Spo11246 (gene) | SpinachBase

Overview


Name	Spo11246
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	NAD(P)H:plastoquinone dehydrogenase complex subunit O
Location	chr3 : 49551728 .. 49555492 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATCTGAAATCTGAAATGTACAAGTACTAAGAAAAAAGAGTGATTGAAAACTCTGTTCCTCTTTCACTCATAGTCTCATATGGCTTTATCCACAGCTCTCTCAAACCCACAAGCTTTATCTTGCTTCTCTTCTTTCCCAAAGACCACTAAAATCATCCCTTTTCGACGTCAGTTATGTGTTCGAGCTGAAGCTGATAGTTCACAGAAACTCACAGAGACCAAAACTAAAGAAAGCACCAATGACAAACCTCCCCCTAAAAAACCTCCAAAGCCTGTCTATTCAAGTGGGTATTTTTGCATATTCTTCATTTTTGTTAACTAGAAAATTAAACTTTATCTTTTCATTAATTAGCCTGCCATGTATACAGTATCATTTTCATTTAGTTTTTCTTTGATAAATAATCTTATCAGTTAGTTGATTTGGTTTCTTCTGATTGGTTTGGACAGTGAAAAAAGGTCAGATTGTAAGGGTGGAAAGGGAGAAGTACCTTGATAGTGTCAATGTGAGTGTTTTTCTCCAAGTTTAGCTTATTTCTGATTGTAAGGATTAAGGGATTAAACATGGTTTATGTTCGCAAATGATCAGTATTTGTCAGTTGGACATCCAAAGTACTACAAAGGGCTGGACTATATTTATGAAGACCGTGGAGAGGTAAATCTTTATACAGTATTTTACTACAACTTTATACTTTTGGAAAGAAGGAATTGAAGTTTCTCATAGTTAGCAACCAACATTGTAATGCAGGTCTTGGATTTACGTTTTTTTGAGACAGGAGAGTATGCACTTGTAAGTAACCAACTTTCTACTGTCATGTGCAGTGACTGATTTTTTTTTTTGAGACAATGCAGTGACTGATTTTTACTCATCATAATTGTTACAAGATTAGGAACATAAACTGATTTATTTTAGGCGCAATTTTCAGCTTCTCATTTAATCAGCTGATTCAATAGTAGATCACTTCAAATTTTGCTAAACCTGCAGGTTTCTTGGGTTGGAATCCCAACATCACCAGCTTGGCTTCCAACAGATATGCTTATTAAGGTATAACTTAATATATTACACAAATTCTACATACTGTTTACTAAGTGTTTCAACTCCTGATTGATTGTGCTTATGTGCAGTCTGATAAACTCAACTATGAAAGGATGTGATTCAGATGCTCAAGAATTATCACTTTGTTCGAGCTGAAGCTGATAGTTCTTGAGCAATCCCTTTTCTTCTGCAACTGCTTCAGGCACCAGCTGATAGTTCTTCATTTATCAATCTGTGTAGTTAACCTTTGACAAATGAACTATATTACAGCATCAAAAGGCTACAAATTTCAAGTTAAAGAGTAAATTTTCTGGTCTGTATTCTGCTAGTCTGTTCCTGCTTTGCGCTCTCAGTTACATAAAGCTGGTGCCTGAAGCAGTTGCAGAAGAAAAATAGAGTCCGCAGATTATATCCCAATCAACTTAGATGGGAAAATATTTGGAAAAAACTCGGCTCTCCAACTTTTATCAGTACAAATAAATGAATAATAGATACAACATCCGGTACACATTGTAATTCAGAAAGGAAACAGTTCCTATCTGTAAACCTCCTATCCTTTCCAAATTCTGAAGAAATTTGTACGTTACCCTGATTCTACCAATGCATTGGAGATATGTTGACTTTTTAATTTTTTTGATGAGATGGATCCTACTGGACAAGAACACAAGAACCCTGACGAATCAGCTCACCCAGATTTGCAAATCAGGCCCTCGAGAATTGGAGGGGGGGGGGAGGGTAAATCCCTACACCAAGTACCTTGAGGCAAGATTTAAGCTTGTGACCTCCAAACTCACAATGTAGGAATATATTCACTAGACCAAGCAACCTTGGTGAGATGACGTGTTAATACGTAGGTGGTGCCCTGCAACATTTCTGAAATTTTCATCCCTTCCTGTTCTTTGCAAATACCTCAAGTAGTTAAACAGAAGCTTAACTATAACAAAGTCATCTGATTCATATGAAGCATAAATCCTTTGTTGCGATTGTGATGATAGTAGCTAAATCTAGAATTGTCTTTTGGGACGTTTGCAAGAGTTCATAAGTTCAACCAAGGAAGGAAGAGGTCTAGGAACAGGTACATTCATAGACCTATAGAGCTTCCTGAAATTTTCACTCAACCCTGTTGATGATCTGATATAAGAACATGAAACAGATTTATAAACGGTTGCATCCCTCCTTAACATATCTGATTCAGTATCAGCATCTACCACCTCTGTGTTGTTTTCATTAGGCTTCTCAACTATATGTTCCCTGTCATCAGAACATAGCAGCTTCTGTTCCACCTCTTCATGTTTACTACCATCTTCTACACGAGTAGTGATACTGATACATGTTTCTCTGAAGGGCATAATTAGTGGGGGACACTCTGGGGCTTTTTCAGGGAGAGGAAGGGGTGAGGGAGAACTCTTAAATCCACTACCTAAGATGGGGGTGTACTTCCTCTCTTCTTCAGACACGGTTTTCATTTCTTCAGCCAAAATGCAAGAATGGTAACCAAGTCTTGCTCGTCCAAATAAGGTTATTGATGGCTTCTTGCTTGGAGGAAGCAAATTTAGGAGATTTTCCTGGTTTGTCAATGCCTTTGGTAGTTGCAGCTCAAGTTCCTCAGCAACTGCATTGGTTATCAACATAGCAGAAGAGGATCCACTACTTTCTACCAAGACCTCTGACGCCTTCAGAGAAGTTTCCATGCTAATGTCCAGAACCTTCCAGAAACGATCATCAGATACTCGAGGGATAAAGCAGTGTTTCTTAACATACTCCAACTCCATAGCTCGGCACTCAAGAGTTGTTGAAACAACCCATTTAGGCGAAAGAAGTTTCAAAGCCCACTCTAATTCTTGTCTGGAAGAATGCATTGAGTAGCAAACATGCCACACACCAAACTGGTCCTTCACTGGAATGTTTGATCTTTCTAGAATTTTCCTTTCCCTAACTGTAAGCTCAGTTTCTTCCATTGCATACCATTGTGCTGAGGGTCGTATTATGAGAGGCTCTGGCTGCATATTCTTACGGGCCTCCAATATTTTATTTTTTGCCTTCTCATACAGGTTTGGAAAACCTTCAAACAAATGGAAACGAGAAGCAGGATCAACAGAAAGGATTTGTGGAGCTATAAGTTCCAAAGCTTGGTAAAAGTCTGAGTCCTTGGCTTTATCGACATATATCTTGGACCCAAACGTTTGAACAACTTTAACAAGCACCTCTTCCTGGCCAAGAAAGTTGCAGGTGAGGTATACTGTCGGGACATCAGGATGTTTCCATATGCAATTGATAACCTGTTTCACAAACATGTCAGAAATACTACCTGGTCAAATTTCAACACCAAGTGCTAAAATGCCAAAGAACAAACAATTGGAGAGGAGAAATTGAAACGTCTCATACTCTCATGCCTGTAGGAAATATGAAAACGCATTGATACATTGATTGTGATAGCCAAATCAATCTATCCAGGAGTTCATTTGGCCTACAAATAGGATCGGCATCTATGGTCTCTGTCAAGTGAGAAGGTAGTTTCGATTTTACTTCATAGGTGAAAACTATCATATTCTTTAAATGTGTAACGAAAAACTGAATAGGTCATACAGAACTTACACTCTTACAGTCACCACAAATTTTATGAGCAATATATGTAATTGACAAAAATCCTGAACATAAATTTTCTCCATTTTAAATAATGTGAGTATCCAGTCCTTTGTATGACAGAGCTGGGAAAGACACAATTATAAC

mRNA sequence

GAAATCTGAAATCTGAAATGTACAAGTACTAAGAAAAAAGAGTGATTGAAAACTCTGTTCCTCTTTCACTCATAGTCTCATATGGCTTTATCCACAGCTCTCTCAAACCCACAAGCTTTATCTTGCTTCTCTTCTTTCCCAAAGACCACTAAAATCATCCCTTTTCGACGTCAGTTATGTGTTCGAGCTGAAGCTGATAGTTCACAGAAACTCACAGAGACCAAAACTAAAGAAAGCACCAATGACAAACCTCCCCCTAAAAAACCTCCAAAGCCTGTCTATTCAATGAAAAAAGGTCAGATTGTAAGGGTGGAAAGGGAGAAGTACCTTGATAGTGTCAATTATTTGTCAGTTGGACATCCAAAGTACTACAAAGGGCTGGACTATATTTATGAAGACCGTGGAGAGGTCTTGGATTTACGTTTTTTTGAGACAGGAGAGTATGCACTTGTTTCTTGGGTTGGAATCCCAACATCACCAGCTTGGCTTCCAACAGATATGCTTATTAAGTCTGATAAACTCAACTATGAAAGGATGTGATTCAGATGCTCAAGAATTATCACTTTGTTCGAGCTGAAGCTGATAGTTCTTGAGCAATCCCTTTTCTTCTGCAACTGCTTCAGGCACCAGCTGATAGTTCTTCATTTATCAATCTGTGTAGTTAACCTTTGACAAATGAACTATATTACAGCATCAAAAGGCTACAAATTTCAAGTTAAAGAGTAAATTTTCTGGTCTGTATTCTGCTAGTCTGTTCCTGCTTTGCGCTCTCAGTTACATAAAGCTGGTGCCTGAAGCAGTTGCAGAAGAAAAATAGAGTCCGCAGATTATATCCCAATCAACTTAGATGGGAAAATATTTGGAAAAAACTCGGCTCTCCAACTTTTATCAGTACAAATAAATGAATAATAGATACAACATCCGGTACACATTGTAATTCAGAAAGGAAACAGTTCCTATCTGTAAACCTCCTATCCTTTCCAAATTCTGAAGAAATTTGTACGTTACCCTGATTCTACCAATGCATTGGAGATATGTTGACTTTTTAATTTTTTTGATGAGATGGATCCTACTGGACAAGAACACAAGAACCCTGACGAATCAGCTCACCCAGATTTGCAAATCAGGCCCTCGAGAATTGGAGGGGGGGGGGAGGGTAAATCCCTACACCAAGTACCTTGAGGCAAGATTTAAGCTTGTGACCTCCAAACTCACAATGTAGGAATATATTCACTAGACCAAGCAACCTTGGTGAGATGACGTGTTAATACGTAGGTGGTGCCCTGCAACATTTCTGAAATTTTCATCCCTTCCTGTTCTTTGCAAATACCTCAAGTAGTTAAACAGAAGCTTAACTATAACAAAGTCATCTGATTCATATGAAGCATAAATCCTTTGTTGCGATTGTGATGATAGTAGCTAAATCTAGAATTGTCTTTTGGGACGTTTGCAAGAGTTCATAAGTTCAACCAAGGAAGGAAGAGGTCTAGGAACAGGTACATTCATAGACCTATAGAGCTTCCTGAAATTTTCACTCAACCCTGTTGATGATCTGATATAAGAACATGAAACAGATTTATAAACGGTTGCATCCCTCCTTAACATATCTGATTCAGTATCAGCATCTACCACCTCTGTGTTGTTTTCATTAGGCTTCTCAACTATATGTTCCCTGTCATCAGAACATAGCAGCTTCTGTTCCACCTCTTCATGTTTACTACCATCTTCTACACGAGTAGTGATACTGATACATGTTTCTCTGAAGGGCATAATTAGTGGGGGACACTCTGGGGCTTTTTCAGGGAGAGGAAGGGGTGAGGGAGAACTCTTAAATCCACTACCTAAGATGGGGGTGTACTTCCTCTCTTCTTCAGACACGGTTTTCATTTCTTCAGCCAAAATGCAAGAATGGTAACCAAGTCTTGCTCGTCCAAATAAGGTTATTGATGGCTTCTTGCTTGGAGGAAGCAAATTTAGGAGATTTTCCTGGTTTGTCAATGCCTTTGGTAGTTGCAGCTCAAGTTCCTCAGCAACTGCATTGGTTATCAACATAGCAGAAGAGGATCCACTACTTTCTACCAAGACCTCTGACGCCTTCAGAGAAGTTTCCATGCTAATGTCCAGAACCTTCCAGAAACGATCATCAGATACTCGAGGGATAAAGCAGTGTTTCTTAACATACTCCAACTCCATAGCTCGGCACTCAAGAGTTGTTGAAACAACCCATTTAGGCGAAAGAAGTTTCAAAGCCCACTCTAATTCTTGTCTGGAAGAATGCATTGAGTAGCAAACATGCCACACACCAAACTGGTCCTTCACTGGAATGTTTGATCTTTCTAGAATTTTCCTTTCCCTAACTGTAAGCTCAGTTTCTTCCATTGCATACCATTGTGCTGAGGGTCGTATTATGAGAGGCTCTGGCTGCATATTCTTACGGGCCTCCAATATTTTATTTTTTGCCTTCTCATACAGGTTTGGAAAACCTTCAAACAAATGGAAACGAGAAGCAGGATCAACAGAAAGGATTTGTGGAGCTATAAGTTCCAAAGCTTGGTGAGGTATACTGTCGGGACATCAGGATGTTTCCATATGCAATTGATAACCTGTTTCACAAACATGTCAGAAATACTACCTGGTCAAATTTCAACACCAAGTGCTAAAATGCCAAAGAACAAACAATTGGAGAGGAGAAATTGAAACGTCTCATACTCTCATGCCTGTAGGAAATATGAAAACGCATTGATACATTGATTGTGATAGCCAAATCAATCTATCCAGGAGTTCATTTGGCCTACAAATAGGATCGGCATCTATGGTCTCTGTCAAGTGAGAAGGTAGTTTCGATTTTACTTCATAGGTGAAAACTATCATATTCTTTAAATGTGTAACGAAAAACTGAATAGGTCATACAGAACTTACACTCTTACAGTCACCACAAATTTTATGAGCAATATATGTAATTGACAAAAATCCTGAACATAAATTTTCTCCATTTTAAATAATGTGAGTATCCAGTCCTTTGTATGACAGAGCTGGGAAAGACACAATTATAAC

Coding sequence (CDS)

ATGGCTTTATCCACAGCTCTCTCAAACCCACAAGCTTTATCTTGCTTCTCTTCTTTCCCAAAGACCACTAAAATCATCCCTTTTCGACGTCAGTTATGTGTTCGAGCTGAAGCTGATAGTTCACAGAAACTCACAGAGACCAAAACTAAAGAAAGCACCAATGACAAACCTCCCCCTAAAAAACCTCCAAAGCCTGTCTATTCAATGAAAAAAGGTCAGATTGTAAGGGTGGAAAGGGAGAAGTACCTTGATAGTGTCAATTATTTGTCAGTTGGACATCCAAAGTACTACAAAGGGCTGGACTATATTTATGAAGACCGTGGAGAGGTCTTGGATTTACGTTTTTTTGAGACAGGAGAGTATGCACTTGTTTCTTGGGTTGGAATCCCAACATCACCAGCTTGGCTTCCAACAGATATGCTTATTAAGTCTGATAAACTCAACTATGAAAGGATGTGA

Protein sequence

MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPKKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11246.1	Spo11246.1	mRNA

Homology

[Close]

BLAST of Spo11246.1 vs. NCBI nr
Match: gi|902205551|gb|KNA15194.1| (hypothetical protein SOVF_100570 [Spinacia oleracea])

HSP 1 Score: 307.0 bits (785), Expect = 1.800e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60
           MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK
Sbjct: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60

Query: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120
           KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE
Sbjct: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120

Query: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM
Sbjct: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 152

[Close]

BLAST of Spo11246.1 vs. NCBI nr
Match: gi|261865340|gb|ACY01921.1| (hypothetical protein [Beta vulgaris])

HSP 1 Score: 277.3 bits (708), Expect = 1.600e-71
Identity = 132/152 (86.84%), Postives = 145/152 (95.39%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60
           MA ST L NPQA SCFSSFPKTTK I FRR++CV+AEADS+QKLTETKT++S+NDKPPPK
Sbjct: 1   MAFSTTLPNPQAFSCFSSFPKTTKSISFRRRICVKAEADSTQKLTETKTQDSSNDKPPPK 60

Query: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120
           KPPKPVYSMKKGQIVRVE+EKYL+S+NYLSVGHP YYKGLDYIYEDRGE+LD+RFFETGE
Sbjct: 61  KPPKPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEILDIRFFETGE 120

Query: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           YALVSWVGIPTSPAWLPTDMLIKSDKL+YERM
Sbjct: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLDYERM 152

[Close]

BLAST of Spo11246.1 vs. NCBI nr
Match: gi|731338194|ref|XP_010680197.1| (PREDICTED: uncharacterized protein LOC104895398 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 276.2 bits (705), Expect = 3.500e-71
Identity = 131/152 (86.18%), Postives = 145/152 (95.39%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60
           MA ST L NPQA SCFSSFPKTTK I FRR++CV+AEADS+QKLTETKT++++NDKPPPK
Sbjct: 1   MAFSTTLPNPQAFSCFSSFPKTTKSISFRRRICVKAEADSTQKLTETKTQDTSNDKPPPK 60

Query: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120
           KPPKPVYSMKKGQIVRVE+EKYL+S+NYLSVGHP YYKGLDYIYEDRGE+LD+RFFETGE
Sbjct: 61  KPPKPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEILDIRFFETGE 120

Query: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           YALVSWVGIPTSPAWLPTDMLIKSDKL+YERM
Sbjct: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLDYERM 152

[Close]

BLAST of Spo11246.1 vs. NCBI nr
Match: gi|225431463|ref|XP_002280638.1| (PREDICTED: uncharacterized protein LOC100248924 isoform X1 [Vitis vinifera])

HSP 1 Score: 200.7 bits (509), Expect = 1.900e-48
Identity = 107/159 (67.30%), Postives = 128/159 (80.50%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSS-FPKTTKIIPFRRQL--CVRAEADSSQKLTETKTKE-STNDK 60
           MA S+  S+  +LSCFSS FP+T +  PFR      V++     +KL ++ T++ S+N +
Sbjct: 1   MAFSSTFSH-NSLSCFSSSFPQTPRPSPFRFTSIRAVKSAEPDKEKLAKSNTQQDSSNAQ 60

Query: 61  PP---PKKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDL 120
           PP   PK P KPVYSMKKGQIVRV++EKYL+S+NYLSVGHP YYKGLDYIYEDRGEVLDL
Sbjct: 61  PPTTAPKYPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDL 120

Query: 121 RFFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           R FETGEYAL++WVGIPT+PAWLPTDMLIKSDKLNYERM
Sbjct: 121 RIFETGEYALIAWVGIPTAPAWLPTDMLIKSDKLNYERM 158

[Close]

BLAST of Spo11246.1 vs. NCBI nr
Match: gi|645278840|ref|XP_008244416.1| (PREDICTED: uncharacterized protein LOC103342560 [Prunus mume])

HSP 1 Score: 198.0 bits (502), Expect = 1.200e-47
Identity = 103/160 (64.38%), Postives = 121/160 (75.62%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTK---IIPFRRQLCVRAEADSSQKLTETKTKESTNDKP 60
           M  S    +  + S FS FP+T +   + P   +    AE D ++KL +TKT+ESTN   
Sbjct: 1   MTSSATTLSQNSFSSFSRFPQTLRRNPLHPLSIKAVKAAEPDKTEKLKQTKTQESTNATQ 60

Query: 61  PP-----KKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLD 120
           P      K P KPVYSMKKGQIVRVE+EKYL+SVNYLSVGHP YYKGLDYIYEDRGEVLD
Sbjct: 61  PSTTTASKPPKKPVYSMKKGQIVRVEKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLD 120

Query: 121 LRFFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           LR FETGEYALV+WVG+PT+PAWLPT+MLIKS+KLNYER+
Sbjct: 121 LRIFETGEYALVAWVGVPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R894_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_100570 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.300e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60
           MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK
Sbjct: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60

Query: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120
           KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE
Sbjct: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120

Query: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM
Sbjct: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 152

[Close]

BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
Match: E2DMY8_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.100e-71
Identity = 132/152 (86.84%), Postives = 145/152 (95.39%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60
           MA ST L NPQA SCFSSFPKTTK I FRR++CV+AEADS+QKLTETKT++S+NDKPPPK
Sbjct: 1   MAFSTTLPNPQAFSCFSSFPKTTKSISFRRRICVKAEADSTQKLTETKTQDSSNDKPPPK 60

Query: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120
           KPPKPVYSMKKGQIVRVE+EKYL+S+NYLSVGHP YYKGLDYIYEDRGE+LD+RFFETGE
Sbjct: 61  KPPKPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEILDIRFFETGE 120

Query: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           YALVSWVGIPTSPAWLPTDMLIKSDKL+YERM
Sbjct: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLDYERM 152

[Close]

BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAV8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132550 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.400e-71
Identity = 131/152 (86.18%), Postives = 145/152 (95.39%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRRQLCVRAEADSSQKLTETKTKESTNDKPPPK 60
           MA ST L NPQA SCFSSFPKTTK I FRR++CV+AEADS+QKLTETKT++++NDKPPPK
Sbjct: 1   MAFSTTLPNPQAFSCFSSFPKTTKSISFRRRICVKAEADSTQKLTETKTQDTSNDKPPPK 60

Query: 61  KPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGE 120
           KPPKPVYSMKKGQIVRVE+EKYL+S+NYLSVGHP YYKGLDYIYEDRGE+LD+RFFETGE
Sbjct: 61  KPPKPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEILDIRFFETGE 120

Query: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           YALVSWVGIPTSPAWLPTDMLIKSDKL+YERM
Sbjct: 121 YALVSWVGIPTSPAWLPTDMLIKSDKLDYERM 152

[Close]

BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
Match: D7U4E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01310 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.300e-48
Identity = 107/159 (67.30%), Postives = 128/159 (80.50%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSS-FPKTTKIIPFRRQL--CVRAEADSSQKLTETKTKE-STNDK 60
           MA S+  S+  +LSCFSS FP+T +  PFR      V++     +KL ++ T++ S+N +
Sbjct: 1   MAFSSTFSH-NSLSCFSSSFPQTPRPSPFRFTSIRAVKSAEPDKEKLAKSNTQQDSSNAQ 60

Query: 61  PP---PKKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDL 120
           PP   PK P KPVYSMKKGQIVRV++EKYL+S+NYLSVGHP YYKGLDYIYEDRGEVLDL
Sbjct: 61  PPTTAPKYPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDL 120

Query: 121 RFFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           R FETGEYAL++WVGIPT+PAWLPTDMLIKSDKLNYERM
Sbjct: 121 RIFETGEYALIAWVGIPTAPAWLPTDMLIKSDKLNYERM 158

[Close]

BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
Match: M5WKB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012640mg PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.100e-47
Identity = 104/160 (65.00%), Postives = 120/160 (75.00%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSSFPKTTKIIPFRR---QLCVRAEADSSQKLTETKTKESTNDKP 60
           MA S    +    S FS FP+T +  P      +    AE D ++KL +TKT+ESTN   
Sbjct: 1   MASSATTLSQNPFSSFSRFPQTLRRNPLHLLSIKAIKAAEPDKTEKLKQTKTQESTNATQ 60

Query: 61  PP-----KKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLD 120
           P      K P KPVYSMKKGQIVRVE+EKYL+SVNYLSVGHP YYKGLDYIYEDRGEVLD
Sbjct: 61  PSTTTASKPPKKPVYSMKKGQIVRVEKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLD 120

Query: 121 LRFFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
           LR FETGEYALV+WVG+PT+PAWLPT+MLIKS+KLNYER+
Sbjct: 121 LRIFETGEYALVAWVGVPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Spo11246.1 vs. ExPASy Swiss-Prot
Match: NDHO_ARATH (NAD(P)H-quinone oxidoreductase subunit O, chloroplastic OS=Arabidopsis thaliana GN=ndhO PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.900e-45
Identity = 99/158 (62.66%), Postives = 118/158 (74.68%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSS-FPKTTKIIPFRR--QLCVRAEADSSQKLTETKTKESTND-- 60
           MA S  +S   +LS  SS  P +++ +P R   Q  V+AEA+  ++ T+ K+    +   
Sbjct: 1   MAFSATVSQLSSLSTISSSLPISSRRLPHRSLPQFTVKAEAEKEKQSTQGKSDGEASPAA 60

Query: 61  -KPPPKKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLR 120
            K P   P KPVYSMKKGQIVRVE+EKYL+S+NYLSVGHP +YKGLDYIYEDRGEVLDLR
Sbjct: 61  TKTPKTLPKKPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPFYKGLDYIYEDRGEVLDLR 120

Query: 121 FFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
            FETGEYALV WVGIPT+PAWLPTDMLIK +KL YERM
Sbjct: 121 VFETGEYALVGWVGIPTAPAWLPTDMLIKCEKLVYERM 158

[Close]

BLAST of Spo11246.1 vs. TAIR (Arabidopsis)
Match: AT1G74880.1 (NAD(P)H:plastoquinone dehydrogenase complex subunit O)

HSP 1 Score: 183.3 bits (464), Expect = 1.100e-46
Identity = 99/158 (62.66%), Postives = 118/158 (74.68%), Query Frame = 1


		  
Query: 1   MALSTALSNPQALSCFSS-FPKTTKIIPFRR--QLCVRAEADSSQKLTETKTKESTND-- 60
           MA S  +S   +LS  SS  P +++ +P R   Q  V+AEA+  ++ T+ K+    +   
Sbjct: 1   MAFSATVSQLSSLSTISSSLPISSRRLPHRSLPQFTVKAEAEKEKQSTQGKSDGEASPAA 60

Query: 61  -KPPPKKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLR 120
            K P   P KPVYSMKKGQIVRVE+EKYL+S+NYLSVGHP +YKGLDYIYEDRGEVLDLR
Sbjct: 61  TKTPKTLPKKPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPFYKGLDYIYEDRGEVLDLR 120

Query: 121 FFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYERM 153
            FETGEYALV WVGIPT+PAWLPTDMLIK +KL YERM
Sbjct: 121 VFETGEYALVGWVGIPTAPAWLPTDMLIKCEKLVYERM 158

The following BLAST results are available for this feature:

BLAST of Spo11246.1 vs. NCBI nr
BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
BLAST of Spo11246.1 vs. ExPASy Swiss-Prot
BLAST of Spo11246.1 vs. TAIR (Arabidopsis)

BLAST of Spo11246.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902205551\|gb\|KNA15194.1\|	1.8e-80	100.	hypothetical protein SOVF_1005...	[more]
gi\|261865340\|gb\|ACY01921.1\|	1.6e-71	86.8	hypothetical protein [Beta vul...	[more]
gi\|731338194\|ref\|XP_010680197.1\|	3.5e-71	86.1	PREDICTED: uncharacterized pro...	[more]
gi\|225431463\|ref\|XP_002280638.1\|	1.9e-48	67.3	PREDICTED: uncharacterized pro...	[more]
gi\|645278840\|ref\|XP_008244416.1\|	1.2e-47	64.3	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11246.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R894_SPIOL	1.3e-80	100.	Uncharacterized protein OS=Spi...	[more]
E2DMY8_BETVU	1.1e-71	86.8	Putative uncharacterized prote...	[more]
A0A0J8CAV8_BETVU	2.4e-71	86.1	Uncharacterized protein OS=Bet...	[more]
D7U4E0_VITVI	1.3e-48	67.3	Putative uncharacterized prote...	[more]
M5WKB8_PRUPE	1.1e-47	65.0	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo11246.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
NDHO_ARATH	1.9e-45	62.6	NAD(P)H-quinone oxidoreductase...	[more]

BLAST of Spo11246.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G74880.1	1.1e-46	62.6	NAD(P)H:plastoquinone dehydrog...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020905	NAD(P)H-quinone oxidoreductase subunit O	PFAM	PF11910	NdhO	coord: 69..143 score: 1.9
None	No IPR available	PANTHER	PTHR36728	FAMILY NOT NAMED	coord: 1..152 score: 1.0
None	No IPR available	PANTHER	PTHR36728:SF2	SUBFAMILY NOT NAMED	coord: 1..152 score: 1.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0035265	organ growth
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0032984	protein-containing complex disassembly
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009306	protein secretion
biological_process	GO:0043953	protein transport by the Tat complex
biological_process	GO:0048868	pollen tube development
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0015979	photosynthesis
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006412	translation
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0042793	plastid transcription
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006631	fatty acid metabolic process
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009501	amyloplast
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0010007	magnesium chelatase complex
cellular_component	GO:0005835	fatty acid synthase complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009537	proplastid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009513	etioplast
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0033281	TAT protein transport complex
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0016851	magnesium chelatase activity
molecular_function	GO:0009977	proton motive force dependent protein transmembrane transporter activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005504	fatty acid binding
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity
molecular_function	GO:0004602	glutathione peroxidase activity
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0046422	violaxanthin de-epoxidase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18617	0.84	Barchart \| Table
Spo02826	0.81	Barchart \| Table
Spo18184	0.80	Barchart \| Table
Spo21300	0.79	Barchart \| Table
Spo01255	0.78	Barchart \| Table
Spo03139	0.77	Barchart \| Table
Spo21391	0.75	Barchart \| Table
Spo01928	0.73	Barchart \| Table
Spo09384	0.73	Barchart \| Table
Spo06775	0.73	Barchart \| Table
Spo18336	0.72	Barchart \| Table
Spo04709	0.72	Barchart \| Table
Spo02396	0.71	Barchart \| Table
Spo25773	0.71	Barchart \| Table
Spo12682	0.71	Barchart \| Table
Spo25395	0.70	Barchart \| Table
Spo23526	0.69	Barchart \| Table
Spo24307	0.69	Barchart \| Table
Spo24633	0.68	Barchart \| Table
Spo05365	0.68	Barchart \| Table
Spo03785	0.68	Barchart \| Table
Spo01014	0.67	Barchart \| Table
Spo10106	0.67	Barchart \| Table
Spo10987	0.67	Barchart \| Table
Spo11445	0.67	Barchart \| Table
Spo13836	0.67	Barchart \| Table
Spo18862	0.67	Barchart \| Table
Spo25660	0.67	Barchart \| Table
Spo04460	0.66	Barchart \| Table
Spo24913	0.66	Barchart \| Table
Spo14835	0.66	Barchart \| Table
Spo25804	0.66	Barchart \| Table
Spo09945	0.65	Barchart \| Table
Spo18887	0.65	Barchart \| Table
Spo03523	0.65	Barchart \| Table