Spo11418 (gene)

Overview
NameSpo11418
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 45588129 .. 45591408 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACAAGTGAAGCTGGTTAGGCGGCGGCGGCGGCGGTAAAAGCGACCGCGTGTTCACCGGAAGGAGGTGGGTGCAATGTCCACATCGGACTGTCACCGTCTTATACAAGCTGCTTGACGGCACACTTACCTGTCCCCAAAGTTGAAATTTATGTTATCACAAACAAAACAAAACCCTAAAATAAAGGATATACTCCACTTCTATCAAATCATAAACATTAAATTTGAAAAATACACCATTAATAGTAATAACAAGATCAACAACAACAACAACAACAACAACAACAACCCAGTATTAATCCCGCGAACAGTAACAATATAGAAGAAACAAAGGAGGAAGGAATACCGCAAGAACAGTGTCGCAACGAGAGCATTGGAGATAGCAGAGTTGTTCAGAAGAAGGGAAGGGGTCCAATGACAAGTTAGTTGTTATTGTTGATGATGTAGAGCTTGACATTTCTGTTTCTTCTCTCTCTTTTATAATTGATGATTTGAAATTTGATCAATCCTTTGTTTTCTGATATTTGATTTGATTTGATTTGATATGATTTGATGGGTTTGACAGATGAAACCCCAACACCCTTGGATCCTTTTTTTTTGTTTAAATTTAATTTCCCCTTTTTGTTTTCAACTTAAATTTCAGCTTTGTGTATTGCTGCTCTGCTCAGAATGAAAGACAGGTGAGTGGGAAGAGAGAGATAGAGATAGAAAGAGAAAGAGATCCTAGAGATAGTGGGAGGTGGTGTTGTTGATCTAGTAGATAATAATAGGAGTACTCCGTATGAGAGAGTGGCTATGTCCTTACTTTGCTTCCTCCTTCATTTCTCATTATACTCAACTCTTCTTTGTGTTTCCTTTTATACCCCAATATAATGCCTCTACATGTATCTCATTTCTCATGTCATGTTAATGGATGTTATCTCTAATTCTTGTAACGTTATGTATGTGGTATACTTCATTCTGTCAACTACTATTATTGTTAAGATTTGACCCATGAAACAATACATGTGAGGGTCTCACGTTTTTAAAAGAGGAGAGAGTTAATCACTTAATAAGGTCAAGGGGCTACACCCCTTACATCCATATGGTTTTAAGGTGGCCGAACCTCCTTTGAACTCGTTAAGTGGACTCTCTGCGGCCCACGCCTGTATTTAACAATTATGTATGTCATGTTTATTCTGTTCAATACATTTTACGGTTTCTACCTAATCACGTTATGTTTGTGACATACTTCATTCTGTTGTCTAATAGTATACTTCATAGTTCATATGTACGGTTCAATTCAATTTATTCTACGGTTCTGTCTAATAACGTTATGTATGTGACATACTTCATTCTATACCATTGTGATGGTAGTTTTCTTTTATATTTTGGATTGTCTTGAATTTAATGCTATGTAAGTTGTGACACTTGCTTAAGCTGTAGCTTTTGCTCATTTATATTTGTGTTAGAGACAAGACTAACAATTGTGCTAGTTGTGGATAGTCAAAAATCGAGGTCACTTGTATTATGGACCGGAGATTGGCGACTAGCTAGTAATGAAACTAATGATCAACGATCTTATACTTCATTCTGTAGGCCAAGTTTTGTAGTGAAGTCTTGCCACTATATACATTGTTCATACTTCATCCTGAATCAATAATCCGAAGATTTAACATGATCATATTTAATTTCTACTTAGTACGTGTTATCTCAAATCCAATCATAATTGTGTATACGGGTATCAGCTTATGAGATACTACGTACACCCTAACATACATGTAACTAACGTATACACTATTACACTAACAATGGTGCCTTGATCAGTGCCCACACTCACAATCCGGGCATCACACAGGCTTTCAAGGCAGAAACTTGTGCTCTTCACATAGGACGGCCTTCAAGAAGCAAGACAACGCCTCCACATCAACATACTAGCATTGAGAGAGACAATTTGATGGTCATTAACGCAGTAAACGAAACTTGAAAAATCTCGTGGATGCTTCACTTCATTATTCAAGGTATCAAGAATATTCTTACTTTCTTCGACAATTGGGATATTAAGCACGTTCACCGAGAAGATAACTAAGCAACAAATTAATTAACAATACCATGAATATTGATTCTTGAAATAGTCCTCAACTCCTCGTTTACTTTCCATTTTAGACAATGACCACTTAGGAGTAACCCTCGTGCGGATTGGCTACTAATGTACCATTCTTCTTACCTTATTAAAAAAAAAATATAAGTAACGTATGTGAAGTACGGAATACATACTTGTTTAGATACGGAGGGAGTACCATTACAATTTACAAGTCGAGAAAAGTGAAACTTATAATGAGACTAGATGGGATTCATACATAGACGATCGACATGTTGAATGGAAATGGAGAGCATAGGGATTGTAGTCCGGCCGTAAGGATTGATAATCCGATGATCGACTCCGATCCATAGGCATACACGAAGCAGAAGCGGCAGATATGGGAGAGGAGTTAGAAAGGGACATTTGCATATTGTTTTGATCATTCACTTGTTGCTGTCATACTTAATACACCTTGTCATCTTCTTGTGCTTCTTTTTCCCCCCTCTCTTTTTTTTTTTGTTTTTTTGCTAGCTTTTCATTCTTGTTATTTTTTTTACATATATTTTTAATTCTAGAATTATATAGGGGGTGAAAAACTATGGGTTTGGTAAGGTCAACCCACTTTAAGGGCTAAATATAAAAACTCAACATAAGTACAACAAAATTTTGATATGTTAATCTTATTTTCACTCATTTAAGGAAAAATAAGTTAGATTAGTTCAACAAATACTGGTGGGTTGGAAAAATATAATAGCTAAAATATGTTTTAATAAGTTCAATTTAAGTTCAGATAAGATAAATTCAGAAAAAATAAGTGAAAATCAGATCAATAAAACGCACCTTGAGCTAGTAATTAAGTACTACGTAGTTCTCCTTTTTTGATAGGAGGGAAATGTTCCTCCTCCCCTTCCTTGCCTCTACTAGCTTGTTATCCAATTAAAGCATAAATGCTTGCATCGATCACACTCTATGACAATCCCTGATGATATCTAAAATCATGGTCTAATAATTGCAATTTGCGAGGGCGTAGAACTGTCAACTGTATAGATAAATTCAGATGCATCAAACTGCACACATAGCAACCAAAGGTAGCAGACATGAGCTAACAAATGCAGAACCCTATTCATATTATTGAACTAAACTCGTTGACTTGCTATTGGTTACATTGAGTTTTGATTAGTGTAGTTTGTTTTTCAGATCATCAACTAACTTATGA

mRNA sequence

ATGAGACAAGTGAAGCTGGCGGCGGCGGCGGCGGTAAAAGCGACCGCGTGTTCACCGGAAGGAGATCAACAACAACAACAACAACAACAACAACAACCCAGTATTAATCCCGCGAACAGTAACAATATAGAAGAAACAAAGGAGGAAGGAATACCGCAAGAACAGTGTCGCAACGAGAGCATTGGAGATAGCAGAGTTGTTCAGAAGAAGGGAAGGGGTCCAATGACAACTTTGTGTATTGCTGCTCTGCTCAGAATGAAAGACAGATCATCAACTAACTTATGA

Coding sequence (CDS)

ATGAGACAAGTGAAGCTGGCGGCGGCGGCGGCGGTAAAAGCGACCGCGTGTTCACCGGAAGGAGATCAACAACAACAACAACAACAACAACAACAACCCAGTATTAATCCCGCGAACAGTAACAATATAGAAGAAACAAAGGAGGAAGGAATACCGCAAGAACAGTGTCGCAACGAGAGCATTGGAGATAGCAGAGTTGTTCAGAAGAAGGGAAGGGGTCCAATGACAACTTTGTGTATTGCTGCTCTGCTCAGAATGAAAGACAGATCATCAACTAACTTATGA

Protein sequence

MRQVKLAAAAAVKATACSPEGDQQQQQQQQQQPSINPANSNNIEETKEEGIPQEQCRNESIGDSRVVQKKGRGPMTTLCIAALLRMKDRSSTNL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11418.1Spo11418.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo11418.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11418.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11418.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11418.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0008219 cell death
biological_process GO:0006952 defense response
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0010150 leaf senescence
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression