Spo11424 (gene) | SpinachBase

Overview


Name	Spo11424
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Seed dormancy control protein
Location	chr6 : 45662819 .. 45663562 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGCTCTAATCAACCGTTTCAAGAGTTCTCGCCCTTTCAAAGAATTCCACACAGATTGGATTAACACCCTAAAATCCAGCATCCTCCCTCTTCTCTCTCGTTCCCTCTCCTCCCCATCTCCAGACCATCATCTCCTTGCTACCCAAGTCGAACTCCTTCACACCCACTTCAATTCCTACTTCTCCGCCCTTGATCTTGCCTCTAACGACGACGTTTCACAGCTCCTCTTCCCTGACTGGCGAAATCCCCTCGAAAAGCCCTTTCTTTGGTTCGGCGATTTCCACCCTTATTCCTTCACTAATCTCCTCCGTTCTTTCCTCGAAGACGATGACGATGATAGTGACAATGATGCTAATTACGATTTTCTGGGTAATGTCTGGAAAAGTCGAGATGTTTCTGTGGGGCATATCGTCGAACAGGTGGAGTGCGGTTTGAGATTGATGGTTCCTTCAATTGTGGCGCGTTCTAGGGATGCTCAGGCTGCTTTGGTTGAAAAATTATCTGCTGGATGGAGACAAAATGGTGAGAATTTTGAGGTTGACGAGGTGGTCGGAGAATTGGTTGACAAGATGACTTGTGTTTTCTTGGATGCTAATAGGTTAAGAAGAAGTGTTCTTGCTGATATAATGGAGGCTTTGAATGTTTACCAAGCTGCGTTTTTTCTTCAAGGCCTTGCAAAATTCTATGTTGGGTTTTCGGATCCTAACTTGCTTGATCAGTTTAGCAACTCTACATAG

mRNA sequence

ATGATGAAAGCTCTAATCAACCGTTTCAAGAGTTCTCGCCCTTTCAAAGAATTCCACACAGATTGGATTAACACCCTAAAATCCAGCATCCTCCCTCTTCTCTCTCGTTCCCTCTCCTCCCCATCTCCAGACCATCATCTCCTTGCTACCCAAGTCGAACTCCTTCACACCCACTTCAATTCCTACTTCTCCGCCCTTGATCTTGCCTCTAACGACGACGTTTCACAGCTCCTCTTCCCTGACTGGCGAAATCCCCTCGAAAAGCCCTTTCTTTGGTTCGGCGATTTCCACCCTTATTCCTTCACTAATCTCCTCCGTTCTTTCCTCGAAGACGATGACGATGATAGTGACAATGATGCTAATTACGATTTTCTGGGTAATGTCTGGAAAAGTCGAGATGTTTCTGTGGGGCATATCGTCGAACAGGTGGAGTGCGGTTTGAGATTGATGGTTCCTTCAATTGTGGCGCGTTCTAGGGATGCTCAGGCTGCTTTGGTTGAAAAATTATCTGCTGGATGGAGACAAAATGGTGAGAATTTTGAGGTTGACGAGGTGGTCGGAGAATTGGTTGACAAGATGACTTGTGTTTTCTTGGATGCTAATAGGTTAAGAAGAAGTGTTCTTGCTGATATAATGGAGGCTTTGAATGTTTACCAAGCTGCGTTTTTTCTTCAAGGCCTTGCAAAATTCTATGTTGGGTTTTCGGATCCTAACTTGCTTGATCAGTTTAGCAACTCTACATAG

Coding sequence (CDS)

ATGATGAAAGCTCTAATCAACCGTTTCAAGAGTTCTCGCCCTTTCAAAGAATTCCACACAGATTGGATTAACACCCTAAAATCCAGCATCCTCCCTCTTCTCTCTCGTTCCCTCTCCTCCCCATCTCCAGACCATCATCTCCTTGCTACCCAAGTCGAACTCCTTCACACCCACTTCAATTCCTACTTCTCCGCCCTTGATCTTGCCTCTAACGACGACGTTTCACAGCTCCTCTTCCCTGACTGGCGAAATCCCCTCGAAAAGCCCTTTCTTTGGTTCGGCGATTTCCACCCTTATTCCTTCACTAATCTCCTCCGTTCTTTCCTCGAAGACGATGACGATGATAGTGACAATGATGCTAATTACGATTTTCTGGGTAATGTCTGGAAAAGTCGAGATGTTTCTGTGGGGCATATCGTCGAACAGGTGGAGTGCGGTTTGAGATTGATGGTTCCTTCAATTGTGGCGCGTTCTAGGGATGCTCAGGCTGCTTTGGTTGAAAAATTATCTGCTGGATGGAGACAAAATGGTGAGAATTTTGAGGTTGACGAGGTGGTCGGAGAATTGGTTGACAAGATGACTTGTGTTTTCTTGGATGCTAATAGGTTAAGAAGAAGTGTTCTTGCTGATATAATGGAGGCTTTGAATGTTTACCAAGCTGCGTTTTTTCTTCAAGGCCTTGCAAAATTCTATGTTGGGTTTTCGGATCCTAACTTGCTTGATCAGTTTAGCAACTCTACATAG

Protein sequence

MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDANYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLLDQFSNST

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11424.1	Spo11424.1	mRNA

Homology

[Close]

BLAST of Spo11424.1 vs. NCBI nr
Match: gi|902211254|gb|KNA16667.1| (hypothetical protein SOVF_087050 [Spinacia oleracea])

HSP 1 Score: 500.7 bits (1288), Expect = 1.400e-138
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1

		  
Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN
Sbjct: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120
           SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120

Query: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180
           NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF
Sbjct: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180

Query: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240
           EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL
Sbjct: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240

Query: 241 DQFSNST 248
           DQFSNST
Sbjct: 241 DQFSNST 247

[Close]

BLAST of Spo11424.1 vs. NCBI nr
Match: gi|870861247|gb|KMT12542.1| (hypothetical protein BVRB_5g097900 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 375.6 bits (963), Expect = 6.900e-101
Identity = 188/255 (73.73%), Postives = 211/255 (82.75%), Query Frame = 1

		  
Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMK+L+NRFK+S  FK+F+TDWI TLKS++LPLL+ SLSS SPD  LL+TQ++LLH HFN
Sbjct: 1   MMKSLLNRFKNSHSFKDFYTDWIKTLKSTLLPLLTNSLSSSSPDPLLLSTQLDLLHKHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDS---- 120
           SYFSALDLASNDDVSQLLFPDWRNP+EKPFLW GDFHPY FTNLLRSF +DDDDD     
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPIEKPFLWLGDFHPYIFTNLLRSFFDDDDDDDVDSD 120

Query: 121 --DNDANYDFLG---NVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 180
             D+   +  +G   NVWK  DVS+GHIVEQ+ECGLRLMVPSI ARSRDAQAALVEKL  
Sbjct: 121 ECDDGKRFHSMGKAWNVWKCPDVSLGHIVEQMECGLRLMVPSIAARSRDAQAALVEKLGV 180

Query: 181 GWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFY 240
           GWR+ GENFEV EV+ ELVD MTCVF+DANRLRRSVLADIM ALNVYQAA F   LA+FY
Sbjct: 181 GWREKGENFEVGEVIHELVDDMTCVFMDANRLRRSVLADIMGALNVYQAAIFFHSLAQFY 240

Query: 241 VGFSDPNLLDQFSNS 247
           VGF D  LL QF+NS
Sbjct: 241 VGFWDNKLLTQFNNS 255

[Close]

BLAST of Spo11424.1 vs. NCBI nr
Match: gi|731330513|ref|XP_010676171.1| (PREDICTED: uncharacterized protein LOC104892053 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 275.0 bits (702), Expect = 1.300e-70
Identity = 135/186 (72.58%), Postives = 154/186 (82.80%), Query Frame = 1

		  
Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMK+L+NRFK+S  FK+F+TDWI TLKS++LPLL+ SLSS SPD  LL+TQ++LLH HFN
Sbjct: 1   MMKSLLNRFKNSHSFKDFYTDWIKTLKSTLLPLLTNSLSSSSPDPLLLSTQLDLLHKHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDS---- 120
           SYFSALDLASNDDVSQLLFPDWRNP+EKPFLW GDFHPY FTNLLRSF +DDDDD     
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPIEKPFLWLGDFHPYIFTNLLRSFFDDDDDDDVDSD 120

Query: 121 --DNDANYDFLG---NVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 178
             D+   +  +G   NVWK  DVS+GHIVEQ+ECGLRLMVPSI ARSRDAQAALVEKL  
Sbjct: 121 ECDDGKRFHSMGKAWNVWKCPDVSLGHIVEQMECGLRLMVPSIAARSRDAQAALVEKLGV 180

[Close]

BLAST of Spo11424.1 vs. NCBI nr
Match: gi|1009157163|ref|XP_015896624.1| (PREDICTED: uncharacterized protein LOC107430301 [Ziziphus jujuba])

HSP 1 Score: 258.8 bits (660), Expect = 9.400e-66
Identity = 137/269 (50.93%), Postives = 183/269 (68.03%), Query Frame = 1

		  
Query: 1   MMKA--LINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTH 60
           M+KA  L  R K++RPFK+++TDW NTL +S+LPLL  S+         L+  VE++H+H
Sbjct: 1   MLKAVGLFGRKKTTRPFKDYYTDWFNTLNNSLLPLLRSSMDDAFLPQ--LSIHVEMIHSH 60

Query: 61  FNSYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN 120
           F SY+ ALDLA++DDV+QLL+PDWRN LEKPFLW GDFHPY FTNLLRSFL+D D++ D+
Sbjct: 61  FQSYYEALDLAASDDVTQLLYPDWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDENEDD 120

Query: 121 DANYDFLGN------------------VWKSRDVSVGHIVEQVECGLRLMVPSIVARSRD 180
           D  +  LGN                   WK+    + + VEQ+ECGLRLMVP++VAR+RD
Sbjct: 121 DDGFGDLGNGECSESYELFDRPWHLVMAWKNPSKILMNRVEQIECGLRLMVPALVARARD 180

Query: 181 AQAALVEKLSAGWRQ-NGENFE-----VDEVVGELVDKMTCVFLDANRLRRSVLADIMEA 240
           AQ   +E L+  W + +G N E     V E +   +D++  VFLDANRLRRSV+++I+ A
Sbjct: 181 AQMVFIESLAKNWVECDGGNKEAAKAVVAEPMEAQMDEVVSVFLDANRLRRSVISEIIGA 240

Query: 241 LNVYQAAFFLQGLAKFYVGFSDPNLLDQF 244
            NVYQAA FL+GL++F VGF D  LL +F
Sbjct: 241 ANVYQAALFLEGLSQFLVGFKDSELLGEF 267

[Close]

BLAST of Spo11424.1 vs. NCBI nr
Match: gi|731438343|ref|XP_010646544.1| (PREDICTED: uncharacterized protein LOC100250621 [Vitis vinifera])

HSP 1 Score: 250.0 bits (637), Expect = 4.400e-63
Identity = 128/261 (49.04%), Postives = 179/261 (68.58%), Query Frame = 1

		  
Query: 4   ALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYF 63
           AL +R K+ RPFK+++  WI+ L +++LPLL R++ S SP +  L+T VE++H HF +Y+
Sbjct: 6   ALFSRKKACRPFKDYYAQWIHALNNTLLPLLRRAMLSSSPSN--LSTHVEMVHHHFQAYY 65

Query: 64  SALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN----- 123
            ALDLA+++DV+QLL+P+WRN LEKPFLW GDFHPY FTNLLRSFL+D DDD D+     
Sbjct: 66  EALDLAASNDVAQLLYPEWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDDDDDDGDHEV 125

Query: 124 -------DANYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 183
                  D  +  L   WK+   ++   +EQ+EC LRLMVP++VAR R+AQ  L ++++ 
Sbjct: 126 GETCSFCDTPWQIL-MAWKNPSETLMARIEQIECALRLMVPALVARVRNAQLGLFDRVAT 185

Query: 184 GW-----RQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQG 243
            W     ++ G    + + V   +D+M  VFLDANRLR+SVLA+I+   NVYQAA FL+G
Sbjct: 186 DWGLFQGKREGAKAVIGKAVMGQMDEMLGVFLDANRLRKSVLAEIIGETNVYQAALFLEG 245

Query: 244 LAKFYVGFSDPNLLDQFSNST 248
           LA+F+VGF D  LL +F   T
Sbjct: 246 LAQFFVGFRDHELLSEFERCT 263

[Close]

BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCY4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_087050 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 9.900e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1

		  
Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN
Sbjct: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120
           SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120

Query: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180
           NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF
Sbjct: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180

Query: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240
           EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL
Sbjct: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240

Query: 241 DQFSNST 248
           DQFSNST
Sbjct: 241 DQFSNST 247

[Close]

BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CG88_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g097900 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 4.800e-101
Identity = 188/255 (73.73%), Postives = 211/255 (82.75%), Query Frame = 1

		  
Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMK+L+NRFK+S  FK+F+TDWI TLKS++LPLL+ SLSS SPD  LL+TQ++LLH HFN
Sbjct: 1   MMKSLLNRFKNSHSFKDFYTDWIKTLKSTLLPLLTNSLSSSSPDPLLLSTQLDLLHKHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDS---- 120
           SYFSALDLASNDDVSQLLFPDWRNP+EKPFLW GDFHPY FTNLLRSF +DDDDD     
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPIEKPFLWLGDFHPYIFTNLLRSFFDDDDDDDVDSD 120

Query: 121 --DNDANYDFLG---NVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 180
             D+   +  +G   NVWK  DVS+GHIVEQ+ECGLRLMVPSI ARSRDAQAALVEKL  
Sbjct: 121 ECDDGKRFHSMGKAWNVWKCPDVSLGHIVEQMECGLRLMVPSIAARSRDAQAALVEKLGV 180

Query: 181 GWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFY 240
           GWR+ GENFEV EV+ ELVD MTCVF+DANRLRRSVLADIM ALNVYQAA F   LA+FY
Sbjct: 181 GWREKGENFEVGEVIHELVDDMTCVFMDANRLRRSVLADIMGALNVYQAAIFFHSLAQFY 240

Query: 241 VGFSDPNLLDQFSNS 247
           VGF D  LL QF+NS
Sbjct: 241 VGFWDNKLLTQFNNS 255

[Close]

BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: A5AYG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000736 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.200e-62
Identity = 127/260 (48.85%), Postives = 178/260 (68.46%), Query Frame = 1

		  
Query: 5   LINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYFS 64
           L +R K+ RPFK+++  WI+ L +++LPLL R++ S SP +  L+T VE++H HF +Y+ 
Sbjct: 78  LFSRKKACRPFKDYYAQWIHALNNTLLPLLRRAMLSSSPSN--LSTHVEMVHHHFQAYYE 137

Query: 65  ALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN------ 124
           ALDLA+++DV+QLL+P+WRN LEKPFLW GDFHPY FTNLLRSFL+D DDD D+      
Sbjct: 138 ALDLAASNDVAQLLYPEWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDDDDDDGDHEVG 197

Query: 125 ------DANYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAG 184
                 D  +  L   WK+   ++   +EQ+EC LRLMVP++VAR R+AQ  L ++++  
Sbjct: 198 ETCSFCDTPWQIL-MAWKNPSETLMARIEQIECALRLMVPALVARVRNAQLGLFDRVATD 257

Query: 185 W-----RQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGL 244
           W     ++ G    + + V   +D+M  VFLDANRLR+SVLA+I+   NVYQAA FL+GL
Sbjct: 258 WGLFQGKREGAKAVIGKAVMGQMDEMLGVFLDANRLRKSVLAEIIGETNVYQAALFLEGL 317

Query: 245 AKFYVGFSDPNLLDQFSNST 248
           A+F+VGF D  LL +F   T
Sbjct: 318 AQFFVGFRDHELLSEFERCT 334

[Close]

BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: M5WDC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014749mg PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.500e-62
Identity = 129/263 (49.05%), Postives = 171/263 (65.02%), Query Frame = 1

		  
Query: 1   MMKA--LINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTH 60
           M+KA  L  R K++R FK+F+ +W NTLK+++LP L  S+S        L+TQ+E LH H
Sbjct: 1   MLKAVGLFGRKKTTRQFKDFYAEWFNTLKNTLLPSLRSSMSESDSSLTRLSTQMEALHLH 60

Query: 61  FNSYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN 120
           F SY+ ALDLA+ +DV+QLL P WRNPLEKPFL+ GDFHPY FTNLLRSFL  +D DSDN
Sbjct: 61  FQSYYDALDLAAQNDVAQLLCPTWRNPLEKPFLFLGDFHPYLFTNLLRSFLTQNDTDSDN 120

Query: 121 DANYD------------------FLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRD 180
           + + D                   +   W+    ++   VEQVE GLRLMVP++ AR+RD
Sbjct: 121 ENDGDSMVVQCDRGDRDRFDRPWHIATAWRRPSYNLMERVEQVERGLRLMVPALAARARD 180

Query: 181 AQAALVEKLSAGWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQA 240
           AQ   +E+++  W        V+E + E  ++M  VF+DANRLR+SVL +IM A +V+Q 
Sbjct: 181 AQVGFLERVARNWAFGTHKAAVEEAMAEQNEEMVGVFVDANRLRKSVLVEIMGATSVFQG 240

Query: 241 AFFLQGLAKFYVGFSDPNLLDQF 244
           A FL+GLA+F VGF DP LL QF
Sbjct: 241 ALFLEGLAQFLVGFRDPELLAQF 263

[Close]

BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: K4CNR4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.500e-59
Identity = 126/245 (51.43%), Postives = 169/245 (68.98%), Query Frame = 1

		  
Query: 10  KSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHH-LLATQVELLHTHFNSYFSALDL 69
           KSS+PFK+++  W  TLK+ +LP L  ++SS +     LLA+ VE++H HF  Y+ ALDL
Sbjct: 12  KSSKPFKDYYDGWFKTLKNVLLPQLRHAMSSSATSGPILLASHVEVMHRHFLKYYEALDL 71

Query: 70  ASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDANYDFLGN- 129
           A+ +DVSQ+L+PDWRNP EKPFLW GD HPY FTNLLRSF+ D + + D+D  +D L N 
Sbjct: 72  AAANDVSQVLYPDWRNPFEKPFLWLGDLHPYLFTNLLRSFIGDSESEIDSDI-FDKLQNW 131

Query: 130 ----VWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGW-RQNGENFEV 189
                WKS    +   V+Q+ECGLRLMVP++ AR+RDAQA  VEK++  W +  G   E+
Sbjct: 132 HVVMAWKSPSRKLTTGVDQIECGLRLMVPALAARARDAQAKFVEKMAVEWGKCEGRKQEM 191

Query: 190 DEVVGEL----VDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPN 244
             VVGE     ++++  VF+DANRLRRSVL+DI+   +V QAA FL+ LA+F VGF +  
Sbjct: 192 KGVVGESSAAEMEELVGVFVDANRLRRSVLSDILNVTDVNQAAVFLEALAQFLVGFRNRE 251

[Close]

BLAST of Spo11424.1 vs. TAIR (Arabidopsis)
Match: AT4G22600.1 (unknown protein)

HSP 1 Score: 178.7 bits (452), Expect = 4.400e-45
Identity = 101/264 (38.26%), Postives = 150/264 (56.82%), Query Frame = 1

		  
Query: 4   ALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYF 63
           +  +R K SR F +F+ DW  TL  + LPLL +SLSS +    +L++ V+L+  H   Y+
Sbjct: 4   SFFSRKKPSRRFNDFYEDWSKTLTENCLPLLRQSLSSAA-SASVLSSNVDLVLRHLVLYY 63

Query: 64  SALDLASNDD-VSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLE---DDDDDSDND 123
             LDLA++ + +  LLFP WRN LE PFL+ GD HPY  TNLLRSF++    D DD D +
Sbjct: 64  ETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDSDDEDEE 123

Query: 124 ANYDFLGN------VWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGW 183
            + D +         WK     +   ++Q+EC +RLMVP ++ R R  Q + V ++S  W
Sbjct: 124 TSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVARVSESW 183

Query: 184 RQNGE--------------NFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQ 243
             + +              +  VDE     ++++  +F+DANRLR+SV+ DI+ A + +Q
Sbjct: 184 VSSYQVGKKKKLTATVATASTSVDEAAKIEMEELVSIFVDANRLRKSVIMDIVGATSEHQ 243

The following BLAST results are available for this feature:

BLAST of Spo11424.1 vs. NCBI nr
BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
BLAST of Spo11424.1 vs. ExPASy Swiss-Prot
BLAST of Spo11424.1 vs. TAIR (Arabidopsis)

BLAST of Spo11424.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902211254\|gb\|KNA16667.1\|	1.4e-138	100.	hypothetical protein SOVF_0870...	[more]
gi\|870861247\|gb\|KMT12542.1\|	6.9e-101	73.7	hypothetical protein BVRB_5g09...	[more]
gi\|731330513\|ref\|XP_010676171.1\|	1.3e-70	72.5	PREDICTED: uncharacterized pro...	[more]
gi\|1009157163\|ref\|XP_015896624.1\|	9.4e-66	50.9	PREDICTED: uncharacterized pro...	[more]
gi\|731438343\|ref\|XP_010646544.1\|	4.4e-63	49.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RCY4_SPIOL	9.9e-139	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CG88_BETVU	4.8e-101	73.7	Uncharacterized protein OS=Bet...	[more]
A5AYG1_VITVI	1.2e-62	48.8	Putative uncharacterized prote...	[more]
M5WDC1_PRUPE	7.5e-62	49.0	Uncharacterized protein OS=Pru...	[more]
K4CNR4_SOLLC	4.5e-59	51.4	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo11424.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

BLAST of Spo11424.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT4G22600.1	4.4e-45	38.2	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025422	Transcription factor TGA like domain	PFAM	PF14144	DOG1	coord: 32..107 score: 4.3
None	No IPR available	PANTHER	PTHR22952	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	coord: 37..147 score: 1.2E-49coord: 166..234 score: 1.2
None	No IPR available	PANTHER	PTHR22952:SF17	CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN B	coord: 37..147 score: 1.2E-49coord: 166..234 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0009409	response to cold
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0006396	RNA processing
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0040007	growth
biological_process	GO:0009451	RNA modification
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0010048	vernalization response
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0097034	obsolete mitochondrial respiratory chain complex IV biogenesis
biological_process	GO:0097031	obsolete mitochondrial respiratory chain complex I biogenesis
biological_process	GO:0009987	cellular process
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006397	mRNA processing
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0010319	stromule
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0015238	drug transmembrane transporter activity
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0005488	binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008266	poly(U) RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04377	0.77	Barchart \| Table
Spo13835	0.77	Barchart \| Table
Spo05733	0.76	Barchart \| Table
Spo19474	0.74	Barchart \| Table
Spo20952	0.73	Barchart \| Table
Spo23767	0.72	Barchart \| Table
Spo21501	0.72	Barchart \| Table
Spo05969	0.72	Barchart \| Table
Spo16806	0.71	Barchart \| Table
Spo07490	0.71	Barchart \| Table
Spo26857	0.71	Barchart \| Table
Spo00806	0.71	Barchart \| Table
Spo07928	0.71	Barchart \| Table
Spo02221	0.71	Barchart \| Table
Spo26727	0.70	Barchart \| Table
Spo05078	0.70	Barchart \| Table
Spo18296	0.70	Barchart \| Table
Spo21071	0.70	Barchart \| Table
Spo13566	0.69	Barchart \| Table
Spo27291	0.69	Barchart \| Table
Spo00400	0.69	Barchart \| Table
Spo14857	0.69	Barchart \| Table
Spo06061	0.68	Barchart \| Table
Spo02816	0.68	Barchart \| Table
Spo03027	0.68	Barchart \| Table
Spo13374	0.68	Barchart \| Table
Spo14747	0.68	Barchart \| Table
Spo26736	0.68	Barchart \| Table
Spo16106	0.67	Barchart \| Table
Spo16892	0.67	Barchart \| Table
Spo18150	0.67	Barchart \| Table
Spo08879	0.67	Barchart \| Table
Spo08599	0.67	Barchart \| Table
Spo22006	0.67	Barchart \| Table
Spo24533	0.67	Barchart \| Table
Spo24787	0.67	Barchart \| Table
Spo25451	0.67	Barchart \| Table
Spo25907	0.67	Barchart \| Table
Spo26235	0.67	Barchart \| Table
Spo01272	0.67	Barchart \| Table
Spo16568	0.67	Barchart \| Table
Spo24679	0.66	Barchart \| Table
Spo22715	0.66	Barchart \| Table
Spo05792	0.66	Barchart \| Table
Spo21531	0.66	Barchart \| Table
Spo03057	0.66	Barchart \| Table
Spo22182	0.66	Barchart \| Table
Spo16884	0.66	Barchart \| Table
Spo05680	0.66	Barchart \| Table
Spo22543	0.66	Barchart \| Table
Spo22666	0.66	Barchart \| Table
Spo18478	0.66	Barchart \| Table
Spo12377	0.66	Barchart \| Table
Spo19859	0.66	Barchart \| Table
Spo21939	0.65	Barchart \| Table
Spo23133	0.65	Barchart \| Table
Spo03505	0.65	Barchart \| Table
Spo14523	0.65	Barchart \| Table
Spo26195	0.65	Barchart \| Table