Spo11248 (gene)

Overview
NameSpo11248
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L10, putative
Locationchr3 : 49569350 .. 49570057 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCCACCATCTCCACCACCACAACCTCACTCTCTCACCATACCCTAACCCTAATCCGCACCCAATCCCACCACCACCATCAACTCCGGCACTTCGCAAAATATACACCCTATAAACCCCTTCCAAAACCCAAAGTCCACCAAAAACTCCGGGCCATCAAAACCCTAAAATCCCACCTGCAAGACTCATACTTGATCTCCCCTTTCCCCTGCCATGGCTTCTCAGCCAACAAATTCAAACCCCTTAAAACCCCTCTTCCTTCTGACCCATCTGCTGCAAAGCTTGTTTTTGTGAAGAATTCCCTTGTTTCTCAGGCATTTGCTGGGACCCAGTTCGAGGCTTTGGGGAGTTGTATGAAGGGCATGAATTCCCTCCTCTTTGTTAAGAAGGAAGACGCCGTGGGCCCAGTAATGGGGGGTGTGAAAAGTGCTGTCAAAGAAGGGAAATTGGAGTTCAATGACTTCCCTGGGGCTGTTGTCAATGGTCAACTTTATGGGCATTTGGATTTGGAGGTTTTCCAGAATACACCCTCCAAAATGGAGGCTCATGGGATGGTTCTTGGTTCACTTTTCGGGCCGTCTTCGACTTTGATGGCGGTTTTGGAAGGGTTTTGTGCTGATGATTCTGCCAATGAGGCCGCTACCGATGCTCCTGCTGATGGTGGGATTGATGCTAAGGATGTGAGTGAAAGCCCTGCTCAATGA

mRNA sequence

ATGGGTGCCACCATCTCCACCACCACAACCTCACTCTCTCACCATACCCTAACCCTAATCCGCACCCAATCCCACCACCACCATCAACTCCGGCACTTCGCAAAATATACACCCTATAAACCCCTTCCAAAACCCAAAGTCCACCAAAAACTCCGGGCCATCAAAACCCTAAAATCCCACCTGCAAGACTCATACTTGATCTCCCCTTTCCCCTGCCATGGCTTCTCAGCCAACAAATTCAAACCCCTTAAAACCCCTCTTCCTTCTGACCCATCTGCTGCAAAGCTTGTTTTTGTGAAGAATTCCCTTGTTTCTCAGGCATTTGCTGGGACCCAGTTCGAGGCTTTGGGGAGTTGTATGAAGGGCATGAATTCCCTCCTCTTTGTTAAGAAGGAAGACGCCGTGGGCCCAGTAATGGGGGGTGTGAAAAGTGCTGTCAAAGAAGGGAAATTGGAGTTCAATGACTTCCCTGGGGCTGTTGTCAATGGTCAACTTTATGGGCATTTGGATTTGGAGGTTTTCCAGAATACACCCTCCAAAATGGAGGCTCATGGGATGGTTCTTGGTTCACTTTTCGGGCCGTCTTCGACTTTGATGGCGGTTTTGGAAGGGTTTTGTGCTGATGATTCTGCCAATGAGGCCGCTACCGATGCTCCTGCTGATGGTGGGATTGATGCTAAGGATGTGAGTGAAAGCCCTGCTCAATGA

Coding sequence (CDS)

ATGGGTGCCACCATCTCCACCACCACAACCTCACTCTCTCACCATACCCTAACCCTAATCCGCACCCAATCCCACCACCACCATCAACTCCGGCACTTCGCAAAATATACACCCTATAAACCCCTTCCAAAACCCAAAGTCCACCAAAAACTCCGGGCCATCAAAACCCTAAAATCCCACCTGCAAGACTCATACTTGATCTCCCCTTTCCCCTGCCATGGCTTCTCAGCCAACAAATTCAAACCCCTTAAAACCCCTCTTCCTTCTGACCCATCTGCTGCAAAGCTTGTTTTTGTGAAGAATTCCCTTGTTTCTCAGGCATTTGCTGGGACCCAGTTCGAGGCTTTGGGGAGTTGTATGAAGGGCATGAATTCCCTCCTCTTTGTTAAGAAGGAAGACGCCGTGGGCCCAGTAATGGGGGGTGTGAAAAGTGCTGTCAAAGAAGGGAAATTGGAGTTCAATGACTTCCCTGGGGCTGTTGTCAATGGTCAACTTTATGGGCATTTGGATTTGGAGGTTTTCCAGAATACACCCTCCAAAATGGAGGCTCATGGGATGGTTCTTGGTTCACTTTTCGGGCCGTCTTCGACTTTGATGGCGGTTTTGGAAGGGTTTTGTGCTGATGATTCTGCCAATGAGGCCGCTACCGATGCTCCTGCTGATGGTGGGATTGATGCTAAGGATGTGAGTGAAAGCCCTGCTCAATGA

Protein sequence

MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11248.1Spo11248.1mRNA


Homology
[Close]
BLAST of Spo11248.1 vs. NCBI nr
Match: gi|902205553|gb|KNA15196.1| (hypothetical protein SOVF_100590 [Spinacia oleracea])

HSP 1 Score: 463.0 bits (1190), Expect = 3.100e-127
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 

		  

Query: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH 60
           MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH
Sbjct: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH 60

Query: 61  LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM 120
           LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM
Sbjct: 61  LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM 120

Query: 121 KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK 180
           KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK
Sbjct: 121 KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK 180

Query: 181 MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ 236
           MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ
Sbjct: 181 MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ 235
[Close]
BLAST of Spo11248.1 vs. NCBI nr
Match: gi|731338204|ref|XP_010680202.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 379.4 bits (973), Expect = 4.500e-102
Identity = 197/236 (83.47%), Postives = 216/236 (91.53%), Query Frame = 1 

		  

Query: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH 60
           MGATISTTTT LSH TLTL+R     HHQLRHFAK+TPYKPLPKPK+HQKLRAIKTLKSH
Sbjct: 1   MGATISTTTTPLSHQTLTLVR-----HHQLRHFAKWTPYKPLPKPKLHQKLRAIKTLKSH 60

Query: 61  LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM 120
           LQDSY ISPFPCHGFSANKFK LKTPLPSDPSAAKLVFVKNSLVS+AF+GTQFEALGSCM
Sbjct: 61  LQDSYFISPFPCHGFSANKFKTLKTPLPSDPSAAKLVFVKNSLVSKAFSGTQFEALGSCM 120

Query: 121 KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK 180
           KGMNSLLFVKKEDAVGPVMGGVK+AVK+GK+EFNDFPGAVV GQLYGHLDLEVF+++PSK
Sbjct: 121 KGMNSLLFVKKEDAVGPVMGGVKAAVKDGKMEFNDFPGAVVGGQLYGHLDLEVFRSSPSK 180

Query: 181 MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEA-ATDAPADGGIDAKDVSESPAQ 236
           ME+HGM+LGSLFGPSSTLMA++EGF ADD+A +A A+D PA+G   AKDV   PAQ
Sbjct: 181 MESHGMLLGSLFGPSSTLMAIVEGFAADDAAADAGASDVPAEGENVAKDV---PAQ 228
[Close]
BLAST of Spo11248.1 vs. NCBI nr
Match: gi|661892104|emb|CDP04330.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 119.8 bits (299), Expect = 6.500e-24
Identity = 74/195 (37.95%), Postives = 110/195 (56.41%), Query Frame = 1 

		  

Query: 11  SLSHHTLTLIRTQSHHHHQLRH--FAKYTPYKPLPKPKVHQKLRAIKTLKSHLQDSYLIS 70
           SL +H      T  HHHH  R   FA  T    + + K   K   ++++K  LQ  YLI+
Sbjct: 26  SLKYHFRNPFLTTHHHHHHCRRPKFAPLTIRSAISRTK---KEETVESVKRQLQGCYLIA 85

Query: 71  PFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCMKGMNSLLF 130
                GF+  +F+ L+  LP    ++KL+  KN+LV +A  GTQ+EAL  CMKGMN+ LF
Sbjct: 86  GIGYKGFTVKQFQELRRQLPE---SSKLLVAKNTLVYKAIEGTQWEALKPCMKGMNAWLF 145

Query: 131 VKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSKMEAHGMVL 190
           V  E+ +   +   +   +E KLE NDF GAV  G+LYG  + +  ++ PS+ E +  +L
Sbjct: 146 VHSEE-IPAAIKPYREFQREQKLEGNDFTGAVFEGKLYGPEEFKALESLPSRAEIYAKIL 205

Query: 191 GSLFGPSSTLMAVLE 204
           GSL GP+S ++  L+
Sbjct: 206 GSLKGPASAVVGTLQ 213
[Close]
BLAST of Spo11248.1 vs. NCBI nr
Match: gi|565387093|ref|XP_006359339.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Solanum tuberosum])

HSP 1 Score: 110.5 bits (275), Expect = 3.900e-21
Identity = 57/155 (36.77%), Postives = 94/155 (60.65%), Query Frame = 1 

		  

Query: 49  QKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAF 108
           +K   ++T+K  L+D YL++     G +  +F+ L+  LP      KL+  KN+LV +A 
Sbjct: 54  KKEETVETVKQQLEDCYLLAGISYKGLTVKQFQDLRAQLPE---TTKLLVAKNTLVLKAI 113

Query: 109 AGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGH 168
            GT++EAL  CMKGMN+ LFV  E+ +   +   ++ ++E KLE NDF G V  G+ YG 
Sbjct: 114 EGTKWEALKPCMKGMNAWLFVHSEE-IPAALKPYRTFLREKKLEENDFTGGVFEGKFYGP 173

Query: 169 LDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLE 204
            + +V +N P++ E +  +LGSL GP+S ++  ++
Sbjct: 174 DEFKVLENLPTRAEIYSQLLGSLKGPASAVVGTIQ 204
[Close]
BLAST of Spo11248.1 vs. NCBI nr
Match: gi|731362825|ref|XP_010693095.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.0 bits (271), Expect = 1.100e-20
Identity = 61/160 (38.12%), Postives = 91/160 (56.88%), Query Frame = 1 

		  

Query: 49  QKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAF 108
           +K   ++T+KSHL++ YL++     GF+  +F+ L+  LP      KLV  KN+LV +A 
Sbjct: 54  KKEETVETVKSHLENCYLVAAINYKGFTVKQFQELRKALPE---TTKLVVAKNTLVEKAV 113

Query: 109 AGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGH 168
             TQ+EA+  CMKGMN+ LFV  E+  G  +   ++  KE KLE NDF GA   G+ YG 
Sbjct: 114 ENTQWEAIKPCMKGMNAWLFVHTEEIPG-ALKPYRTFQKEKKLEDNDFTGACFEGKFYGP 173

Query: 169 LDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLEGFCAD 209
            D +  +  PS+ + +  +LGSL  P   L+  L+    D
Sbjct: 174 EDFKGLETMPSRADVYAKLLGSLKTPGIALVGTLQAPARD 209
[Close]
BLAST of Spo11248.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6Q7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_100590 PE=3 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 2.200e-127
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 

		  

Query: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH 60
           MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH
Sbjct: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH 60

Query: 61  LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM 120
           LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM
Sbjct: 61  LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM 120

Query: 121 KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK 180
           KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK
Sbjct: 121 KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK 180

Query: 181 MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ 236
           MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ
Sbjct: 181 MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAATDAPADGGIDAKDVSESPAQ 235
[Close]
BLAST of Spo11248.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C5X2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132570 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.200e-102
Identity = 197/236 (83.47%), Postives = 216/236 (91.53%), Query Frame = 1 

		  

Query: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVHQKLRAIKTLKSH 60
           MGATISTTTT LSH TLTL+R     HHQLRHFAK+TPYKPLPKPK+HQKLRAIKTLKSH
Sbjct: 1   MGATISTTTTPLSHQTLTLVR-----HHQLRHFAKWTPYKPLPKPKLHQKLRAIKTLKSH 60

Query: 61  LQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCM 120
           LQDSY ISPFPCHGFSANKFK LKTPLPSDPSAAKLVFVKNSLVS+AF+GTQFEALGSCM
Sbjct: 61  LQDSYFISPFPCHGFSANKFKTLKTPLPSDPSAAKLVFVKNSLVSKAFSGTQFEALGSCM 120

Query: 121 KGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSK 180
           KGMNSLLFVKKEDAVGPVMGGVK+AVK+GK+EFNDFPGAVV GQLYGHLDLEVF+++PSK
Sbjct: 121 KGMNSLLFVKKEDAVGPVMGGVKAAVKDGKMEFNDFPGAVVGGQLYGHLDLEVFRSSPSK 180

Query: 181 MEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEA-ATDAPADGGIDAKDVSESPAQ 236
           ME+HGM+LGSLFGPSSTLMA++EGF ADD+A +A A+D PA+G   AKDV   PAQ
Sbjct: 181 MESHGMLLGSLFGPSSTLMAIVEGFAADDAAADAGASDVPAEGENVAKDV---PAQ 228
[Close]
BLAST of Spo11248.1 vs. UniProtKB/TrEMBL
Match: A0A068U719_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017685001 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.500e-24
Identity = 74/195 (37.95%), Postives = 110/195 (56.41%), Query Frame = 1 

		  

Query: 11  SLSHHTLTLIRTQSHHHHQLRH--FAKYTPYKPLPKPKVHQKLRAIKTLKSHLQDSYLIS 70
           SL +H      T  HHHH  R   FA  T    + + K   K   ++++K  LQ  YLI+
Sbjct: 26  SLKYHFRNPFLTTHHHHHHCRRPKFAPLTIRSAISRTK---KEETVESVKRQLQGCYLIA 85

Query: 71  PFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALGSCMKGMNSLLF 130
                GF+  +F+ L+  LP    ++KL+  KN+LV +A  GTQ+EAL  CMKGMN+ LF
Sbjct: 86  GIGYKGFTVKQFQELRRQLPE---SSKLLVAKNTLVYKAIEGTQWEALKPCMKGMNAWLF 145

Query: 131 VKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHLDLEVFQNTPSKMEAHGMVL 190
           V  E+ +   +   +   +E KLE NDF GAV  G+LYG  + +  ++ PS+ E +  +L
Sbjct: 146 VHSEE-IPAAIKPYREFQREQKLEGNDFTGAVFEGKLYGPEEFKALESLPSRAEIYAKIL 205

Query: 191 GSLFGPSSTLMAVLE 204
           GSL GP+S ++  L+
Sbjct: 206 GSLKGPASAVVGTLQ 213
[Close]
BLAST of Spo11248.1 vs. UniProtKB/TrEMBL
Match: M1D622_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400032570 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.700e-21
Identity = 57/155 (36.77%), Postives = 94/155 (60.65%), Query Frame = 1 

		  

Query: 49  QKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAF 108
           +K   ++T+K  L+D YL++     G +  +F+ L+  LP      KL+  KN+LV +A 
Sbjct: 54  KKEETVETVKQQLEDCYLLAGISYKGLTVKQFQDLRAQLPE---TTKLLVAKNTLVLKAI 113

Query: 109 AGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGH 168
            GT++EAL  CMKGMN+ LFV  E+ +   +   ++ ++E KLE NDF G V  G+ YG 
Sbjct: 114 EGTKWEALKPCMKGMNAWLFVHSEE-IPAALKPYRTFLREKKLEENDFTGGVFEGKFYGP 173

Query: 169 LDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLE 204
            + +V +N P++ E +  +LGSL GP+S ++  ++
Sbjct: 174 DEFKVLENLPTRAEIYSQLLGSLKGPASAVVGTIQ 204
[Close]
BLAST of Spo11248.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E862_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045880 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.000e-21
Identity = 61/160 (38.12%), Postives = 91/160 (56.88%), Query Frame = 1 

		  

Query: 49  QKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAF 108
           +K   ++T+KSHL++ YL++     GF+  +F+ L+  LP      KLV  KN+LV +A 
Sbjct: 54  KKEETVETVKSHLENCYLVAAINYKGFTVKQFQELRKALPE---TTKLVVAKNTLVEKAV 113

Query: 109 AGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGH 168
             TQ+EA+  CMKGMN+ LFV  E+  G  +   ++  KE KLE NDF GA   G+ YG 
Sbjct: 114 ENTQWEAIKPCMKGMNAWLFVHTEEIPG-ALKPYRTFQKEKKLEDNDFTGACFEGKFYGP 173

Query: 169 LDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLEGFCAD 209
            D +  +  PS+ + +  +LGSL  P   L+  L+    D
Sbjct: 174 EDFKGLETMPSRADVYAKLLGSLKTPGIALVGTLQAPARD 209
[Close]
BLAST of Spo11248.1 vs. ExPASy Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.000e-21
Identity = 72/214 (33.64%), Postives = 113/214 (52.80%), Query Frame = 1 

		  

Query: 1   MGATISTTTTSLSHHTLTLIRTQSHHHHQLRHFAKYTPYKPLPKPKVH-----------Q 60
           M AT  T  +S SH     ++  SH ++ L       P  P  KPK             +
Sbjct: 1   MEATFFTLPSSTSHSYPFSLK--SHFNNSLT-----LPTHPHFKPKSKNLTIRSAISRTK 60

Query: 61  KLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFA 120
           K   ++T+K  L+D YL++     G +  +F+ L++ LP      KL+  KN+LV +A  
Sbjct: 61  KEETVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPD---TTKLLVAKNTLVLKAIE 120

Query: 121 GTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYGHL 180
           GT++EAL  CMKGMN+ LFV  E+ +   +   ++  KE KLE NDF GAV  G+ YG  
Sbjct: 121 GTKWEALKPCMKGMNAWLFVHSEE-IPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPE 180

Query: 181 DLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLE 204
           + +  +  P++ E +  +LGSL GP+S ++  ++
Sbjct: 181 EFKALETLPTRAEIYAQLLGSLKGPASAVVGTIQ 203
[Close]
BLAST of Spo11248.1 vs. ExPASy Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.900e-21
Identity = 56/156 (35.90%), Postives = 92/156 (58.97%), Query Frame = 1 

		  

Query: 48  HQKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQA 107
           ++K   ++ +KSHL++ +L++     G +  +F+ L+  LP      KL+  KN+LV +A
Sbjct: 46  NKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPD---TTKLIVAKNTLVFKA 105

Query: 108 FAGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYG 167
             GT++EAL  CMKGMN+ LFV + D +   +   +S  KE KLE NDF GAV  G+ Y 
Sbjct: 106 IEGTKWEALKPCMKGMNAWLFV-QTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYA 165

Query: 168 HLDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLE 204
             + +V +  P++ E +  +LG+L  P+  L+  L+
Sbjct: 166 PDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQ 197
[Close]
BLAST of Spo11248.1 vs. TAIR (Arabidopsis)
Match: AT5G13510.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.200e-22
Identity = 56/156 (35.90%), Postives = 92/156 (58.97%), Query Frame = 1 

		  

Query: 48  HQKLRAIKTLKSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQA 107
           ++K   ++ +KSHL++ +L++     G +  +F+ L+  LP      KL+  KN+LV +A
Sbjct: 46  NKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPD---TTKLIVAKNTLVFKA 105

Query: 108 FAGTQFEALGSCMKGMNSLLFVKKEDAVGPVMGGVKSAVKEGKLEFNDFPGAVVNGQLYG 167
             GT++EAL  CMKGMN+ LFV + D +   +   +S  KE KLE NDF GAV  G+ Y 
Sbjct: 106 IEGTKWEALKPCMKGMNAWLFV-QTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYA 165

Query: 168 HLDLEVFQNTPSKMEAHGMVLGSLFGPSSTLMAVLE 204
             + +V +  P++ E +  +LG+L  P+  L+  L+
Sbjct: 166 PDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQ 197
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BLAST of Spo11248.1 vs. TAIR (Arabidopsis)
Match: AT3G12370.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 85.5 bits (210), Expect = 4.800e-17
Identity = 57/162 (35.19%), Postives = 93/162 (57.41%), Query Frame = 1 

		  

Query: 58  KSHLQDSYLISPFPCHGFSANKFKPLKTPLPSDPSAAKLVFVKNSLVSQAFAGTQFEALG 117
           K +L++ + I+    +G S  + + L+  L  + +  KL+  KN+LV +A  GT++E+L 
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNT-KLLVAKNTLVYKALEGTKWESLK 74

Query: 118 SCMKGMNSLLFVKKEDAVGPVMGGVKSAV---KEGKLEFNDFPGAVVNGQLYGHLDLEVF 177
            CMKGMN+ LFV+ ED    +   +K+ +   KE KL  N+  GAV   +LY   D +V 
Sbjct: 75  PCMKGMNAWLFVQSED----IPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVI 134

Query: 178 QNTPSKMEAHGMVLGSLFGPSSTLMAVLEGFCADDSANEAAT 217
           +  PS+ + +GM+LGSL  P+  L+  L+   A  +A+E  T
Sbjct: 135 ETMPSRADVYGMMLGSLHWPALDLVNALQ---APPAASENET 168
The following BLAST results are available for this feature:
BLAST of Spo11248.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902205553|gb|KNA15196.1|3.1e-127100.hypothetical protein SOVF_1005... [more]
gi|731338204|ref|XP_010680202.1|4.5e-10283.4PREDICTED: 50S ribosomal prote... [more]
gi|661892104|emb|CDP04330.1|6.5e-2437.9unnamed protein product [Coffe... [more]
gi|565387093|ref|XP_006359339.1|3.9e-2136.7PREDICTED: 50S ribosomal prote... [more]
gi|731362825|ref|XP_010693095.1|1.1e-2038.1PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo11248.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R6Q7_SPIOL2.2e-127100.Uncharacterized protein OS=Spi... [more]
A0A0J8C5X2_BETVU3.2e-10283.4Uncharacterized protein OS=Bet... [more]
A0A068U719_COFCA4.5e-2437.9Uncharacterized protein OS=Cof... [more]
M1D622_SOLTU2.7e-2136.7Uncharacterized protein OS=Sol... [more]
A0A0J8E862_BETVU8.0e-2138.1Uncharacterized protein OS=Bet... [more]
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BLAST of Spo11248.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK10_TOBAC3.0e-2133.650S ribosomal protein L10, chl... [more]
RK10_ARATH3.9e-2135.950S ribosomal protein L10, chl... [more]
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BLAST of Spo11248.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G13510.12.2e-2235.9Ribosomal protein L10 family p... [more]
AT3G12370.14.8e-1735.1Ribosomal protein L10 family p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 49..135
score: 5.1
NoneNo IPR availablePANTHERPTHR11560FAMILY NOT NAMEDcoord: 49..203
score: 8.8
NoneNo IPR availableunknownSSF160369Ribosomal protein L10-likecoord: 48..205
score: 2.88

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0044424 intracellular part
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0030246 carbohydrate binding
RNA-Seq Expression