Spo11258 (gene)

Overview
NameSpo11258
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING/U-box superfamily protein, putative
LocationSpoScf_02284 : 37435 .. 37770 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGTAGTTGTACCCTTAACTCATGCTCCTCACTTCATCAAGCATTTGACCTTGATGAAGCTCTAAATACACAACCTACACCATCGAATATCATCTCCATTGATCACGTCGTCATGGTGGCACCAAAACATTCTTCCCCGGTAACACGGGTGGCCGATTTGCCTACGGTTACCGCCAGGATCAATGCCATTTGCTCGGTATGTATGGAAGGTTACCGACGGCTGGCTAAGCGAATGCCATGTGGACACGTGTTCCATGCTACTTGTATTGCCCCTTGGCTATCTATTAGTAATTCTTGCCCGCTTTGCCGTACTCTTGTCCTTGATAGTTAA

mRNA sequence

ATGATGAGTAGTTGTACCCTTAACTCATGCTCCTCACTTCATCAAGCATTTGACCTTGATGAAGCTCTAAATACACAACCTACACCATCGAATATCATCTCCATTGATCACGTCGTCATGGTGGCACCAAAACATTCTTCCCCGGTAACACGGGTGGCCGATTTGCCTACGGTTACCGCCAGGATCAATGCCATTTGCTCGGTATGTATGGAAGGTTACCGACGGCTGGCTAAGCGAATGCCATGTGGACACGTGTTCCATGCTACTTGTATTGCCCCTTGGCTATCTATTAGTAATTCTTGCCCGCTTTGCCGTACTCTTGTCCTTGATAGTTAA

Coding sequence (CDS)

ATGATGAGTAGTTGTACCCTTAACTCATGCTCCTCACTTCATCAAGCATTTGACCTTGATGAAGCTCTAAATACACAACCTACACCATCGAATATCATCTCCATTGATCACGTCGTCATGGTGGCACCAAAACATTCTTCCCCGGTAACACGGGTGGCCGATTTGCCTACGGTTACCGCCAGGATCAATGCCATTTGCTCGGTATGTATGGAAGGTTACCGACGGCTGGCTAAGCGAATGCCATGTGGACACGTGTTCCATGCTACTTGTATTGCCCCTTGGCTATCTATTAGTAATTCTTGCCCGCTTTGCCGTACTCTTGTCCTTGATAGTTAA

Protein sequence

MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11258.1Spo11258.1mRNA


Homology
[Close]
BLAST of Spo11258.1 vs. NCBI nr
Match: gi|902153249|gb|KNA05681.1| (hypothetical protein SOVF_188010 [Spinacia oleracea])

HSP 1 Score: 229.6 bits (584), Expect = 2.700e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

		  

Query: 1   MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTA 60
           MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTA
Sbjct: 1   MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTA 60

Query: 61  RINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS 112
           RINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS
Sbjct: 61  RINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS 111
[Close]
BLAST of Spo11258.1 vs. NCBI nr
Match: gi|870851127|gb|KMT03193.1| (hypothetical protein BVRB_8g197420 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 127.1 bits (318), Expect = 1.900e-26
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 1 

		  

Query: 6   TLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARINAI 65
           TL S SS HQAFDLDEAL T P     ++I     +A   S PVTR+ADLPTVTA  + +
Sbjct: 4   TLFSYSSTHQAFDLDEAL-TMP-----LNISPNQRLAAPDSGPVTRLADLPTVTAGNDVV 63

Query: 66  CSVCMEGY-RRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVL 110
           CS+CMEGY RR AKRMPCGHV+H TCIAPWL ISNSCPLCR  VL
Sbjct: 64  CSICMEGYFRRSAKRMPCGHVYHTTCIAPWLPISNSCPLCRCHVL 102
[Close]
BLAST of Spo11258.1 vs. NCBI nr
Match: gi|470105025|ref|XP_004288889.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 85.9 bits (211), Expect = 4.900e-14
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 1 

		  

Query: 7   LNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPV-TRVADLPTVTARINAI 66
           L+    +   FDLD+AL     P N        + +P+  S     VADLPTV A    I
Sbjct: 10  LSDAYGIDLCFDLDDALTL---PGNEDGYRTSSITSPESDSAGDASVADLPTVAAAEGVI 69

Query: 67  CSVCMEGYRR-------LAKRMPCGHVFHATCIAPWLSISNSCPLCRTLV 109
           CSVC+EG+R          K++PCGHV+H TCIA WLS SNSCPLCR+ V
Sbjct: 70  CSVCVEGFRAEEEGGGGRGKQVPCGHVYHETCIAKWLSHSNSCPLCRSTV 116
[Close]
BLAST of Spo11258.1 vs. NCBI nr
Match: gi|658005059|ref|XP_008337662.1| (PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Malus domestica])

HSP 1 Score: 80.1 bits (196), Expect = 2.700e-12
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1 

		  

Query: 1   MMSSCTLNSCSSLH---QAFDLDEALNTQ-PTPSNIISIDHVVMVAPKHSSPVTRVAD-L 60
           + S   LN+ S+ H     FDLDEAL       SN +  ++  ++A  +S   + + D +
Sbjct: 4   VFSGQLLNTISNYHIDLDEFDLDEALTLSFEENSNSVHCBNNSIIATSNSXCSSLIVDCM 63

Query: 61  PTVTARINAICSVCMEGYRR---------LAKRMPCGHVFHATCIAPWLSISNSCPLCRT 107
           P+    ++ +C+VCMEG +          + K++PCGHV+HATCI+ WL + NSCPLCR+
Sbjct: 64  PSPVTAVDDVCAVCMEGMQSGGDQQDHSIIGKQVPCGHVYHATCISSWLIVCNSCPLCRS 123
[Close]
BLAST of Spo11258.1 vs. NCBI nr
Match: gi|694323234|ref|XP_009352695.1| (PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Pyrus x bretschneideri])

HSP 1 Score: 79.7 bits (195), Expect = 3.500e-12
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 1 

		  

Query: 7   LNSCSSLH---QAFDLDEALNTQ-PTPSNIISIDHVVMVAPKHSSPVTRVAD-LPTVTAR 66
           +N+ S+ H     FDLDEAL       SN I  ++  ++A  +SS  + + D +P+    
Sbjct: 10  INTISNYHTELDEFDLDEALTLSFEENSNSIHCNNNSIIATSNSSCSSLIVDCMPSPVTA 69

Query: 67  INAICSVCMEGYRR---------LAKRMPCGHVFHATCIAPWLSISNSCPLCRT 107
           ++ +C+VCMEG +            K++PCGHV+HATCI+ WL + NSCPLCR+
Sbjct: 70  VDDVCAVCMEGMQSGGDQQDHSITGKQVPCGHVYHATCISSWLIVCNSCPLCRS 123
[Close]
BLAST of Spo11258.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGJ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188010 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.900e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

		  

Query: 1   MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTA 60
           MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTA
Sbjct: 1   MMSSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTA 60

Query: 61  RINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS 112
           RINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS
Sbjct: 61  RINAICSVCMEGYRRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVLDS 111
[Close]
BLAST of Spo11258.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g197420 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-26
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 1 

		  

Query: 6   TLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARINAI 65
           TL S SS HQAFDLDEAL T P     ++I     +A   S PVTR+ADLPTVTA  + +
Sbjct: 4   TLFSYSSTHQAFDLDEAL-TMP-----LNISPNQRLAAPDSGPVTRLADLPTVTAGNDVV 63

Query: 66  CSVCMEGY-RRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVL 110
           CS+CMEGY RR AKRMPCGHV+H TCIAPWL ISNSCPLCR  VL
Sbjct: 64  CSICMEGYFRRSAKRMPCGHVYHTTCIAPWLPISNSCPLCRCHVL 102
[Close]
BLAST of Spo11258.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEJ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188000 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.200e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1 

		  

Query: 9   SCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARINAICSV 68
           S  S    FDLDEAL+  P  S+ +S          H++ +      P V    +A+CSV
Sbjct: 2   STFSFDGVFDLDEALSMPPLYSSPMSSSF------SHNAVIVTADTFPVVVTSKDAVCSV 61

Query: 69  CMEGY---RRLAKRMPCGHVFHATCIAPWLSISNSCPLCRTLVL 110
           C E +   R   +++PCGHV+HA CI+ WLS+ +SCPLCR  V+
Sbjct: 62  CTEEFEPPRNSGRQIPCGHVYHADCISAWLSVHDSCPLCRVAVV 99
[Close]
BLAST of Spo11258.1 vs. UniProtKB/TrEMBL
Match: A0A067KCF7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.400e-12
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 1 

		  

Query: 4   SCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARIN 63
           S T  S   +  +FD+DEAL   P   + +S+   +            +AD+PTV+   +
Sbjct: 8   SNTAFSTCLIDVSFDMDEALTLPPNFGHQVSVSESL------------IADMPTVSTDHD 67

Query: 64  AICSVCMEGYR--RLAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
             CS+CME +   R  KR+PCGHV+HA CI+ WLS  NSCPLCR
Sbjct: 68  T-CSICMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCR 98
[Close]
BLAST of Spo11258.1 vs. UniProtKB/TrEMBL
Match: B9RKI4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049910 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.100e-12
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1 

		  

Query: 3   SSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARI 62
           S+ T ++C  +  +FD+DEAL   P   + IS    +            VAD+PTVT+  
Sbjct: 8   SNSTFSTCL-IDVSFDMDEALALPPNFGHQISESDSL------------VADMPTVTSTD 67

Query: 63  NA-ICSVCMEGYRR---LAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
           +  +CS+CMEG++      K++PCGHV+HA CI+ WLS  NSCPLCR
Sbjct: 68  DHDVCSICMEGFQSPGVCGKQVPCGHVYHAPCISSWLSNCNSCPLCR 101
[Close]
BLAST of Spo11258.1 vs. ExPASy Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-8
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 

		  

Query: 46  SSPVTRVADLPTVTARINAICSVCMEGYRR--LAKRMPCGHVFHATCIAPWLSISNSCPL 105
           S P   ++D  T   +  A C+VC E +      + MPC H+FH  CI PWLSI NSCP+
Sbjct: 198 SLPRVEISDCHT---KAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPV 256
[Close]
BLAST of Spo11258.1 vs. ExPASy Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-8
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 

		  

Query: 66  CSVCMEGY--RRLAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
           C+VC E +  +  A+ MPC H++H  CI PWL+I NSCP+CR
Sbjct: 201 CAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCR 242
[Close]
BLAST of Spo11258.1 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.000e-8
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 

		  

Query: 51  RVADLPTVTARINAI-----CSVCMEGY--RRLAKRMPCGHVFHATCIAPWLSISNSCPL 106
           ++  LPTVT     +     C VC E Y      +++PC H FH++CI PWL + ++CP+
Sbjct: 209 KITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPV 268
[Close]
BLAST of Spo11258.1 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 5.200e-8
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 

		  

Query: 51  RVADLPTVTARINAI-----CSVCMEGY--RRLAKRMPCGHVFHATCIAPWLSISNSCPL 106
           ++  LPTVT     +     C VC E Y      +++PC H FH++CI PWL + ++CP+
Sbjct: 208 KITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPV 267
[Close]
BLAST of Spo11258.1 vs. ExPASy Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.800e-8
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 

		  

Query: 64  AICSVCMEGYRRL--AKRMPCGHVFHATCIAPWLSISNSCPLCR 106
           A C+VC E +     A+ MPC H+FH  CI PWLSI NSCP+CR
Sbjct: 197 ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCR 240
[Close]
BLAST of Spo11258.1 vs. TAIR (Arabidopsis)
Match: AT4G26400.2 (RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.600e-10
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 

		  

Query: 52  VADLPTVTARINAICSVCMEGYRR--LAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
           V +LPTV    +  CS+C++ + +   AK MPC H FH  CI PWL + +SCP+CR
Sbjct: 227 VDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCR 282
[Close]
BLAST of Spo11258.1 vs. TAIR (Arabidopsis)
Match: AT5G56340.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.900e-10
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 

		  

Query: 52  VADLPTVTARINAICSVCMEGYRR--LAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
           V  LPTV       CSVC++ + +   AK MPC H FH  CI PWL + +SCP+CR
Sbjct: 245 VEALPTVKIMEPLQCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCR 300
[Close]
BLAST of Spo11258.1 vs. TAIR (Arabidopsis)
Match: AT3G60080.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.000e-9
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 1 

		  

Query: 3   SSCTLNSCSSLHQAFDLDEALNTQPTPSNIISIDHVVMVAPKHSSPVTRVADLPTVTARI 62
           SS + +S SSL ++ D+D     Q + S + S D         S P + +          
Sbjct: 126 SSSSSSSSSSLLKSSDIDSIPTIQISSSLLCSTDD--------SDPDSVL---------- 185

Query: 63  NAICSVCMEGY--RRLAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
             +C+VC E +     A+R+PC H++H+ CI PWLS  NSCPLCR
Sbjct: 186 --LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210
[Close]
BLAST of Spo11258.1 vs. TAIR (Arabidopsis)
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.000e-9
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 

		  

Query: 46  SSPVTRVADLPTVTARINAICSVCMEGYRR--LAKRMPCGHVFHATCIAPWLSISNSCPL 105
           S P   ++D  T   +  A C+VC E +      + MPC H+FH  CI PWLSI NSCP+
Sbjct: 198 SLPRVEISDCHT---KAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPV 256
[Close]
BLAST of Spo11258.1 vs. TAIR (Arabidopsis)
Match: AT2G39720.1 (RING-H2 finger C2A)

HSP 1 Score: 59.7 bits (143), Expect = 1.300e-9
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 

		  

Query: 66  CSVCMEGY--RRLAKRMPCGHVFHATCIAPWLSISNSCPLCR 106
           C+VC E +  +  A+ MPC H++H  CI PWL+I NSCP+CR
Sbjct: 201 CAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCR 242
The following BLAST results are available for this feature:
BLAST of Spo11258.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902153249|gb|KNA05681.1|2.7e-57100.hypothetical protein SOVF_1880... [more]
gi|870851127|gb|KMT03193.1|1.9e-2665.7hypothetical protein BVRB_8g19... [more]
gi|470105025|ref|XP_004288889.1|4.9e-1445.4PREDICTED: E3 ubiquitin-protei... [more]
gi|658005059|ref|XP_008337662.1|2.7e-1236.6PREDICTED: E3 ubiquitin-protei... [more]
gi|694323234|ref|XP_009352695.1|3.5e-1238.6PREDICTED: E3 ubiquitin-protei... [more]
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BLAST of Spo11258.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QGJ9_SPIOL1.9e-57100.Uncharacterized protein OS=Spi... [more]
A0A0J8BTG3_BETVU1.3e-2665.7Uncharacterized protein OS=Bet... [more]
A0A0K9QEJ2_SPIOL4.2e-1239.4Uncharacterized protein OS=Spi... [more]
A0A067KCF7_JATCU5.4e-1241.3Uncharacterized protein OS=Jat... [more]
B9RKI4_RICCO7.1e-1242.0Putative uncharacterized prote... [more]
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BLAST of Spo11258.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RDUF1_ARATH1.8e-845.1E3 ubiquitin-protein ligase RD... [more]
RHC2A_ARATH2.3e-852.3Probable E3 ubiquitin-protein ... [more]
RN115_MOUSE4.0e-838.7E3 ubiquitin-protein ligase RN... [more]
RN115_HUMAN5.2e-838.7E3 ubiquitin-protein ligase RN... [more]
RDUF2_ARATH6.8e-856.8E3 ubiquitin-protein ligase RD... [more]
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BLAST of Spo11258.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G26400.24.6e-1046.4RING/U-box superfamily protein[more]
AT5G56340.15.9e-1048.2RING/U-box superfamily protein[more]
AT3G60080.11.0e-935.2RING/U-box superfamily protein[more]
AT3G46620.11.0e-945.1zinc finger (C3HC4-type RING f... [more]
AT2G39720.11.3e-952.3RING-H2 finger C2A[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 66..105
score: 1.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 66..104
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 66..105
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 64..108
score: 9.7
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 50..108
score: 1.9
NoneNo IPR availablePANTHERPTHR22763:SF87SUBFAMILY NOT NAMEDcoord: 50..108
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 65..109
score: 8.62

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression