Spo11314 (gene) | SpinachBase

Overview


Name	Spo11314
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Tetratricopeptide repeat protein 13
Location	SpoScf_02168 : 476 .. 759 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCTCTGCCTTTCAGTGAAGAGTTCAATGCTGGTTTTGGGTCCCATACTCCACTCATTCTAGGACAAGCAAAAGTTGTCCGCTATTTCCCTAACTTCAACAGGTAATATGATATCCTTCTGCCTTCTAATGTAGACTGAAGCCTCTGGTGACACCCCTTTTTGATTTTCTGTACCTCAGAACCCTTGATGCTGCCAAGGCTGCAATAAAGGAAAAGAAATATGCATGCAGCAAGGCAGATGCTGTTATCAACTTATCTGACAACAGAAAATTGCAAGAT

mRNA sequence

ATGACTTCTCTGCCTTTCAGTGAAGAGTTCAATGCTGGTTTTGGGTCCCATACTCCACTCATTCTAGGACAAGCAAAAGTTGTCCGCTATTTCCCTAACTTCAACAGACTGAAGCCTCTGGTGACACCCCTTTTTGATTTTCTGTACCTCAGAACCCTTGATGCTGCCAAGGCTGCAATAAAGGAAAAGAAATATGCATGCAGCAAGGCAGATGCTGTTATCAACTTATCTGACAACAGAAAATTGCAAGAT

Coding sequence (CDS)

ATGACTTCTCTGCCTTTCAGTGAAGAGTTCAATGCTGGTTTTGGGTCCCATACTCCACTCATTCTAGGACAAGCAAAAGTTGTCCGCTATTTCCCTAACTTCAACAGACTGAAGCCTCTGGTGACACCCCTTTTTGATTTTCTGTACCTCAGAACCCTTGATGCTGCCAAGGCTGCAATAAAGGAAAAGAAATATGCATGCAGCAAGGCAGATGCTGTTATCAACTTATCTGACAACAGAAAATTGCAAGAT

Protein sequence

MTSLPFSEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYACSKADAVINLSDNRKLQD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11314.1	Spo11314.1	mRNA

Homology

[Close]

BLAST of Spo11314.1 vs. NCBI nr
Match: gi|902213325|gb|KNA17244.1| (hypothetical protein SOVF_081470, partial [Spinacia oleracea])

HSP 1 Score: 118.6 bits (296), Expect = 5.200e-24
Identity = 63/78 (80.77%), Postives = 63/78 (80.77%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFNAGFGSHTPLILGQAKVVRYFPNFNR               TLDAAKAAIKEKKYA
Sbjct: 686 SEEFNAGFGSHTPLILGQAKVVRYFPNFNR---------------TLDAAKAAIKEKKYA 745

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKADAVINLSDNRKLQD
Sbjct: 746 CSKADAVINLSDNRKLQD 748

[Close]

BLAST of Spo11314.1 vs. NCBI nr
Match: gi|731337036|ref|XP_010679576.1| (PREDICTED: suppressor of RPS4-RLD 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.5 bits (267), Expect = 1.200e-20
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFNAGFGSHTPLILGQA+VVRYFPNF+               RTL+AAKAAIKEKKYA
Sbjct: 765 SEEFNAGFGSHTPLILGQARVVRYFPNFH---------------RTLNAAKAAIKEKKYA 824

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKAD VINLSD+ KLQD
Sbjct: 825 CSKADVVINLSDDGKLQD 827

[Close]

BLAST of Spo11314.1 vs. NCBI nr
Match: gi|802645495|ref|XP_012079354.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X2 [Jatropha curcas])

HSP 1 Score: 90.5 bits (223), Expect = 1.500e-15
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTPLILGQAKVVRY+PNF                RTL+AAK  +K+K Y 
Sbjct: 831 SEEFNSGFGSHTPLILGQAKVVRYYPNFE---------------RTLNAAKTIMKDKLYV 890

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKAD +I++S + KLQD
Sbjct: 891 CSKADEIIDISKDEKLQD 893

[Close]

BLAST of Spo11314.1 vs. NCBI nr
Match: gi|802645491|ref|XP_012079353.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X1 [Jatropha curcas])

HSP 1 Score: 90.5 bits (223), Expect = 1.500e-15
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTPLILGQAKVVRY+PNF                RTL+AAK  +K+K Y 
Sbjct: 841 SEEFNSGFGSHTPLILGQAKVVRYYPNFE---------------RTLNAAKTIMKDKLYV 900

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKAD +I++S + KLQD
Sbjct: 901 CSKADEIIDISKDEKLQD 903

[Close]

BLAST of Spo11314.1 vs. NCBI nr
Match: gi|567866821|ref|XP_006426033.1| (hypothetical protein CICLE_v10024760mg [Citrus clementina])

HSP 1 Score: 89.4 bits (220), Expect = 3.300e-15
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTP+ILGQAKVVRYFPN               Y RTLD AK  +K+KKY 
Sbjct: 837 SEEFNSGFGSHTPMILGQAKVVRYFPN---------------YARTLDVAKTVMKDKKYV 896

Query: 67  CSKADAVINLSDNRKLQD 85
            +KAD +I+LS++ KLQD
Sbjct: 897 HNKADDIIDLSEDGKLQD 899

[Close]

BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_081470 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.600e-24
Identity = 63/78 (80.77%), Postives = 63/78 (80.77%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFNAGFGSHTPLILGQAKVVRYFPNFNR               TLDAAKAAIKEKKYA
Sbjct: 686 SEEFNAGFGSHTPLILGQAKVVRYFPNFNR---------------TLDAAKAAIKEKKYA 745

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKADAVINLSDNRKLQD
Sbjct: 746 CSKADAVINLSDNRKLQD 748

[Close]

BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C7V6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127700 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.300e-21
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFNAGFGSHTPLILGQA+VVRYFPNF+               RTL+AAKAAIKEKKYA
Sbjct: 765 SEEFNAGFGSHTPLILGQARVVRYFPNFH---------------RTLNAAKAAIKEKKYA 824

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKAD VINLSD+ KLQD
Sbjct: 825 CSKADVVINLSDDGKLQD 827

[Close]

BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
Match: A0A067KJM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12495 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.000e-15
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTPLILGQAKVVRY+PNF                RTL+AAK  +K+K Y 
Sbjct: 831 SEEFNSGFGSHTPLILGQAKVVRYYPNFE---------------RTLNAAKTIMKDKLYV 890

Query: 67  CSKADAVINLSDNRKLQD 85
           CSKAD +I++S + KLQD
Sbjct: 891 CSKADEIIDISKDEKLQD 893

[Close]

BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
Match: V4SFD3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024760mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.300e-15
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTP+ILGQAKVVRYFPN               Y RTLD AK  +K+KKY 
Sbjct: 842 SEEFNSGFGSHTPMILGQAKVVRYFPN---------------YARTLDVAKTVMKDKKYV 901

Query: 67  CSKADAVINLSDNRKLQD 85
            +KAD +I+LS++ KLQD
Sbjct: 902 HNKADDIIDLSEDGKLQD 904

[Close]

BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
Match: V4RWP8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024760mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.300e-15
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTP+ILGQAKVVRYFPN               Y RTLD AK  +K+KKY 
Sbjct: 837 SEEFNSGFGSHTPMILGQAKVVRYFPN---------------YARTLDVAKTVMKDKKYV 896

Query: 67  CSKADAVINLSDNRKLQD 85
            +KAD +I+LS++ KLQD
Sbjct: 897 HNKADDIIDLSEDGKLQD 899

[Close]

BLAST of Spo11314.1 vs. ExPASy Swiss-Prot
Match: SRFR1_ARATH (Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.100e-13
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTP++LGQAKVVRYFPN               Y RTL  AK+ IK+K   
Sbjct: 787 SEEFNSGFGSHTPMVLGQAKVVRYFPN---------------YERTLTLAKSIIKDKLSV 846

Query: 67  CSKADAVINLSDNRKLQ 84
            SK D VI+LS + K++
Sbjct: 847 RSKKDKVIDLSKDEKIE 848

[Close]

BLAST of Spo11314.1 vs. TAIR (Arabidopsis)
Match: AT4G37460.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.800e-14
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 1


		  
Query: 7   SEEFNAGFGSHTPLILGQAKVVRYFPNFNRLKPLVTPLFDFLYLRTLDAAKAAIKEKKYA 66
           SEEFN+GFGSHTP++LGQAKVVRYFPN               Y RTL  AK+ IK+K   
Sbjct: 787 SEEFNSGFGSHTPMVLGQAKVVRYFPN---------------YERTLTLAKSIIKDKLSV 846

Query: 67  CSKADAVINLSDNRKLQ 84
            SK D VI+LS + K++
Sbjct: 847 RSKKDKVIDLSKDEKIE 848

The following BLAST results are available for this feature:

BLAST of Spo11314.1 vs. NCBI nr
BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
BLAST of Spo11314.1 vs. ExPASy Swiss-Prot
BLAST of Spo11314.1 vs. TAIR (Arabidopsis)

BLAST of Spo11314.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902213325\|gb\|KNA17244.1\|	5.2e-24	80.7	hypothetical protein SOVF_0814...	[more]
gi\|731337036\|ref\|XP_010679576.1\|	1.2e-20	73.0	PREDICTED: suppressor of RPS4-...	[more]
gi\|802645495\|ref\|XP_012079354.1\|	1.5e-15	58.9	PREDICTED: suppressor of RPS4-...	[more]
gi\|802645491\|ref\|XP_012079353.1\|	1.5e-15	58.9	PREDICTED: suppressor of RPS4-...	[more]
gi\|567866821\|ref\|XP_006426033.1\|	3.3e-15	58.9	hypothetical protein CICLE_v10...	[more]

BLAST of Spo11314.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RE25_SPIOL	3.6e-24	80.7	Uncharacterized protein (Fragm...	[more]
A0A0J8C7V6_BETVU	8.3e-21	73.0	Uncharacterized protein OS=Bet...	[more]
A0A067KJM3_JATCU	1.0e-15	58.9	Uncharacterized protein OS=Jat...	[more]
V4SFD3_9ROSI	2.3e-15	58.9	Uncharacterized protein OS=Cit...	[more]
V4RWP8_9ROSI	2.3e-15	58.9	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo11314.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
SRFR1_ARATH	3.1e-13	53.2	Suppressor of RPS4-RLD 1 OS=Ar...	[more]

BLAST of Spo11314.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G37460.1	1.8e-14	53.2	Tetratricopeptide repeat (TPR)...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23083	TETRATRICOPEPTIDE REPEAT PROTEIN, TPR	coord: 6..35 score: 1.0E-23coord: 51..84 score: 1.0
None	No IPR available	PANTHER	PTHR23083:SF443	SUBFAMILY NOT NAMED	coord: 6..35 score: 1.0E-23coord: 51..84 score: 1.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006423	cysteinyl-tRNA aminoacylation
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0010167	response to nitrate
biological_process	GO:0009408	response to heat
biological_process	GO:0015706	nitrate transport
biological_process	GO:0006826	iron ion transport
biological_process	GO:0010106	cellular response to iron ion starvation
biological_process	GO:0006952	defense response
biological_process	GO:0006534	cysteine metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010629	negative regulation of gene expression
biological_process	GO:0009845	seed germination
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0016174	NAD(P)H oxidase activity
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004817	cysteine-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0008131	primary amine oxidase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0000166	nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05908	0.70	Barchart \| Table
Spo07141	0.69	Barchart \| Table
Spo06343	0.67	Barchart \| Table
Spo05601	0.67	Barchart \| Table
Spo20925	0.66	Barchart \| Table
Spo18244	0.65	Barchart \| Table
Spo21677	0.65	Barchart \| Table