR+PDNM+KNVAIIQELNGNI+KVASIYSDLS NFSG VRQ  
Sbjct: 64  VLDRNRMLIQQANENHQSRMPDNMEKNVAIIQELNGNISKVASIYSDLSTNFSGRVRQHR 123

Query: 122 QGGGGKGSCKGGNGNNGRRN 142
           QGG  KGS       NGRRN
Sbjct: 124 QGGVEKGS------GNGRRN 137

[Close]

BLAST of Spo11195.1 vs. NCBI nr
Match: gi|870867338|gb|KMT18207.1| (hypothetical protein BVRB_2g023780 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 190.7 bits (483), Expect = 1.900e-45
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 1

		  
Query: 10  MEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRML 69
           MEDG+RR N V+ GGAGNRRRR++++DEFSG+GCG+P+ WNAFADSFS VQTVLDRNRML
Sbjct: 1   MEDGNRRHNTVADGGAGNRRRRSDHVDEFSGEGCGDPETWNAFADSFSRVQTVLDRNRML 60

Query: 70  IQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 129
           IQQANENHQSR+PDNM+KNVAIIQELNGNI+KVASIYSDLS NFSG VRQ  QGG  KGS
Sbjct: 61  IQQANENHQSRMPDNMEKNVAIIQELNGNISKVASIYSDLSTNFSGRVRQHRQGGVEKGS 120

Query: 130 CKGGNGNNGRRN 142
                  NGRRN
Sbjct: 121 ------GNGRRN 126

[Close]

BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049350 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.600e-72
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ
Sbjct: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ
Sbjct: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120

Query: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 148
           PQGGGGKGSCKGGNGNNGRRNGGGDQR
Sbjct: 121 PQGGGGKGSCKGGNGNNGRRNGGGDQR 147

[Close]

BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1Q2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023800 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.700e-50
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQ 60
           MSYSGAES MEDG RRQN+ SAGGAGNRRRRTN++++FSGDGCG+ ++WNAFADSFS+VQ
Sbjct: 1   MSYSGAESRMEDGTRRQNIASAGGAGNRRRRTNDVEDFSGDGCGDHESWNAFADSFSQVQ 60

Query: 61  TVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQ 120
           TVLDRNR+LIQQANENHQSR+PDNM KNVAIIQELNGNITKVASIY+DLS NFSG V+  
Sbjct: 61  TVLDRNRLLIQQANENHQSRMPDNMVKNVAIIQELNGNITKVASIYADLSTNFSGKVK-A 120

Query: 121 PQGGGGKGSCKGGNGN 137
           P GGGGKG   GG  N
Sbjct: 121 PGGGGGKGGSSGGRRN 135

[Close]

BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPE7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049340 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.100e-47
Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRT----NNMDEFSGDGCGNPQAWNAFADSF 60
           MSY G  SSMEDG+R QNM SAG AGNRRRRT    N+  EFSGDGC +P+AW+ FADS+
Sbjct: 1   MSYFGGGSSMEDGNREQNMASAGDAGNRRRRTSGYHNDTGEFSGDGCRDPEAWSNFADSY 60

Query: 61  SEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGS 120
           S+VQTVLDRNRMLIQQANENHQSRIPDNM KNVAIIQELNGNITKVASIYSDLS NF+G 
Sbjct: 61  SQVQTVLDRNRMLIQQANENHQSRIPDNMVKNVAIIQELNGNITKVASIYSDLSTNFTGR 120

Query: 121 VRQQPQGGGGKGSCKGGNGNNGRRN 142
           VRQQ QG GGKG   GG+ + GRRN
Sbjct: 121 VRQQRQGSGGKGVGNGGS-SGGRRN 144

[Close]

BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CX73_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023780 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.300e-45
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 1

		  
Query: 10  MEDGDRRQNMVSAGGAGNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRML 69
           MEDG+RR N V+ GGAGNRRRR++++DEFSG+GCG+P+ WNAFADSFS VQTVLDRNRML
Sbjct: 1   MEDGNRRHNTVADGGAGNRRRRSDHVDEFSGEGCGDPETWNAFADSFSRVQTVLDRNRML 60

Query: 70  IQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 129
           IQQANENHQSR+PDNM+KNVAIIQELNGNI+KVASIYSDLS NFSG VRQ  QGG  KGS
Sbjct: 61  IQQANENHQSRMPDNMEKNVAIIQELNGNISKVASIYSDLSTNFSGRVRQHRQGGVEKGS 120

Query: 130 CKGGNGNNGRRN 142
                  NGRRN
Sbjct: 121 ------GNGRRN 126

[Close]

BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Match: Q6UEI6_MESCR (Early flowering 4 OS=Mesembryanthemum crystallinum GN=ELF4 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.000e-34
Identity = 96/146 (65.75%), Postives = 106/146 (72.60%), Query Frame = 1

		  
Query: 1   MSYSGAESSMEDGDRRQNMVSAGGAGNRRRRTNNMDE-------FSGDGCGNPQAWNAFA 60
           MSYSGAESSMEDG        AG   NRRRR+NN +        FSG   G+P  WNAFA
Sbjct: 2   MSYSGAESSMEDGGNHHRQTLAG---NRRRRSNNNNNNNNGEEYFSG---GDPAEWNAFA 61

Query: 61  DSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSANF 120
           +SFS+VQ+VLDRNRMLIQQANENHQSR+PDNM KNVAIIQELNGNI+KVASIYSDLS NF
Sbjct: 62  ESFSKVQSVLDRNRMLIQQANENHQSRVPDNMVKNVAIIQELNGNISKVASIYSDLSVNF 121

Query: 121 SGSVRQQPQGGGGKGSCKGGNGNNGR 140
           +G V Q  Q GG   S     G+NGR
Sbjct: 122 TGVVGQHRQQGGNSKS----GGSNGR 137

[Close]

BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.700e-18
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1

		  
Query: 26  GNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNM 85
           G  +RR N  +E   +   +P  W     +F +VQ+VLDRNR LIQQ N+NHQSR+ DNM
Sbjct: 5   GETKRRRNVAEE--AEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNM 64

Query: 86  KKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 130
            KNVA+IQELNGNI+KV ++YSDL+ +FS        G  G G+
Sbjct: 65  SKNVALIQELNGNISKVVNMYSDLNTSFSSGFHGGKNGHDGGGA 106

[Close]

BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-15
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1

		  
Query: 47  QAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIY 106
           + W+  ++ F   Q  LD+NR LIQ+ NENH SRIPDN+ +NV +I E+NGNI++V  IY
Sbjct: 36  EVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIY 95

Query: 107 SDLSANFSGSVRQQ 121
           SDLS NF+    Q+
Sbjct: 96  SDLSLNFAKKFDQR 109

[Close]

BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.200e-14
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1

		  
Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD NR+LI + N+NH+S+IPDN+ +NV +I+ELN N+ +VA +Y DLS 
Sbjct: 24  FEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSN 83

Query: 112 NFSGSVRQQPQGGGGKG 129
           NFS S+    +G   +G
Sbjct: 84  NFSKSMEASSEGDSSEG 100

[Close]

BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.900e-11
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1

		  
Query: 51  AFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLS 110
           +F  SF +VQ +LD+NR+LI + N+NH+S+ PDN+ +NV +I+ELN NI +VAS+Y DLS
Sbjct: 22  SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81

Query: 111 ANFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGG 144
            +F+ SV    +G         G  N  R   G
Sbjct: 82  HSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]

BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.700e-9
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1

		  
Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD+NR+LI + N+NH+S+  D++ +NV +I+ELN NI  VAS+Y DLS 
Sbjct: 27  FQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSH 86

Query: 112 NFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGGG 145
           +F+ SV    +G         G  NN +R   G
Sbjct: 87  SFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

[Close]

BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT2G40080.1 (Protein of unknown function (DUF1313))

HSP 1 Score: 91.3 bits (225), Expect = 5.400e-19
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1

		  
Query: 26  GNRRRRTNNMDEFSGDGCGNPQAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNM 85
           G  +RR N  +E   +   +P  W     +F +VQ+VLDRNR LIQQ N+NHQSR+ DNM
Sbjct: 5   GETKRRRNVAEE--AEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNM 64

Query: 86  KKNVAIIQELNGNITKVASIYSDLSANFSGSVRQQPQGGGGKGS 130
            KNVA+IQELNGNI+KV ++YSDL+ +FS        G  G G+
Sbjct: 65  SKNVALIQELNGNISKVVNMYSDLNTSFSSGFHGGKNGHDGGGA 106

[Close]

BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT2G29950.1 (ELF4-like 1)

HSP 1 Score: 84.0 bits (206), Expect = 8.700e-17
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1

		  
Query: 47  QAWNAFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIY 106
           + W+  ++ F   Q  LD+NR LIQ+ NENH SRIPDN+ +NV +I E+NGNI++V  IY
Sbjct: 36  EVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIY 95

Query: 107 SDLSANFSGSVRQQ 121
           SDLS NF+    Q+
Sbjct: 96  SDLSLNFAKKFDQR 109

[Close]

BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT2G06255.1 (ELF4-like 3)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1

		  
Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD NR+LI + N+NH+S+IPDN+ +NV +I+ELN N+ +VA +Y DLS 
Sbjct: 24  FEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSN 83

Query: 112 NFSGSVRQQPQGGGGKG 129
           NFS S+    +G   +G
Sbjct: 84  NFSKSMEASSEGDSSEG 100

[Close]

BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT1G17455.1 (ELF4-like 4)

HSP 1 Score: 69.3 bits (168), Expect = 2.200e-12
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1

		  
Query: 51  AFADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLS 110
           +F  SF +VQ +LD+NR+LI + N+NH+S+ PDN+ +NV +I+ELN NI +VAS+Y DLS
Sbjct: 22  SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81

Query: 111 ANFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGG 144
            +F+ SV    +G         G  N  R   G
Sbjct: 82  HSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]

BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Match: AT1G72630.1 (ELF4-like 2)

HSP 1 Score: 62.8 bits (151), Expect = 2.100e-10
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1

		  
Query: 52  FADSFSEVQTVLDRNRMLIQQANENHQSRIPDNMKKNVAIIQELNGNITKVASIYSDLSA 111
           F  SF +VQ +LD+NR+LI + N+NH+S+  D++ +NV +I+ELN NI  VAS+Y DLS 
Sbjct: 27  FQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSH 86

Query: 112 NFSGSVRQQPQGGGGKGSCKGGNGNNGRRNGGG 145
           +F+ SV    +G         G  NN +R   G
Sbjct: 87  SFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

The following BLAST results are available for this feature:

BLAST of Spo11195.1 vs. NCBI nr
BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
BLAST of Spo11195.1 vs. TAIR (Arabidopsis)

BLAST of Spo11195.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902227640\|gb\|KNA20765.1\|	5.2e-72	100.	hypothetical protein SOVF_0493...	[more]
gi\|731315048\|ref\|XP_010689700.1\|	1.2e-49	79.4	PREDICTED: protein EARLY FLOWE...	[more]
gi\|902227639\|gb\|KNA20764.1\|	4.4e-47	76.5	hypothetical protein SOVF_0493...	[more]
gi\|731315044\|ref\|XP_010689678.1\|	7.6e-47	76.4	PREDICTED: protein EARLY FLOWE...	[more]
gi\|870867338\|gb\|KMT18207.1\|	1.9e-45	77.2	hypothetical protein BVRB_2g02...	[more]

BLAST of Spo11195.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RMM3_SPIOL	3.6e-72	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D1Q2_BETVU	8.7e-50	79.4	Uncharacterized protein OS=Bet...	[more]
A0A0K9RPE7_SPIOL	3.1e-47	76.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8CX73_BETVU	1.3e-45	77.2	Uncharacterized protein OS=Bet...	[more]
Q6UEI6_MESCR	1.0e-34	65.7	Early flowering 4 OS=Mesembrya...	[more]

BLAST of Spo11195.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
ELF4_ARATH	9.7e-18	50.0	Protein EARLY FLOWERING 4 OS=A...	[more]
EF4L1_ARATH	1.5e-15	51.3	Protein ELF4-LIKE 1 OS=Arabido...	[more]
EF4L3_ARATH	2.2e-14	49.3	Protein ELF4-LIKE 3 OS=Arabido...	[more]
EF4L4_ARATH	3.9e-11	44.0	Protein ELF4-LIKE 4 OS=Arabido...	[more]
EF4L2_ARATH	3.7e-9	43.0	Protein ELF4-LIKE 2 OS=Arabido...	[more]

BLAST of Spo11195.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT2G40080.1	5.4e-19	50.0	Protein of unknown function (D...	[more]
AT2G29950.1	8.7e-17	51.3	ELF4-like 1	[more]
AT2G06255.1	1.3e-15	49.3	ELF4-like 3	[more]
AT1G17455.1	2.2e-12	44.0	ELF4-like 4	[more]
AT1G72630.1	2.1e-10	43.0	ELF4-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein of unknown function DUF1313	PFAM	PF07011	DUF1313	coord: 45..122 score: 1.3
None	No IPR available	PANTHER	PTHR33469	FAMILY NOT NAMED	coord: 44..120 score: 2.0
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 44..120 score: 2.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0009408	response to heat
biological_process	GO:0006457	protein folding
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0006857	oligopeptide transport
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0006107	oxaloacetate metabolic process
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0006265	DNA topological change
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0006534	cysteine metabolic process
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0006103	2-oxoglutarate metabolic process
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0009821	alkaloid biosynthetic process
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0015976	carbon utilization
biological_process	GO:0006396	RNA processing
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008152	metabolic process
biological_process	GO:0051026	chiasma assembly
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0009845	seed germination
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
biological_process	GO:0009846	pollen germination
biological_process	GO:0006531	aspartate metabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0016020	membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0000932	P-body
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005657	replication fork
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005694	chromosome
cellular_component	GO:0017177	glucosidase II complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0004558	alpha-1,4-glucosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0032450	maltose alpha-glucosidase activity
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function	GO:0016817	hydrolase activity, acting on acid anhydrides

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10269	0.90	Barchart \| Table
Spo15731	0.84	Barchart \| Table
Spo00341	0.83	Barchart \| Table
Spo08124	0.83	Barchart \| Table
Spo06002	0.82	Barchart \| Table
Spo10165	0.81	Barchart \| Table
Spo22291	0.79	Barchart \| Table
Spo19748	0.78	Barchart \| Table
Spo09233	0.77	Barchart \| Table
Spo25748	0.77	Barchart \| Table
Spo24931	0.77	Barchart \| Table
Spo03527	0.75	Barchart \| Table
Spo02239	0.75	Barchart \| Table
Spo01314	0.74	Barchart \| Table
Spo03739	0.74	Barchart \| Table
Spo15007	0.74	Barchart \| Table
Spo08765	0.73	Barchart \| Table
Spo09573	0.73	Barchart \| Table
Spo16460	0.73	Barchart \| Table
Spo24503	0.72	Barchart \| Table
Spo13780	0.72	Barchart \| Table
Spo01806	0.72	Barchart \| Table
Spo20053	0.72	Barchart \| Table
Spo00375	0.72	Barchart \| Table
Spo22023	0.72	Barchart \| Table
Spo20052	0.71	Barchart \| Table
Spo25361	0.71	Barchart \| Table
Spo18840	0.71	Barchart \| Table
Spo11180	0.71	Barchart \| Table
Spo16857	0.71	Barchart \| Table
Spo05007	0.70	Barchart \| Table
Spo06520	0.70	Barchart \| Table
Spo01110	0.70	Barchart \| Table
Spo18907	0.70	Barchart \| Table
Spo19195	0.70	Barchart \| Table
Spo20326	0.69	Barchart \| Table
Spo16873	0.69	Barchart \| Table
Spo24785	0.69	Barchart \| Table
Spo24573	0.69	Barchart \| Table
Spo14380	0.69	Barchart \| Table
Spo13621	0.69	Barchart \| Table
Spo10981	0.68	Barchart \| Table
Spo02477	0.68	Barchart \| Table
Spo03105	0.68	Barchart \| Table
Spo18096	0.68	Barchart \| Table
Spo19374	0.68	Barchart \| Table
Spo21764	0.68	Barchart \| Table
Spo23713	0.68	Barchart \| Table
Spo10553	0.67	Barchart \| Table
Spo03221	0.67	Barchart \| Table
Spo23416	0.67	Barchart \| Table
Spo16367	0.67	Barchart \| Table
Spo21289	0.66	Barchart \| Table
Spo02518	0.66	Barchart \| Table
Spo18505	0.66	Barchart \| Table
Spo15961	0.66	Barchart \| Table
Spo15615	0.66	Barchart \| Table
Spo12153	0.66	Barchart \| Table
Spo23690	0.66	Barchart \| Table
Spo00264	0.66	Barchart \| Table
Spo07962	0.66	Barchart \| Table
Spo04430	0.66	Barchart \| Table
Spo18040	0.66	Barchart \| Table
Spo03305	0.66	Barchart \| Table
Spo22675	0.66	Barchart \| Table
Spo23292	0.66	Barchart \| Table
Spo00263	0.65	Barchart \| Table
Spo14842	0.65	Barchart \| Table
Spo17913	0.65	Barchart \| Table
Spo22712	0.65	Barchart \| Table
Spo17621	0.65	Barchart \| Table
Spo17513	0.65	Barchart \| Table