Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTTTTTCCAAATACAAGGGAGAACAAATGGAAATGAAGGTGTACGTGGTGGCAGTGATAATATTGTTGTCTATACAATTCATGCCTTCATCAACACAAGAAGGTCCAACTCCAGCTCCTTCGCCAATAGGTATCTCTTTCTTTTCTGCTACAAGTTCAAGCTAGTTATATGAAGTACTTCGTATTAGGGAGAGCACAATAGAATACGTACCATGTTAAAATTTCAGGAATCTGAACCTGTTACAATAAGTTCCTGAAAATCAGAACAGAACCTGTTGTAACAAGTACCTAATTAAACAGTAAGCACCATCACTTGATGAGATTGGTTCGTAACCCAAGAACTCTGGGCTACAAACCTATAAAGTAAGAGTCGGTCGCGGACTCTTACCAAATGAGTTAAGCTTATCTTTGCTAATCAGTAACATAAAATATTCATTGGCAAACGTTAAAAGAAAAACGTTACAATTAAAAAACAGATGAACCATGTTTTGTATACTACATACGTATAAAGATGGTTGTAGGCCGGGCCAGCCCAAGGCCCAAACCGATACGAAAAAAGCCCGGCCCGATACGAACACGAAGCCATGCGTTGTTAGACGGGCATAAGCCGCTTTTTTTTGAAAACAAGCACGACTCGACCGGGCACGTCAAAGCACGCTTAATTTAGTAAAACTAGGCTTAGACACGACGGCCCGTGGATATGAGACTTGTTTTGAACTTTTCAGCCCGGCTGGCCCGTGAGCCCCATGCCCCGTGTGCTCGGCCCAAATTCCGACCCAACCATCTTTATGTACGTAGTATGCACATATACGCGCGTATACAACAATCGAGTCATGATTTATTGTTAACAATTGTACGTGTAACCTCACGGTTTTACGTACTTTTTTTGGTGTATAAACCATGATCAGGCGATCCAGATCTAGGACGGTGTTGGGATAACATCGGGAATTGCTTGAATGATAACATCAACAACAGTCGATCGATGCCACAGTTTGATCCATTAAGTGGGTCATTTAACGTGACAGAATTCTATTGTTGCTCTCTCATTCAAGAAATAGCAAGTACTGAAACACCGTGTTTTTGTAACATGAACACATATCTTCACCAATTTCCGACTATGGCAAACAGTGTTTTCCAGATTTTTACCACATGCGGCATCGTCACCTCACTTCCTGCTCTTGACAGATTTTGCCTTGGTAATAATACTACTGCATTTATTTATCTCTTTGTCCGACTTTAATTTACTTGACCATTATTAGTAAACAAATTCATTTTTATTTAATTTAATTTAATTTAATTTTTTTTTTTTTTTTGACAATAGCTAATTTTGTTGACATAGGTCTAATTTGCATACATGAAAAACGTTACCAAATACTCCGTACAAACTAAACAACTAATTAAGGTCTTTAAAGACCATTACACTTGCAAAACAACTAAAAAACAAATTAAGTAATAAAATTTGTTGGTAACTCACAAATAATTAAATTACACCATCACAAATTCATGTACAAGATTGACATTTGATTTTCAATGATTTTGAAATAACTAACCACCTAAATTAAACTTGTATTTGGAATACTATTGTCTATTTTAAAAAGCAACGATATATACAACCCTTAAGCTTGTAAACAAGCATTCAATAAATTTCCTAAATTCAAATTAATTATGAATTAATATAAAAAACACCGGTGTAATTTGTGTTCATTGAATTAAACATTTAAACATTTCCATTTTGAGCTCCTTAGGCTCCGTTCTATAGGATTTATTTTGACTGAACTCATATTATCTGAACTTAAATGAACTTATCTGAACTTATTTTATTTGAAAAAAAGCTTATTTTGTCTGAAATATTGTGTGTGAAAGTGTCTGAAAAATACTTATTTTTGTTGAACTTATATTATTTGAACTTATCTGACCTTAACTGAATTTTTCTGAACTTATCTGAACTTATTTTGTCTGAAATAAGGTCAAAATAAGTCCAACAGAACAGGGCTTTAGTTGCGGCTCTAAGGGCTTTATATTTATATGGACTACGGAGTATTGTTTTCCTGAATAAAAATGTATGCATAAAACTAACTTTTTGACTTATAAAATGGGAAGGGTTATATAATAAATTATTATTAGGGAAACAAACATTTGAATTATATTACGGAGTACTACGTATTATGTTTCACTTTATGTTTTTGACAATATTTTCTCTTTCACATTAAAATTGAAGGTGAAGCGCCAAGCCCTGCCCCAACTCCAATGATGTCATTATCTCCTGGTAATTCGTTTCCTTCAATTCTTCGCATATTGATTTCAAATGTAGATGATTCTCTGTGCGTAGAGTACTAGATTTGTCTTAACTTACTCGTAAATTGTCTTACATTGAAAAATAAAAGAAAATGTCATTTTATAAGCTTGAGAGCACCAACATTCCTATTTCCCACTACTAGATTATATCCCGTGCAAGCACGGATTTTAATATTTTTTTTCACTAAATATTTAACTGAATATCTCCCAAACTACTGCATAGTTATAACATTTTTAACATACTCGTTTAAATTTATTCATCTAATATGCATATTTAAAATGCAGCTATAATAATTTGACCAAAATATTAAGTAATATATTTTCTCATTATTAACATAGCGATTTGACTAAAATATTACAAATTCAGAATAATTATTATTACGTCGTATCTATTATTTCCATAATTTATAAACTAAAATTTGTTTCCATACATAAATAGTTATATAAAAAAAGGTGGAGAATAAAAATAAAATAAAACAGATACTCATTTTTGGAAAAGTGTTTTTTGGCGGGAAAAAATCGCACCAGGAATTGACACGTGTCATTCCTGGTGTCTCTTTTAGTATATAGTAATAGATAGATTATCAATCAGTTTTAATTAGTAATGAACATATGTGGACGTGTAGCCCGGCCCAAAAAATGCATGGTTACTCTAGGCCCGATATGGCCCAATATTTTGAAAAACCATTATGTTGTCCTGCCCGGAAAGAAGCCCAAAATAGCAAGTCTTTGACACAAAATATTCGGCTCAAACACAAGCCCGGCCTGGCCCCATGATCATAAGATTACAAAACGGAACCAAACGTAACCACAAAAATTATGTTCACAAATGATTTTTGTTTTTCGGTCAACCCAAAAACTTATCAAAATCTTTCGTGTACAAGAATATTTACTTGCTTTTTTTTTTTTGGTTCTACTACGAGGAGTTTCCACCGCCTTCGACGAGGTAATCTCTGGTGGGAGTTTGCATGGGTACCTCGATGGACAGCATCCTCCCAGTTGAGATTTTTTCCATTCCCAAGACTCGAACCCGAGAATTTGGTTAAGGAGCAAGAGACCCTTAACCACTCATGCCAACCTCAATTGGTATATTTACTTGCTAAATATACAAAGATTACATATATTAATGATTGCCTTTGATCGACTAGTTCATAGTCTGTCACAATTAGTATAACACTATGTATTGTGGTACCTTTTAAGTTTTTAACCATTAATTATTGGGGGTGATTTTAACTTGTTTTGATTATCTTCATACATTAGTTAAGAATAGATACTTAATGAGTAAATCTAATTGTTAATTTTTCCTGAAATTTAACAAGATTAAGTATACAATTGCAGGTAATTCTTAAGATAAAGCTGGCGGTTCTCCCAAGGACACGATGACAGGGTCACTTTAAGCTTCTCCATTTAATTTCCGTCTTGCATATATACTTCATTTTGTTTAGTTCTCTGGGCGGAGCTTGATTTCCATTATCATTTGTTAAGTGCACTATGTACAATTAAGGAACTGATTGAACTTTAACAATAAAGATACTACATATTTATGTTTGTGTTTGGTGATTTTTCATGTCAATTGTGATGATTTTGCAATTTAAATGAACGCAATAGAACTAATATTAGCAA ACTTTTTCCAAATACAAGGGAGAACAAATGGAAATGAAGGTGTACGTGGTGGCAGTGATAATATTGTTGTCTATACAATTCATGCCTTCATCAACACAAGAAGGTCCAACTCCAGCTCCTTCGCCAATAGGCGATCCAGATCTAGGACGGTGTTGGGATAACATCGGGAATTGCTTGAATGATAACATCAACAACAGTCGATCGATGCCACAGTTTGATCCATTAAGTGGGTCATTTAACGTGACAGAATTCTATTGTTGCTCTCTCATTCAAGAAATAGCAAGTACTGAAACACCGTGTTTTTGTAACATGAACACATATCTTCACCAATTTCCGACTATGGCAAACAGTGTTTTCCAGATTTTTACCACATGCGGCATCGTCACCTCACTTCCTGCTCTTGACAGATTTTGCCTTGGTGAAGCGCCAAGCCCTGCCCCAACTCCAATGATGTCATTATCTCCTGGTAATTCTTAAGATAAAGCTGGCGGTTCTCCCAAGGACACGATGACAGGGTCACTTTAAGCTTCTCCATTTAATTTCCGTCTTGCATATATACTTCATTTTGTTTAGTTCTCTGGGCGGAGCTTGATTTCCATTATCATTTGTTAAGTGCACTATGTACAATTAAGGAACTGATTGAACTTTAACAATAAAGATACTACATATTTATGTTTGTGTTTGGTGATTTTTCATGTCAATTGTGATGATTTTGCAATTTAAATGAACGCAATAGAACTAATATTAGCAA ATGGAAATGAAGGTGTACGTGGTGGCAGTGATAATATTGTTGTCTATACAATTCATGCCTTCATCAACACAAGAAGGTCCAACTCCAGCTCCTTCGCCAATAGGCGATCCAGATCTAGGACGGTGTTGGGATAACATCGGGAATTGCTTGAATGATAACATCAACAACAGTCGATCGATGCCACAGTTTGATCCATTAAGTGGGTCATTTAACGTGACAGAATTCTATTGTTGCTCTCTCATTCAAGAAATAGCAAGTACTGAAACACCGTGTTTTTGTAACATGAACACATATCTTCACCAATTTCCGACTATGGCAAACAGTGTTTTCCAGATTTTTACCACATGCGGCATCGTCACCTCACTTCCTGCTCTTGACAGATTTTGCCTTGGTGAAGCGCCAAGCCCTGCCCCAACTCCAATGATGTCATTATCTCCTGGTAATTCTTAA MEMKVYVVAVIILLSIQFMPSSTQEGPTPAPSPIGDPDLGRCWDNIGNCLNDNINNSRSMPQFDPLSGSFNVTEFYCCSLIQEIASTETPCFCNMNTYLHQFPTMANSVFQIFTTCGIVTSLPALDRFCLGEAPSPAPTPMMSLSPGNS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11414.1 vs. NCBI nr
Match: gi|902160133|gb|KNA06392.1| (hypothetical protein SOVF_181500 [Spinacia oleracea]) HSP 1 Score: 280.4 bits (716), Expect = 1.800e-72 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
BLAST of Spo11414.1 vs. NCBI nr
Match: gi|731330553|ref|XP_010676193.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 120.2 bits (300), Expect = 3.100e-24 Identity = 65/140 (46.43%), Postives = 83/140 (59.29%), Query Frame = 1
BLAST of Spo11414.1 vs. NCBI nr
Match: gi|731330557|ref|XP_010676195.1| (PREDICTED: putative uncharacterized protein DDB_G0290521 isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 120.2 bits (300), Expect = 3.100e-24 Identity = 65/140 (46.43%), Postives = 83/140 (59.29%), Query Frame = 1
BLAST of Spo11414.1 vs. NCBI nr
Match: gi|731330555|ref|XP_010676194.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 114.4 bits (285), Expect = 1.700e-22 Identity = 65/140 (46.43%), Postives = 81/140 (57.86%), Query Frame = 1
BLAST of Spo11414.1 vs. NCBI nr
Match: gi|731330559|ref|XP_010676196.1| (PREDICTED: uncharacterized protein LOC104892074 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 107.5 bits (267), Expect = 2.100e-20 Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1
BLAST of Spo11414.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGM7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181500 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 1.300e-72 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
BLAST of Spo11414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGA9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098120 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 2.200e-24 Identity = 65/140 (46.43%), Postives = 83/140 (59.29%), Query Frame = 1
BLAST of Spo11414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKK2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098130 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.500e-20 Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1
BLAST of Spo11414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKF8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098130 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.500e-20 Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1
BLAST of Spo11414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CFP0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098140 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 3.300e-20 Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11414.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11414.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11414.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo11414.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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