Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAGTTGTCCTCTATATAAAGGTTGGTGTGATCCTCATTTTATTACTCATTTGCTCTATCTTTTTATAACTTTTTATTGTTATTTGAGAGAACCCTTCACTTCATTCTTTCTCTAGCTAGCTCATTAGTACGTGGTTGTGGTCGTGGTCGTGGTTGTGATCGTGGTGCTAATACGAGTTTACAGTATGGGTAGACAACCTTGTTGTGACAAACTAGGGGTGAAAAAAGGCCCGTGGACGGCCGAGGAAGATAAGAAGCTTATCAATTTTATTCTTACTAATGGTCAATGTTGTTGGAGGGCGGTTCCTAAACTCGCCGGACTTCGGCGATGTGGTAAGAGTTGCCGTCTCCGATGGACTAATTATCTCCGACCGGATTTGAAACGTGGCCTTCTTAGTGATGCCGAAGAACAATTGGTTATTGACCTTCATGCCCGATTGGGAAATAGGTACGTAAGATTGTTTACAACAAAAAGTACTTTTATTTTTTAAAATATATACAATACGTGATAAAGATATTAATGGTTAAAAGATATTAATGGTTAAAGTAATTAAACTTATAAAATAAAATATAAATTGTGAAAGATTGCTATTGATCGAGTGCTCATGAAACCACTATACTTTCATCGTTTTTAATTGTTCCTTAAACAATTTATATTTCAAAATGATGACATTTGCATAATGGTAATGAAGTTGTCACACCTAAGAAATACAATTAGATACAAATTAAAGTACTAAAAGTCTAAAAGCTACTTCTTCTCATTGACAATAATACTATTGTATACATCTTTGAAATATCATAATTTACTAAGTTCATACTCTCATTTAGCATTACTATTATTATTTGAATTAGTAACGTGACAACTAAATTGAGATGATAGTGATTTTTTACAGTGTATATATACAAGATAAGTATTCTTTATTGAAGTAACTTTTAAGTAAATAAATCACCTAATTAACTTTGCATGAACACGACTAGTAGCTAGTTAGTACACATGCAGTTTCTTGTTAATCTTATTGAAGAAAACCATGACTTATTGCACTAATTAAGTAATCATGTCTATGAACAATAACAATGCTTTTTAAGGGCTTTTCTTTAAAAAAATTATTTTATTTTTGATGCGGAAAAACTTGTCTTCGAATTCCCCAAGTTTATACTCCCTCTGTTTCTTAATAGTTGCAACTTAATTCTTGTCTCTTTCTATGTTTCATCGCTCTTTTAGCATGAAACTACTAATTCTGTATTGTTACTCTCTCCTTTTTACCCCCGCTTGCACAAATTTTTATCTTTCAGTCACACAAACAATTAAAGTATCACATTTAACTGCACTTGCACATTATTTTATTCATTTTCACGTACTACTTTAAATATTCCTAAAACTACGCAAACATAAGTGTTGCGAATATTCTGAAACGGATGCAGTATCTTTTTTTAAAATTTGGATATTATTTTTAATTCAGAACTTTTTGGAATATAGTTTTCTCTTTATATTCCTTTTTGCCCTTGTTATCTTTTGCCTCCCGCGTGGAGAAAATATAGCATGTATGACAATGACGTACGTAGTATAACAAAAGTTAATTATATGCACATTTTGCTAATTATGTTACTCTTACTAATTAATGGCATTTTAAATCTATCATAATATCAGGTGGTCCAAAATTGCTGCAAGATTGCCAGGAAGAACAGACAACGAGATCAAGAATCATTGGAACACCCACATCAAGAAAAAACTCATTAAGATGGGAATCGACCCGATTACCCATGAACCATTAAACAAATCGGATCAATCCCCAAATACTCAAATTATTACTCCAAACCAATCATCATCTTCCTCTAATAACAACAATAATTCGGATATTAGCACAGCTGAATCCTTAAACCAAACCCAATCATCATCGCCGGAAACCGCTAATAGTTTTCCGGCAATGTCGTCGGAAAACGTTACCAATAATAGTCCTCCTCCTCCGACGACGGAGAATAGCTCGAGTGTTAATGATAATCAATCTAATGACCCGAGTTTAATTGAAGGTATTAACATCGATAATGCGTTAATGAGTTACTTATGGGATGATACTGATGTTACACCATTGGAGTTGCCCTACACGTATAATTGTGACCAACCTTGTTTATCAAGCAATAACGTTGCTAATACGTGGGAAGATAATTATTCGTGGTTATTCGATTGTGAAGATTTTGGTATACAAGATTTTGGGCTTGATTGCTTCAATGACATTGAAATTATGAACACATTGGATGTGTTAGAAATGGGCAACAAGGAATGATATATAATTAATTAGCGTAATGGGTCATTATTGAGACGTTATAATCAGACGACAGTCGAGCACAAAGGTGACCAGAGAAAAAAAAAATGTATGTACGTACGTATCACGTATCACATATCATGTATGTATATGTAGGCATGTATGTCATATGATATGCTACTTGTACAAAATTTAAGTAGCATGTTTCCACGTACATTATTATTATTAGGTTAATTATTTTTCATTTTTATTTTGTGTTTGGACCAGAGAAGTTCTCGGGTGGTTGTTTTTACCCAACCACATGTGAGAATCATACCATACCAAAGCGATACGTACATTCGATCCTGAAATACACCCCTTTACCGAAAAAATCGCTGGCATGAACAATATGGTGAGAATTTATAGTTAAAGAGGTGTATTTTGAAGAATTAGACATCTTTTAGTTATTGCGAGAAATCGATTTAGTGAAAATCCGAAAATAGTCTACTTTTTTTTTAATCGTGTCTGTAAATTATTGTTCAAAAAAAGTTGATGATCGAGGCGCCCTTTTGGCGTGGTCTTCCTGTGCAAAGGAAAGCCTTTGTACATAAAATATGTACCTACCAATTTCATGATGAATAATGATAATTGTTGCTATTTCATAC AGAAAGTTGTCCTCTATATAAAGGTTGGTGTGATCCTCATTTTATTACTCATTTGCTCTATCTTTTTATAACTTTTTATTGTTATTTGAGAGAACCCTTCACTTCATTCTTTCTCTAGCTAGCTCATTAGTACGTGGTTGTGGTCGTGGTCGTGGTTGTGATCGTGGTGCTAATACGAGTTTACAGTATGGGTAGACAACCTTGTTGTGACAAACTAGGGGTGAAAAAAGGCCCGTGGACGGCCGAGGAAGATAAGAAGCTTATCAATTTTATTCTTACTAATGGTCAATGTTGTTGGAGGGCGGTTCCTAAACTCGCCGGACTTCGGCGATGTGGTAAGAGTTGCCGTCTCCGATGGACTAATTATCTCCGACCGGATTTGAAACGTGGCCTTCTTAGTGATGCCGAAGAACAATTGGTTATTGACCTTCATGCCCGATTGGGAAATAGGTGGTCCAAAATTGCTGCAAGATTGCCAGGAAGAACAGACAACGAGATCAAGAATCATTGGAACACCCACATCAAGAAAAAACTCATTAAGATGGGAATCGACCCGATTACCCATGAACCATTAAACAAATCGGATCAATCCCCAAATACTCAAATTATTACTCCAAACCAATCATCATCTTCCTCTAATAACAACAATAATTCGGATATTAGCACAGCTGAATCCTTAAACCAAACCCAATCATCATCGCCGGAAACCGCTAATAGTTTTCCGGCAATGTCGTCGGAAAACGTTACCAATAATAGTCCTCCTCCTCCGACGACGGAGAATAGCTCGAGTGTTAATGATAATCAATCTAATGACCCGAGTTTAATTGAAGGTATTAACATCGATAATGCGTTAATGAGTTACTTATGGGATGATACTGATGTTACACCATTGGAGTTGCCCTACACGTATAATTGTGACCAACCTTGTTTATCAAGCAATAACGTTGCTAATACGTGGGAAGATAATTATTCGTGGTTATTCGATTGTGAAGATTTTGGTATACAAGATTTTGGGCTTGATTGCTTCAATGACATTGAAATTATGAACACATTGGATGTGTTAGAAATGGGCAACAAGGAATGATATATAATTAATTAGCGTAATGGGTCATTATTGAGACGTTATAATCAGACGACAGTCGAGCACAAAGGTGACCAGAGAAAAAAAAAATGTATGTACGTACGTATCACGTATCACATATCATGTATGTATATGTAGGCATGTATGTCATATGATATGCTACTTGTACAAAATTTAAGTAGCATGTTTCCACGTACATTATTATTATTAGGTTAATTATTTTTCATTTTTATTTTGTGTTTGGACCAGAGAAGTTCTCGGGTGGTTGTTTTTACCCAACCACATGTGAGAATCATACCATACCAAAGCGATACGTACATTCGATCCTGAAATACACCCCTTTACCGAAAAAATCGCTGGCATGAACAATATGGTGAGAATTTATAGTTAAAGAGGTGTATTTTGAAGAATTAGACATCTTTTAGTTATTGCGAGAAATCGATTTAGTGAAAATCCGAAAATAGTCTACTTTTTTTTTAATCGTGTCTGTAAATTATTGTTCAAAAAAAGTTGATGATCGAGGCGCCCTTTTGGCGTGGTCTTCCTGTGCAAAGGAAAGCCTTTGTACATAAAATATGTACCTACCAATTTCATGATGAATAATGATAATTGTTGCTATTTCATAC ATGGGTAGACAACCTTGTTGTGACAAACTAGGGGTGAAAAAAGGCCCGTGGACGGCCGAGGAAGATAAGAAGCTTATCAATTTTATTCTTACTAATGGTCAATGTTGTTGGAGGGCGGTTCCTAAACTCGCCGGACTTCGGCGATGTGGTAAGAGTTGCCGTCTCCGATGGACTAATTATCTCCGACCGGATTTGAAACGTGGCCTTCTTAGTGATGCCGAAGAACAATTGGTTATTGACCTTCATGCCCGATTGGGAAATAGGTGGTCCAAAATTGCTGCAAGATTGCCAGGAAGAACAGACAACGAGATCAAGAATCATTGGAACACCCACATCAAGAAAAAACTCATTAAGATGGGAATCGACCCGATTACCCATGAACCATTAAACAAATCGGATCAATCCCCAAATACTCAAATTATTACTCCAAACCAATCATCATCTTCCTCTAATAACAACAATAATTCGGATATTAGCACAGCTGAATCCTTAAACCAAACCCAATCATCATCGCCGGAAACCGCTAATAGTTTTCCGGCAATGTCGTCGGAAAACGTTACCAATAATAGTCCTCCTCCTCCGACGACGGAGAATAGCTCGAGTGTTAATGATAATCAATCTAATGACCCGAGTTTAATTGAAGGTATTAACATCGATAATGCGTTAATGAGTTACTTATGGGATGATACTGATGTTACACCATTGGAGTTGCCCTACACGTATAATTGTGACCAACCTTGTTTATCAAGCAATAACGTTGCTAATACGTGGGAAGATAATTATTCGTGGTTATTCGATTGTGAAGATTTTGGTATACAAGATTTTGGGCTTGATTGCTTCAATGACATTGAAATTATGAACACATTGGATGTGTTAGAAATGGGCAACAAGGAATGA MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSDAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKSDQSPNTQIITPNQSSSSSNNNNNSDISTAESLNQTQSSSPETANSFPAMSSENVTNNSPPPPTTENSSSVNDNQSNDPSLIEGINIDNALMSYLWDDTDVTPLELPYTYNCDQPCLSSNNVANTWEDNYSWLFDCEDFGIQDFGLDCFNDIEIMNTLDVLEMGNKE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11401.1 vs. NCBI nr
Match: gi|902207478|gb|KNA15716.1| (hypothetical protein SOVF_095660 [Spinacia oleracea]) HSP 1 Score: 605.5 bits (1560), Expect = 4.900e-170 Identity = 297/298 (99.66%), Postives = 297/298 (99.66%), Query Frame = 1
BLAST of Spo11401.1 vs. NCBI nr
Match: gi|731330579|ref|XP_010676207.1| (PREDICTED: protein ODORANT1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 477.6 bits (1228), Expect = 1.600e-131 Identity = 252/304 (82.89%), Postives = 268/304 (88.16%), Query Frame = 1
BLAST of Spo11401.1 vs. NCBI nr
Match: gi|657956068|ref|XP_008369511.1| (PREDICTED: protein ODORANT1 [Malus domestica]) HSP 1 Score: 339.0 bits (868), Expect = 8.600e-90 Identity = 177/301 (58.80%), Postives = 223/301 (74.09%), Query Frame = 1
BLAST of Spo11401.1 vs. NCBI nr
Match: gi|703088904|ref|XP_010093656.1| (Protein ODORANT1 [Morus notabilis]) HSP 1 Score: 339.0 bits (868), Expect = 8.600e-90 Identity = 194/323 (60.06%), Postives = 228/323 (70.59%), Query Frame = 1
BLAST of Spo11401.1 vs. NCBI nr
Match: gi|645266492|ref|XP_008238636.1| (PREDICTED: protein ODORANT1 [Prunus mume]) HSP 1 Score: 336.7 bits (862), Expect = 4.300e-89 Identity = 190/307 (61.89%), Postives = 222/307 (72.31%), Query Frame = 1
BLAST of Spo11401.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8A1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_095660 PE=4 SV=1) HSP 1 Score: 605.5 bits (1560), Expect = 3.400e-170 Identity = 297/298 (99.66%), Postives = 297/298 (99.66%), Query Frame = 1
BLAST of Spo11401.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKL4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098220 PE=4 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 1.100e-131 Identity = 252/304 (82.89%), Postives = 268/304 (88.16%), Query Frame = 1
BLAST of Spo11401.1 vs. UniProtKB/TrEMBL
Match: W9QU23_9ROSA (Protein ODORANT1 OS=Morus notabilis GN=L484_018994 PE=4 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 6.000e-90 Identity = 194/323 (60.06%), Postives = 228/323 (70.59%), Query Frame = 1
BLAST of Spo11401.1 vs. UniProtKB/TrEMBL
Match: M5WYP6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021568mg PE=4 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 8.700e-89 Identity = 189/307 (61.56%), Postives = 221/307 (71.99%), Query Frame = 1
BLAST of Spo11401.1 vs. UniProtKB/TrEMBL
Match: V4TPP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021695mg PE=4 SV=1) HSP 1 Score: 334.7 bits (857), Expect = 1.100e-88 Identity = 182/302 (60.26%), Postives = 218/302 (72.19%), Query Frame = 1
BLAST of Spo11401.1 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 5.100e-82 Identity = 174/304 (57.24%), Postives = 210/304 (69.08%), Query Frame = 1
BLAST of Spo11401.1 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 3.100e-55 Identity = 105/174 (60.34%), Postives = 136/174 (78.16%), Query Frame = 1
BLAST of Spo11401.1 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.800e-50 Identity = 86/138 (62.32%), Postives = 110/138 (79.71%), Query Frame = 1
BLAST of Spo11401.1 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 3.900e-50 Identity = 85/138 (61.59%), Postives = 112/138 (81.16%), Query Frame = 1
BLAST of Spo11401.1 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.500e-49 Identity = 86/140 (61.43%), Postives = 104/140 (74.29%), Query Frame = 1
BLAST of Spo11401.1 vs. TAIR (Arabidopsis)
Match: AT4G22680.1 (myb domain protein 85) HSP 1 Score: 276.2 bits (705), Expect = 2.400e-74 Identity = 161/290 (55.52%), Postives = 190/290 (65.52%), Query Frame = 1
BLAST of Spo11401.1 vs. TAIR (Arabidopsis)
Match: AT4G12350.1 (myb domain protein 42) HSP 1 Score: 271.6 bits (693), Expect = 6.000e-73 Identity = 157/302 (51.99%), Postives = 190/302 (62.91%), Query Frame = 1
BLAST of Spo11401.1 vs. TAIR (Arabidopsis)
Match: AT1G66230.1 (myb domain protein 20) HSP 1 Score: 250.0 bits (637), Expect = 1.900e-66 Identity = 151/292 (51.71%), Postives = 186/292 (63.70%), Query Frame = 1
BLAST of Spo11401.1 vs. TAIR (Arabidopsis)
Match: AT5G16600.1 (myb domain protein 43) HSP 1 Score: 235.3 bits (599), Expect = 4.700e-62 Identity = 129/225 (57.33%), Postives = 157/225 (69.78%), Query Frame = 1
BLAST of Spo11401.1 vs. TAIR (Arabidopsis)
Match: AT5G14340.1 (myb domain protein 40) HSP 1 Score: 212.6 bits (540), Expect = 3.300e-55 Identity = 99/158 (62.66%), Postives = 121/158 (76.58%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11401.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11401.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11401.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo11401.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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