Spo11238 (gene)

Overview
NameSpo11238
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPeptide deformylase 1B
LocationSpoScf_05286 : 3389 .. 6886 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCTGAACCCAAGCCACTTAATGTTTAGCATCTGTTCAAAACACAAGCTATAAGTCCCACTCATACAGTCATACTCCGTAACACATTTTAATACTCACTCCGTACTTACTCCGTAACACACAAGCTAGCAAGCAAAGAATGCATACCTCAAGCAGACCTCTGCACCATCATCCATTTCAATGGAATCAACACCCCTCTCTCTCCTCCCCTTCATCGCGTCTCTCCTTCCCCAATTATTCCGTCTCTACCCTTCTGATTTCTTCTAACCCACTACCCACACTTCACTCCGCCGCCGTCAAAACCACCGCCACCAAAGTGCTTGCCATGGCAAAAAGAAGTTTCCCCACCAAAGACAATGATTTTGCTTCAAGTAAGCTTGAATTTCCCACTTCAATTTGTTATCTTTTGTGGGTTTTCTTCCCCTTTTTAGTACTAATTATTTTGAACTGTCATTTTTGGTAATTAATTTGTTACTTTTTGTGGGCTTTCAAGGTGCTGATTTGCAGTTTGAGTCACCATTGAAAATAGTGGAATATCCAGACCCAAGGCTTAGAGCCAAGAACAAGCCAATTGATAAGTTTGATGATAATTTGAAGAAGTTGGTTGATGAAATGTTTGATGTTATGTACAAGTAAGTTTTTTTGGATGAATTGCTATAATTTGTGCTTGTTAAATTATGGTAATATCTATAAGTTTTTGATGAATTTCATATGAAATTTGATTATTTGGCTTGATTGTTTGTATTATTCAGGCTGCCTATTGATTTATGATATAAAATCTAGTGATGCAGATAATAGTTATTGTTTAGAATTTGACACTTTAGTATAATTTAACCAGTAAAAGATTGATTGATGAAAATCAATAGTATTAGTGATGTTTGTGTCTTTAGGTCTGAAATACCTAATAACCTAGAGGTAGAGGTCTGTTTAGAATCTTAAATTAGGTGTCATGAGTTATTCTGAGAGTTTTCAATGTGATAAGTTTCTGAAATGGCAAAATGTAGTCTTTATGAAGATTCAATACAAGTATTGGAAGATACAATGCCCTTTGAGATAGAGTTTGCGCTTTGCTTGGGGTAGTTCATTTAAAAATTTATTTAGATGTATTGGTTTTTGGTGTTCCCTTAGAGCATGTTTATTAAACACCTTGGTTTGGTGTTTAGGAGAGAGAAGTGAATAAAAAGTAATAAAATAGGTAGAGAGATGAGTGAAAAAGGAAGAGAGAATGAAATCAAAGAAAAATTGGTGTTCATGAACACCAAGTGGAAAACCAATATCTTGATTGGAGAGTTTGCCATGTGGCATATGGGGACCAAAAATATTTATTATTTTTTTCTTTTAATTGGAAAATGATTTCATTGACCTAAATTTGTTTTGTTAAATAAATGTAGGTGAGTTTGGATGATGTAGGAAATAGATGATATTTTTGGTGTTTGATAAATGTTGTTAAATGTTGTTAGTGTACGGTTTGGTGTTGGGGAGAGAGAAAAGTTAAAATATTATATTTTATTAGGTTAAAGACCAAAATATTGGTGTTTGATAAACATGTTCTTAGTATGGACTATGGAGTGAAGAACTTGCTATTATGTAGCTTGAACTTGCGAACTAATATGTTGGATATGGGTGCATCTCGAGAGGAGATGGCTTATATTGGGGTTCGTCATAGGTCTTTTGTATGACTTAATAACCCAGATGTACGTGTGTCGGATATACTTCTTACACTCTTACTCTTACTACTCTTATACTACAAGGTTGGGTTGGGTGGAAAGAGGACCATAAGGATAACAGGATGCAGGACATAGTCTGCTATCATAGACATGGACATGTGATAATCAAATGTACTTCGTATTTGTTAAACTCAATAGTAGAACCTGACAATACCAAATCCGGGGGGAGTGGTAAAATTTGATTTGTTACATTTCATTTATAGATGGACTAATTTTTTAATTGCTGATTGAGAGATGATTATATTGCTGTCTAGAGCTCCAACCTTTTGCGTCTCATGGGAGTTACTACTTTGCCACTGCTAATATATGATGATTAGAGAAAAATCAGGAGGCACAATATAATCCTTCATGACTTCTATTTCACCACCAGTGTATGCTGCCATTTAACTTGTGATAGAACTTGCAAAATATTTTTCTTAGGAGGTGAGCAATAATTCTAGGTCTTGAATTTTATTGACAGGGTTGTGAACAATACTTGTTGGCTTCGTTTTCCGCAGAACTGAGGGGATTGGACTCGCAGCTCCTCAAGTAGGCATTAATGTCCAGCTTATGGTATTTAATCCTGTTGGTGAACGCGGTGAGGGGGAAGAAATTGTTCTTATAAATCCAAGAGTGAGCAAGCATTCGCAAAAGACGACACTTTTTAATGAAGGCTGTTTGTCATTTCCTGGACTATACGCTGACGTACAGGTACTTTCTACAACCTTAGATGACAACTGTTCTGCTATATGCTAGTGATGCATTTGCGGCTTACATTGTTTCTTGTGAAGGATCGAATGTAATTGAGTGTGTTAAATCACGCATTAAAATTGCTGATGTGCTGTGGGTCAATGCTTATAAATATAGGAGTGTTAGGCCATGGTGTATAGGCATGTTAATTGGATGATTAAATTGGAATTTACCAAGTCAATATGCAATTTAATGTGTTTTCGAGTCAGAAATTGATGTCCAAATCCGATCCAAACTTATCGCAAGTTTACTCCAACTCCAACCTAATGAAAATATATTTTCTTAAGATCCAAGATAGAGAATGGAAAGTAAGTTGGAGTTATGGAGACAAACTTTGGAATCTCGGGGTTTTAGGCTGAGTAGAAACAAGACGGAATATATGGAGTATAAGTTTAGTGGAGTCCAAGATAGAGAGACAGGGGAGATTACCTTAGATGGGAAAATTGTCCAAGGCTCTGAAACGTTCCGTTATTTAGGATCTATTATCCAAAATGATGGAGACTTGGATGGCGATGTGGCCCATAGAATTAAAGCAGGTTGGTTGAAGTGGAAAGGTGACACGGGGTTCCTAAGTGATTCAGGCATGCCCCAAAGATTGAAGGAAAAGTTTTACCGCACGGCAATTCGACCGGCTTTGTTATAAGGCACAGTATGCTGGGCAGTGAAACATTGTCACGTGTACAAGATGAATGTGGCGGAGATGCGCATGTTACGTTGGATGTGTGGGCATACAAGAAAGGATCGTTTGAGGAATGAGATTATTAGGAAGAAAGTAGGGGTTGCACCGATTGAGTTTAAGATGATGGAAAATCGTTTAAGATGGTTTGGACATGTAAGCAGAAGATCAAGTGATGCCCCGGTTAGGAGGATAGAAGGGTGGCAAAGTGATAGAACTGCAAGGGGTAGGGGAAGACCTAAGAAAACTTGGAGGAAGGTGATTGAATTGAGCACGATATGAGCTTTCTTGGGATTGAGGAAAATATGGCGTTGGATAGGACAGTGTAGAGGGAGAGAATATACATTGATGACTTCAGTTGATTT

mRNA sequence

CAACCTGAACCCAAGCCACTTAATGTTTAGCATCTGTTCAAAACACAAGCTATAAGTCCCACTCATACAGTCATACTCCGTAACACATTTTAATACTCACTCCGTACTTACTCCGTAACACACAAGCTAGCAAGCAAAGAATGCATACCTCAAGCAGACCTCTGCACCATCATCCATTTCAATGGAATCAACACCCCTCTCTCTCCTCCCCTTCATCGCGTCTCTCCTTCCCCAATTATTCCGTCTCTACCCTTCTGATTTCTTCTAACCCACTACCCACACTTCACTCCGCCGCCGTCAAAACCACCGCCACCAAAGTGCTTGCCATGGCAAAAAGAAGTTTCCCCACCAAAGACAATGATTTTGCTTCAAGTGCTGATTTGCAGTTTGAGTCACCATTGAAAATAGTGGAATATCCAGACCCAAGGCTTAGAGCCAAGAACAAGCCAATTGATAAGTTTGATGATAATTTGAAGAAGTTGGTTGATGAAATGTTTGATGTTATGTACAAAACTGAGGGGATTGGACTCGCAGCTCCTCAAGTAGGCATTAATGTCCAGCTTATGGTATTTAATCCTGTTGGTGAACGCGGTGAGGGGGAAGAAATTGTTCTTATAAATCCAAGAGTGAGCAAGCATTCGCAAAAGACGACACTTTTTAATGAAGGCTGTTTGTCATTTCCTGGACTATACGCTGACGTACAGGTACTTTCTACAACCTTAGATGACAACTGTTCTGCTATATGCTAGTGATGCATTTGCGGCTTACATTGTTTCTTGTGAAGGATCGAATGTAATTGAGTGTGTTAAATCACGCATTAAAATTGCTGATGTGCTGTGGGTCAATGCTTATAAATATAGGAGTGTTAGGCCATGGTGTATAGGCATGTTAATTGGATGATTAAATTGGAATTTACCAAGTCAATATGCAATTTAATGTGTTTTCGAGTCAGAAATTGATGTCCAAATCCGATCCAAACTTATCGCAAGTTTACTCCAACTCCAACCTAATGAAAATATATTTTCTTAAGATCCAAGATAGAGAATGGAAAGTAAGTTGGAGTTATGGAGACAAACTTTGGAATCTCGGGGTTTTAGGCTGAGTAGAAACAAGACGGAATATATGGAGTATAAGTTTAGTGGAGTCCAAGATAGAGAGACAGGGGAGATTACCTTAGATGGGAAAATTGTCCAAGGCTCTGAAACGTTCCGTTATTTAGGATCTATTATCCAAAATGATGGAGACTTGGATGGCGATGTGGCCCATAGAATTAAAGCAGGTTGGTTGAAGTGGAAAGGTGACACGGGGTTCCTAAGTGATTCAGGCATGCCCCAAAGATTGAAGGAAAAGTTTTACCGCACGGCAATTCGACCGGCTTTGTTATAAGGCACAGTATGCTGGGCAGTGAAACATTGTCACGTGTACAAGATGAATGTGGCGGAGATGCGCATGTTACGTTGGATGTGTGGGCATACAAGAAAGGATCGTTTGAGGAATGAGATTATTAGGAAGAAAGTAGGGGTTGCACCGATTGAGTTTAAGATGATGGAAAATCGTTTAAGATGGTTTGGACATGTAAGCAGAAGATCAAGTGATGCCCCGGTTAGGAGGATAGAAGGGTGGCAAAGTGATAGAACTGCAAGGGGTAGGGGAAGACCTAAGAAAACTTGGAGGAAGGTGATTGAATTGAGCACGATATGAGCTTTCTTGGGATTGAGGAAAATATGGCGTTGGATAGGACAGTGTAGAGGGAGAGAATATACATTGATGACTTCAGTTGATTT

Coding sequence (CDS)

ATGCATACCTCAAGCAGACCTCTGCACCATCATCCATTTCAATGGAATCAACACCCCTCTCTCTCCTCCCCTTCATCGCGTCTCTCCTTCCCCAATTATTCCGTCTCTACCCTTCTGATTTCTTCTAACCCACTACCCACACTTCACTCCGCCGCCGTCAAAACCACCGCCACCAAAGTGCTTGCCATGGCAAAAAGAAGTTTCCCCACCAAAGACAATGATTTTGCTTCAAGTGCTGATTTGCAGTTTGAGTCACCATTGAAAATAGTGGAATATCCAGACCCAAGGCTTAGAGCCAAGAACAAGCCAATTGATAAGTTTGATGATAATTTGAAGAAGTTGGTTGATGAAATGTTTGATGTTATGTACAAAACTGAGGGGATTGGACTCGCAGCTCCTCAAGTAGGCATTAATGTCCAGCTTATGGTATTTAATCCTGTTGGTGAACGCGGTGAGGGGGAAGAAATTGTTCTTATAAATCCAAGAGTGAGCAAGCATTCGCAAAAGACGACACTTTTTAATGAAGGCTGTTTGTCATTTCCTGGACTATACGCTGACGTACAGGTACTTTCTACAACCTTAGATGACAACTGTTCTGCTATATGCTAG

Protein sequence

MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKVLAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQVLSTTLDDNCSAIC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11238.1Spo11238.1mRNA


Homology
[Close]
BLAST of Spo11238.1 vs. NCBI nr
Match: gi|902165624|gb|KNA07129.1| (hypothetical protein SOVF_174700, partial [Spinacia oleracea])

HSP 1 Score: 375.9 bits (964), Expect = 4.300e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 

		  

Query: 1   MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKV 60
           MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKV
Sbjct: 1   MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKV 60

Query: 61  LAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFD 120
           LAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFD
Sbjct: 61  LAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFD 120

Query: 121 VMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSF 180
           VMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSF
Sbjct: 121 VMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSF 180

Query: 181 PGLYADVQ 189
           PGLYADVQ
Sbjct: 181 PGLYADVQ 188
[Close]
BLAST of Spo11238.1 vs. NCBI nr
Match: gi|731328519|ref|XP_010675096.1| (PREDICTED: peptide deformylase 1B, chloroplastic/mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.2 bits (635), Expect = 6.100e-63
Identity = 136/180 (75.56%), Postives = 144/180 (80.00%), Query Frame = 1 

		  

Query: 10  HHPFQWNQHPSLSSPSSRLSFPNYSVSTLLI-SSNPLPTLHSAAVKTTATKVLAMAKRSF 69
           HHP QW Q  SLSS  + LSFPN   S LL  S+NP   LHS     T  KV AM K + 
Sbjct: 29  HHPLQWTQLYSLSSRFALLSFPNSPFSPLLRPSNNPSLKLHSI----TNPKVHAMGKTTL 88

Query: 70  PTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGI 129
             K+ DFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLV EMFDVMYKT+GI
Sbjct: 89  SPKETDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVSEMFDVMYKTDGI 148

Query: 130 GLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           GL+APQVGINVQLMVFNPVGERGEGEEIVLINP VSK+S KT  F EGCLSFPGLYA+VQ
Sbjct: 149 GLSAPQVGINVQLMVFNPVGERGEGEEIVLINPSVSKYSLKTRDFEEGCLSFPGLYANVQ 204
[Close]
BLAST of Spo11238.1 vs. NCBI nr
Match: gi|870862212|gb|KMT13431.1| (hypothetical protein BVRB_4g083860 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.2 bits (635), Expect = 6.100e-63
Identity = 136/180 (75.56%), Postives = 144/180 (80.00%), Query Frame = 1 

		  

Query: 10  HHPFQWNQHPSLSSPSSRLSFPNYSVSTLLI-SSNPLPTLHSAAVKTTATKVLAMAKRSF 69
           HHP QW Q  SLSS  + LSFPN   S LL  S+NP   LHS     T  KV AM K + 
Sbjct: 8   HHPLQWTQLYSLSSRFALLSFPNSPFSPLLRPSNNPSLKLHSI----TNPKVHAMGKTTL 67

Query: 70  PTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGI 129
             K+ DFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLV EMFDVMYKT+GI
Sbjct: 68  SPKETDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVSEMFDVMYKTDGI 127

Query: 130 GLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           GL+APQVGINVQLMVFNPVGERGEGEEIVLINP VSK+S KT  F EGCLSFPGLYA+VQ
Sbjct: 128 GLSAPQVGINVQLMVFNPVGERGEGEEIVLINPSVSKYSLKTRDFEEGCLSFPGLYANVQ 183
[Close]
BLAST of Spo11238.1 vs. NCBI nr
Match: gi|470141254|ref|XP_004306350.1| (PREDICTED: peptide deformylase 1B, chloroplastic/mitochondrial [Fragaria vesca subsp. vesca])

HSP 1 Score: 215.7 bits (548), Expect = 7.400e-53
Identity = 102/131 (77.86%), Postives = 119/131 (90.84%), Query Frame = 1 

		  

Query: 58  TKVLAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDE 117
           T V A AKR F  K++  AS+AD++FE+PL+IVEYPDP LRAKNK +D FDDNLKKLV+E
Sbjct: 52  TAVRAQAKRGFSLKEDQVASAADVEFETPLEIVEYPDPILRAKNKRLDTFDDNLKKLVEE 111

Query: 118 MFDVMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGC 177
           MFD+MY+T+GIGL+APQVGINVQLMVFNPVGERGEGEEIVL+NPRVS++SQKT LFNEGC
Sbjct: 112 MFDIMYRTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSRYSQKTRLFNEGC 171

Query: 178 LSFPGLYADVQ 189
           LSFPG+YADVQ
Sbjct: 172 LSFPGIYADVQ 182
[Close]
BLAST of Spo11238.1 vs. NCBI nr
Match: gi|702465302|ref|XP_010029153.1| (PREDICTED: peptide deformylase 1B, chloroplastic/mitochondrial [Eucalyptus grandis])

HSP 1 Score: 215.3 bits (547), Expect = 9.700e-53
Identity = 107/148 (72.30%), Postives = 125/148 (84.46%), Query Frame = 1 

		  

Query: 42  SNPLPTLHSAAVKTTATKVL-AMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAK 101
           S+ LP+  SAA + + +  L A AKR F +KD+DFAS+ DLQFE+PLKIVEYPDP LRA 
Sbjct: 41  SSALPSAPSAARRASPSPPLRAQAKRGFSSKDDDFASADDLQFEAPLKIVEYPDPGLRAN 100

Query: 102 NKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLIN 161
           NK I  FDDNL+KL DEMFDVMYKT+GIGL+APQVGINVQLMVFNP+GERGEGEEIVL+N
Sbjct: 101 NKRIGTFDDNLRKLADEMFDVMYKTDGIGLSAPQVGINVQLMVFNPIGERGEGEEIVLVN 160

Query: 162 PRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           PR+ K+S+K   FNEGCLSFPG+YADVQ
Sbjct: 161 PRIIKYSKKMVSFNEGCLSFPGIYADVQ 188
[Close]
BLAST of Spo11238.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIR0_SPIOL (Peptide deformylase (Fragment) OS=Spinacia oleracea GN=SOVF_174700 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.000e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 

		  

Query: 1   MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKV 60
           MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKV
Sbjct: 1   MHTSSRPLHHHPFQWNQHPSLSSPSSRLSFPNYSVSTLLISSNPLPTLHSAAVKTTATKV 60

Query: 61  LAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFD 120
           LAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFD
Sbjct: 61  LAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFD 120

Query: 121 VMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSF 180
           VMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSF
Sbjct: 121 VMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSF 180

Query: 181 PGLYADVQ 189
           PGLYADVQ
Sbjct: 181 PGLYADVQ 188
[Close]
BLAST of Spo11238.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FC73_BETVU (Peptide deformylase OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083860 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.200e-63
Identity = 136/180 (75.56%), Postives = 144/180 (80.00%), Query Frame = 1 

		  

Query: 10  HHPFQWNQHPSLSSPSSRLSFPNYSVSTLLI-SSNPLPTLHSAAVKTTATKVLAMAKRSF 69
           HHP QW Q  SLSS  + LSFPN   S LL  S+NP   LHS     T  KV AM K + 
Sbjct: 8   HHPLQWTQLYSLSSRFALLSFPNSPFSPLLRPSNNPSLKLHSI----TNPKVHAMGKTTL 67

Query: 70  PTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGI 129
             K+ DFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLV EMFDVMYKT+GI
Sbjct: 68  SPKETDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVSEMFDVMYKTDGI 127

Query: 130 GLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           GL+APQVGINVQLMVFNPVGERGEGEEIVLINP VSK+S KT  F EGCLSFPGLYA+VQ
Sbjct: 128 GLSAPQVGINVQLMVFNPVGERGEGEEIVLINPSVSKYSLKTRDFEEGCLSFPGLYANVQ 183
[Close]
BLAST of Spo11238.1 vs. UniProtKB/TrEMBL
Match: A0A059ARG9_EUCGR (Peptide deformylase OS=Eucalyptus grandis GN=EUGRSUZ_I01778 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.800e-53
Identity = 107/148 (72.30%), Postives = 125/148 (84.46%), Query Frame = 1 

		  

Query: 42  SNPLPTLHSAAVKTTATKVL-AMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAK 101
           S+ LP+  SAA + + +  L A AKR F +KD+DFAS+ DLQFE+PLKIVEYPDP LRA 
Sbjct: 41  SSALPSAPSAARRASPSPPLRAQAKRGFSSKDDDFASADDLQFEAPLKIVEYPDPGLRAN 100

Query: 102 NKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLIN 161
           NK I  FDDNL+KL DEMFDVMYKT+GIGL+APQVGINVQLMVFNP+GERGEGEEIVL+N
Sbjct: 101 NKRIGTFDDNLRKLADEMFDVMYKTDGIGLSAPQVGINVQLMVFNPIGERGEGEEIVLVN 160

Query: 162 PRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           PR+ K+S+K   FNEGCLSFPG+YADVQ
Sbjct: 161 PRIIKYSKKMVSFNEGCLSFPGIYADVQ 188
[Close]
BLAST of Spo11238.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LG66_CUCSA (Peptide deformylase OS=Cucumis sativus GN=Csa_3G837630 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.400e-52
Identity = 103/140 (73.57%), Postives = 119/140 (85.00%), Query Frame = 1 

		  

Query: 49  HSAAVKTTATKVLAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFD 108
           HS+  K  +T V A AKR F  K++D ASS DL+FE+PLKIVEYPDP LRAKNK I  FD
Sbjct: 44  HSSKFKAPSTLVYAQAKRGFSAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFD 103

Query: 109 DNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQ 168
           DNLKKLV EMFDVMYKT+GIGL+APQVG+NVQLMVFN VGERGEGEEIVL+NP+V ++S+
Sbjct: 104 DNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSK 163

Query: 169 KTTLFNEGCLSFPGLYADVQ 189
           KT LFNEGCLSFP +YADV+
Sbjct: 164 KTVLFNEGCLSFPMIYADVE 183
[Close]
BLAST of Spo11238.1 vs. UniProtKB/TrEMBL
Match: M5WT54_PRUPE (Peptide deformylase OS=Prunus persica GN=PRUPE_ppa009947mg PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.500e-52
Identity = 102/141 (72.34%), Postives = 121/141 (85.82%), Query Frame = 1 

		  

Query: 47  TLHSAAVKTTATKVLAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDK 106
           T+   +    +T V A AKR F  K+++ A++AD++FE+PLKIVEYPDP LRAKNK ID 
Sbjct: 39  TVRLVSTMNRSTPVHAQAKRGFSVKEDEVATAADVEFETPLKIVEYPDPILRAKNKRIDS 98

Query: 107 FDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKH 166
           FD+NLK LVDEMFD+MYKT+GIGL+APQVGINVQLMVFNPVGERGEGEEIVL+NPRVS++
Sbjct: 99  FDENLKILVDEMFDIMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSRY 158

Query: 167 SQKTTLFNEGCLSFPGLYADV 188
           SQKT  FNEGCLSFPG+YADV
Sbjct: 159 SQKTRPFNEGCLSFPGIYADV 179
[Close]
BLAST of Spo11238.1 vs. ExPASy Swiss-Prot
Match: DEF1B_ARATH (Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PDF1B PE=1 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 8.800e-46
Identity = 86/117 (73.50%), Postives = 102/117 (87.18%), Query Frame = 1 

		  

Query: 71  KDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGL 130
           KD+  AS+ D+QFE+PLKIVEYPDP LRAKNK ID FD+NLK LVD MFDVMYKT+GIGL
Sbjct: 65  KDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGL 124

Query: 131 AAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADV 188
           +APQVG+NVQLMVFNP GE GEG+EIVL+NP++ K+S K   F+EGCLSFPG+YA+V
Sbjct: 125 SAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEV 181
[Close]
BLAST of Spo11238.1 vs. ExPASy Swiss-Prot
Match: DEF1B_ORYSJ (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica GN=PDF1B PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.400e-45
Identity = 92/157 (58.60%), Postives = 119/157 (75.80%), Query Frame = 1 

		  

Query: 39  LISSNPLPTLHSAAVKTTATKVLAMAKRSF--------PTKDNDFASSADLQFESPLKIV 98
           L++++P   L  + + + A    A A+R F        P +D DFA++ADLQFE PLK+V
Sbjct: 23  LLAAHPR-ALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVV 82

Query: 99  EYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNPVGER 158
           +YPDP LRA+NK I+ FDDNL+ L DEMFDVMYKT+GIGL+APQVG+NVQLMVFNP G +
Sbjct: 83  KYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVK 142

Query: 159 GEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADV 188
           GEGEEIVL+NP V K S++  ++ EGCLSFPG+YA+V
Sbjct: 143 GEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANV 178
[Close]
BLAST of Spo11238.1 vs. ExPASy Swiss-Prot
Match: DEF1B_SOLLC (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum GN=PDF1B PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.300e-44
Identity = 103/171 (60.23%), Postives = 121/171 (70.76%), Query Frame = 1 

		  

Query: 22  SSPSS-RLSFPNYSVSTLLI---SSNPLPTLHSAAVKTTATKVLAMAKRSFPTKDNDFAS 81
           SSPS    S   Y  +  L    SSN  P L   AV   A +VL     S  TK ++ A+
Sbjct: 26  SSPSPISYSLHRYKSANCLFFSASSNKPPKL---AVYAQARRVL-----SSKTKGDEIAT 85

Query: 82  SADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGI 141
            ADL F  PLKIVEYPDP LRAKNK ID FD NLKKLVDEMFD+MYKT+GIGL+APQVG+
Sbjct: 86  PADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGM 145

Query: 142 NVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           NVQLMVFN  GERGEGEEIVL+NPRVS++S++   + EGCLSFP ++ DV+
Sbjct: 146 NVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVK 188
[Close]
BLAST of Spo11238.1 vs. ExPASy Swiss-Prot
Match: DEF_ZYMMO (Peptide deformylase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=def PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.500e-21
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 1 

		  

Query: 87  LKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFN- 146
           L I+E PDPRLR K+  ++ FDDNL++L+D+MF+ MYK  GIGLAA QVG+  +L+V + 
Sbjct: 4   LPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLVIDL 63

Query: 147 ---PVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
                G   +   +V INP ++   ++  L+NEGCLS P  YA+V+
Sbjct: 64  QQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVR 109
[Close]
BLAST of Spo11238.1 vs. ExPASy Swiss-Prot
Match: DEF_RHOBA (Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) GN=def PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.500e-21
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 1 

		  

Query: 86  PLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFN 145
           PL I+ +P P LR  ++PI + D  LK + DEM D+MY+ +G+GLAA QV + +++ V N
Sbjct: 2   PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61

Query: 146 PVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
           P G+R EGE  V++NP + +     T   EGCLS PGLY  V+
Sbjct: 62  PTGKRDEGESWVILNPEIDRPKGNDTA-QEGCLSVPGLYGQVK 103
[Close]
BLAST of Spo11238.1 vs. TAIR (Arabidopsis)
Match: AT5G14660.1 (peptide deformylase 1B)

HSP 1 Score: 184.9 bits (468), Expect = 5.000e-47
Identity = 86/117 (73.50%), Postives = 102/117 (87.18%), Query Frame = 1 

		  

Query: 71  KDNDFASSADLQFESPLKIVEYPDPRLRAKNKPIDKFDDNLKKLVDEMFDVMYKTEGIGL 130
           KD+  AS+ D+QFE+PLKIVEYPDP LRAKNK ID FD+NLK LVD MFDVMYKT+GIGL
Sbjct: 65  KDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGL 124

Query: 131 AAPQVGINVQLMVFNPVGERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADV 188
           +APQVG+NVQLMVFNP GE GEG+EIVL+NP++ K+S K   F+EGCLSFPG+YA+V
Sbjct: 125 SAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEV 181
[Close]
BLAST of Spo11238.1 vs. TAIR (Arabidopsis)
Match: AT1G15390.1 (peptide deformylase 1A)

HSP 1 Score: 66.2 bits (160), Expect = 2.600e-11
Identity = 47/161 (29.19%), Postives = 78/161 (48.45%), Query Frame = 1 

		  

Query: 45  LPTLHSAAVKTTATKVLAMAKRSFPTKDNDFASSADLQFESPLKIVEYPDPRLRAKNKPI 104
           LPT  S+++ T A  +L + ++             DL      +IV   DP L  K + +
Sbjct: 53  LPTSSSSSLSTKAGWLLGLGEKK---------KKVDLP-----EIVASGDPVLHEKAREV 112

Query: 105 DKFD---DNLKKLVDEMFDVMYKTEGIGLAAPQVGINVQLMVFNP--------------V 164
           D  +   + ++K++D+M  VM    G+GLAAPQ+G+ ++++V                  
Sbjct: 113 DPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILA 172

Query: 165 GERGEGEEIVLINPRVSKHSQKTTLFNEGCLSFPGLYADVQ 189
            ER   + +V++NP + + S K  LF EGCLS  G  A V+
Sbjct: 173 QERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVE 199
The following BLAST results are available for this feature:
BLAST of Spo11238.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902165624|gb|KNA07129.1|4.3e-101100.hypothetical protein SOVF_1747... [more]
gi|731328519|ref|XP_010675096.1|6.1e-6375.5PREDICTED: peptide deformylase... [more]
gi|870862212|gb|KMT13431.1|6.1e-6375.5hypothetical protein BVRB_4g08... [more]
gi|470141254|ref|XP_004306350.1|7.4e-5377.8PREDICTED: peptide deformylase... [more]
gi|702465302|ref|XP_010029153.1|9.7e-5372.3PREDICTED: peptide deformylase... [more]
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BLAST of Spo11238.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QIR0_SPIOL3.0e-101100.Peptide deformylase (Fragment)... [more]
A0A0J8FC73_BETVU4.2e-6375.5Peptide deformylase OS=Beta vu... [more]
A0A059ARG9_EUCGR6.8e-5372.3Peptide deformylase OS=Eucalyp... [more]
A0A0A0LG66_CUCSA4.4e-5273.5Peptide deformylase OS=Cucumis... [more]
M5WT54_PRUPE7.5e-5272.3Peptide deformylase OS=Prunus ... [more]
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BLAST of Spo11238.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DEF1B_ARATH8.8e-4673.5Peptide deformylase 1B, chloro... [more]
DEF1B_ORYSJ4.4e-4558.6Peptide deformylase 1B, chloro... [more]
DEF1B_SOLLC6.3e-4460.2Peptide deformylase 1B, chloro... [more]
DEF_ZYMMO7.5e-2146.2Peptide deformylase OS=Zymomon... [more]
DEF_RHOBA7.5e-2145.6Peptide deformylase OS=Rhodopi... [more]
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BLAST of Spo11238.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G14660.15.0e-4773.5peptide deformylase 1B[more]
AT1G15390.12.6e-1129.1peptide deformylase 1A[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023635Peptide deformylasePRINTSPR01576PDEFORMYLASEcoord: 175..186
score: 5.6E-16coord: 116..145
score: 5.6
IPR023635Peptide deformylaseGENE3D3.90.45.10coord: 88..188
score: 4.3
IPR023635Peptide deformylasePANTHERPTHR10458PEPTIDE DEFORMYLASEcoord: 64..188
score: 4.0
IPR023635Peptide deformylasePFAMPF01327Pep_deformylasecoord: 87..188
score: 9.2
IPR023635Peptide deformylaseunknownSSF56420Peptide deformylasecoord: 87..187
score: 4.06
NoneNo IPR availablePANTHERPTHR10458:SF2PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIALcoord: 64..188
score: 4.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009631 cold acclimation
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0034599 cellular response to oxidative stress
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0030091 protein repair
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 plastid transcription
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006412 translation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006397 mRNA processing
cellular_component GO:0010007 magnesium chelatase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0009507 chloroplast
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0016020 membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005634 nucleus
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016851 magnesium chelatase activity
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0070191 methionine-R-sulfoxide reductase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0042586 peptide deformylase activity
molecular_function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity
molecular_function GO:0046422 violaxanthin de-epoxidase activity
RNA-Seq Expression