Spo11436 (gene) | SpinachBase

Overview


Name	Spo11436
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit)
Location	SpoScf_00676 : 258036 .. 262417 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCCCAATAAGTGGATGTGTTTATTACCCTATTGGATTGGAGCATAAGATCGTTATGATGGTAAGGAGACTAGTTGGAGAAAAGAATCTCAAAATTTCAGGTGAGATTGCGCAAGTTTGATGGAAAGCAGTATGATAAGCAGTTGAGAGATGGGGATCCTATTCCTGGGTACATCGTCATCCGATTCCGAGGTAGAGATGGAGGTTTAGGGTTCGTTGATCGCTACCCTGGTGAGTGGTGACGATTGGGATCACAAGTTGAACCAACGCTAGACAATATCTTATCCAAGAGCTCAACTGCACCTTTTATAGCTCTGTTTATGGATCCCAGCTTCTTATAACTCGTCTCCATCCGTCCCAGGATGCCCGTCTATTCATCAACCTCCTTCCGTCTTCTTCTTCTTCTTCTTCAACACGAGTACCACCTACCATCCTTTTCCAGGGTTTGCCTGATTGCTTTTTTCCCTCGCCAAAATTAGGGATCTTGATATGAAAAAATTCCATCCAATTTAAGAATTACAAGGAATNACCACCTACCATCCTTTTCCAGGGTTTGCCTGATTGCTTTTTTCCCTCGCCAAAATTAGGGATCTTGATATGAAAAAATTCCATCCAATTTAAGAATTACAAGGAATGTTACAAAGCATTGAAAAAATTGTCAAATCTGTAATGGAGGAATTAGGACCAGGTTACAACGAATCACCTAGCACTCGGCCTCTCAGTCTCAGGAACCGACTGTCAATGCTTAATAAGGAATTGAGCACTATGAAACTTGTACTGGAGGAATTTACCACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTGATAGAGATGAGGGTTCAAAGGCTCTGGAGATCCGAGTGGCAATGCTTGAAAACTACTTCGTATTAAAGATGCCATGGCGAGTACAGAAAAGAAAAAGAAAAAGAAACAGAAACAGAAAATAAAGGAATCTGCTCTTGGCTACAACAAATCACCTATGAGTCCGGCTCTCAAGCGTTGCAAACCCTTGACAAGGGATTCAACACTTGTAATGGAGGATTGTCCATTACTGATGACGCGTCGTTAGTCCGCCGTTAGTCCTCCTACCCCTATTTTAATACTTATTTCACCAAATACCCTTATTATGAAACATAATTCACCAAATATCCATAACTTAAAACTACCAATATTAATACTCAATGGCTAGGTTTTGTGTTTGAAAATTAGTCGTTACTTATTGTTTTCTTATAAATACTATTTTCTTTTCTGACTAGTAACATATAACAAGACAAGTGCTTAAAATTGTTATTTTCTTTTTTAACCCACCATGTTTCATTGGCTAGTCAAATCACCTTTCACAACCCAACAAAAATCAATTTACCCCCTCCGAAAATACAGCAGAAGAAGAAAAAAACAAACAACAATCGCAACTGAAAACTTCACTTCACTCCTCATCTTCTCTATCCGACTTGCGAGCCGAGCGATTAATGCATTCAAGGGTTTCACGACTAGCCGGCGCCGCGTATTTTCGGTGGTTGTCCACCGTTTCCACGGTGGCGCCGGCAGAAGCAGAGGAAATCTTCAGTGAAGCATGGAAGAAAGTGGTACCCCACGTAGACCCACCTAAAACTCCTCTCTCATTTATCCAACATCGACCTCCAATACCGACTTCAATACCTTCCAAACTCACCCTTAATTTCCATCTTCCCTACATTTCCCACCTTTCCAACAAAGAGGTACCATGAACTTTCTACTGTTAACTATTTTTGGGGTTTAACGTTAGTAAATGAATTGCTTGATTTTATTGGCCTGTTTTAATTGTGTTATGTGAATTTGTCAAAATGTTTGATTGTTTCTCTTGTTTTTCTTTGTTTGATGCTAGCAAATCAATTGTTTTAACGTATTGGCTTAATTTTTGGTTCATTTGTTTTCCGTTCCTTTTTAATTGTTGCTTTAACTAACTTTTTCCCTTCCATTTTAACGGTTGCTTTTGAATTATCGATATAACTTCCATCTTTAATAATTGTAGGTCAGTTATTATGAAATTGTGTCTAAATTATAAAAAATATGCATAAGAAAAGGTGAAATAAGAGTATTTCCAAGAGAAATTTATGAGAAATAATATTATCCAGGGAAAGCTTGATTGATGATTTCAGCTAAATATTGTGTTTGAGGCACTTCGTTTCTGTTTTTGATCATATTTTTTTTAAAAAAAANTTCAGCTAAATATTGTGTTTGAGGCACTTCGTTTCTGTTTTTGATCATATTTTTTTAAAAAAAAATGTGTGATGTGTTTGTTTCATCTTTGATCTTTGGACTTTGTAATTAGTCAGGGAAAATTAGGGCGATGTCTTGTTGATATCTTAGGACTTTGTAATTTGTACCTTCTCTTACAAAATTAGGACTTTGTAATTTGTACCTTCTCTTACAAAATGGAAACAAGAACGAGGTTATTTGCCTTAAGACTAGAGAACGAGGTTAATGGCCTTAAGACTAGACATTTTTGCTCTTTCAGACAAACTATAGCATATTGTTGTGTTAAGGACCTATTCCTATATGCCGACCTTTCTACTGGTTAGTGAAATACTCATCTATCAGCAGCAGAACAACTTATTGCAATTGATACAATTATTTTCCTTATAGTCTTACACTCTTAGGCTTTGTTTTGTTCACCTTATTTTCACTTACTTCAGGTGTAATAAGATAAAATAAGATTTAAAAAAAGGACAATAAACTCAAATAAGATAAGTTAACATAAGATAATATAAGATTAGTGACACACATTGATTCCAATACTGGATGTTGGTTTTCATTATCGATTCTGATGAAGAGATAGTGCCTTTTAGTTTCCCCAGCCATGGTACCTAAAAGCTGCTAAACATACTTGTGAACTTTATGCAAGTTACTCAGTCCAGAAAGGAAAACACTTTTTCAGTTCCGCAACTATGTATAAAATGAGAGAAGGAGAACGCTAGCTTTTGAGATGAGTGAAGACTGTTGATTGTTCAGAAATTCTTATTGAAATTTCACAGGATTTTCATCATTCCTAAGAAAATACTCAAATTAATTTTTTGTGGGATGCAATGGAATTATGTACCTTTGACTTTACTTGGTTTGTGTAGCATTTGAGTTTTGCTTCTGAATGGTGTGTTTGGCAATTGACATGCTACCGAGAAGTCAAGAACCTACTGTAATCACTGAACGGTGAAAGTTATCTGTTATGTAAAGAACTTGCATTAACAAAGGTCAAAACTTGAAATATGCAACTCTCTCTGAGATTAATTGGTAACCTGGCAGACTTTCTTATAATAAAGTCACAATTTTGTCTTTGCACTAACCTTATATTGATTCGATTGTATTTGATAGTTGCTTTTGCCTTGATTATGATTTGTAGAGTGAGCATGATTTTGAATAATTGTATGGGGAAAGCAACAAAAGACTCACCCTTGGCAGTTTGTACATATATGCAGGTTGATATGGTGATAGTGCCAGCAACAACTGGGCAGATGGGTGTTCTTCCGGGGCATACAGCAACCATGACAGAGTTGAAGCCGGGCATTCTCTCAATTCAGCAAGGCAACGAAACAACAAAGTATTTTGTCAGTGGTGGCTTTGCTTTCATCCATTCAAACTCTGTTGCAGACATAATCACAGTTGAGGCTGTTACTATTGATAAAATTGATCCAAACATGGTTAAAATAAAGCTTGCTGAATATTCACTGAAATTGAATACAGCCACAACAGATTATGAGAAAGCTGAAGCGCAAATTGGAGTAGATGTTCACAACGCCTTACAGTCTGCTCTCGCGGCCTAATATTTGCATTATCCTTTCCTGAAACATTTGACTGTCCAGTCTTCCTCAATGTACATGTGTCTAAGTGTATTGAAATTACAACTCTTTACCGATCTCTTTGGCCATAAGTTAGAACGAACATTGGTGCCAGTTTCTTGTGTTATTATCATGGCAAATGAATCTGTGAAAGAAAGTAGTTGGTAGTGTTTTTTTGGTGTGTACTTTCTCCTTGTTTCCTGCTACTATCAAATGCCTGTGGCTCGACAGCTCATCAACCACGGGCGTAGTTGGACCTAGCAGGTATTTTATGTTGAACAGCTTAAGCTTCCGTTAGACCGGTTTTAATCCGTAAACACATGATACTAACATTTTTACATGTCATGTGTCATCCTCTAGAGCATATTAGATGCACTCGGGTGTACCGTGTACCCTCTCACATTTTCTCTTTACATGTGAGGAAAAATGCGGCAGGGACTACCAATGGGTATAAAAATACCCTTGAGTACACAATATGACAATACACCCGGGTGCACCTAATAATTTTCAGTCATCTTCCCCCTCCTTGTTTCCTTTTTTTTTTAAAGCCACCACTCGATCTCAT

mRNA sequence

TAATCCCAATAAGTGGATGTGTTTATTACCCTATTGGATTGGAGCATAAGATCGTTATGATGGTAAGGAGACTAGTTGGAGAAAAGAATCTCAAAATTTCAGGTGAGATTGCGCAAGTTTGATGGAAAGCAGTATGATAAGCAGTTGAGAGATGGGGATCCTATTCCTGGGTACATCGTCATCCGATTCCGAGGTAGAGATGGAGGTTTAGGGTTCGTTGATCGCTACCCTGGTGAGTGGTGACGATTGGGATCACAAGTTGAACCAACGCTAGACAATATCTTATCCAAGAGCTCAACTGCACCTTTTATAGCTCTGTTTATGGATCCCAGCTTCTTATAACTCGTCTCCATCCGTCCCAGGATGCCCGTCTATTCATCAACCTCCTTCCGTCTTCTTCTTCTTCTTCTTCAACACGAGTACCACCTACCATCCTTTTCCAGGGTTTGCCTGATTGCTTTTTTCCCTCGCCAAAATTAGGGATCTTGATATGAAAAAATTCCATCCAATTTAAGAATTACAAGGAATNACCACCTACCATCCTTTTCCAGGGTTTGCCTGATTGCTTTTTTCCCTCGCCAAAATTAGGGATCTTGATATGAAAAAATTCCATCCAATTTAAGAATTACAAGGAATGTTACAAAGCATTGAAAAAATTGTCAAATCTGTAATGGAGGAATTAGGACCAGGTTACAACGAATCACCTAGCACTCGGCCTCTCAGTCTCAGGAACCGACTGTCAATGCTTAATAAGGAATTGAGCACTATGAAACTTGTACTGGAGGAATTTACCACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTGATAGAGATGAGGGTTCAAAGGCTCTGGAGATCCGAGTGGCAATGCTTGAAAACTACTTCGTATTAAAGATGCCATGGCGAGTACAGAAAAGAAAAAGAAAAAGAAACAGAAACAGAAAATAAAGGAATCTGCTCTTGGCTACAACAAATCACCTATGAGTCCGGCTCTCAAGCGTTGCAAACCCTTGACAAGGGATTCAACACTTGTAATGGAGGATTGTCCATTACTGATGACGCGTCGTTAGTCCGCCGTTAGTCCTCCTACCCCTATTTTAATACTTATTTCACCAAATACCCTTATTATGAAACATAATTCACCAAATATCCATAACTTAAAACTACCAATATTAATACTCAATGGCTAGGTTTTGTGTTTGAAAATTAGTCGTTACTTATTGTTTTCTTATAAATACTATTTTCTTTTCTGACTAGTAACATATAACAAGACAAGTGCTTAAAATTGTTATTTTCTTTTTTAACCCACCATGTTTCATTGGCTAGTCAAATCACCTTTCACAACCCAACAAAAATCAATTTACCCCCTCCGAAAATACAGCAGAAGAAGAAAAAAACAAACAACAATCGCAACTGAAAACTTCACTTCACTCCTCATCTTCTCTATCCGACTTGCGAGCCGAGCGATTAATGCATTCAAGGGTTTCACGACTAGCCGGCGCCGCGTATTTTCGGTGGTTGTCCACCGTTTCCACGGTGGCGCCGGCAGAAGCAGAGGAAATCTTCAGTGAAGCATGGAAGAAAGTGGTACCCCACGTAGACCCACCTAAAACTCCTCTCTCATTTATCCAACATCGACCTCCAATACCGACTTCAATACCTTCCAAACTCACCCTTAATTTCCATCTTCCCTACATTTCCCACCTTTCCAACAAAGAGGTTGATATGGTGATAGTGCCAGCAACAACTGGGCAGATGGGTGTTCTTCCGGGGCATACAGCAACCATGACAGAGTTGAAGCCGGGCATTCTCTCAATTCAGCAAGGCAACGAAACAACAAAGTATTTTGTCAGTGGTGGCTTTGCTTTCATCCATTCAAACTCTGTTGCAGACATAATCACAGTTGAGGCTGTTACTATTGATAAAATTGATCCAAACATGGTTAAAATAAAGCTTGCTGAATATTCACTGAAATTGAATACAGCCACAACAGATTATGAGAAAGCTGAAGCGCAAATTGGAGTAGATGTTCACAACGCCTTACAGTCTGCTCTCGCGGCCTAATATTTGCATTATCCTTTCCTGAAACATTTGACTGTCCAGTCTTCCTCAATGTACATGTGTCTAAGTGTATTGAAATTACAACTCTTTACCGATCTCTTTGGCCATAAGTTAGAACGAACATTGGTGCCAGTTTCTTGTGTTATTATCATGGCAAATGAATCTGTGAAAGAAAGTAGTTGGTAGTGTTTTTTTGGTGTGTACTTTCTCCTTGTTTCCTGCTACTATCAAATGCCTGTGGCTCGACAGCTCATCAACCACGGGCGTAGTTGGACCTAGCAGGTATTTTATGTTGAACAGCTTAAGCTTCCGTTAGACCGGTTTTAATCCGTAAACACATGATACTAACATTTTTACATGTCATGTGTCATCCTCTAGAGCATATTAGATGCACTCGGGTGTACCGTGTACCCTCTCACATTTTCTCTTTACATGTGAGGAAAAATGCGGCAGGGACTACCAATGGGTATAAAAATACCCTTGAGTACACAATATGACAATACACCCGGGTGCACCTAATAATTTTCAGTCATCTTCCCCCTCCTTGTTTCCTTTTTTTTTTAAAGCCACCACTCGATCTCAT

Coding sequence (CDS)

ATGCATTCAAGGGTTTCACGACTAGCCGGCGCCGCGTATTTTCGGTGGTTGTCCACCGTTTCCACGGTGGCGCCGGCAGAAGCAGAGGAAATCTTCAGTGAAGCATGGAAGAAAGTGGTACCCCACGTAGACCCACCTAAAACTCCTCTCTCATTTATCCAACATCGACCTCCAATACCGACTTCAATACCTTCCAAACTCACCCTTAATTTCCATCTTCCCTACATTTCCCACCTTTCCAACAAAGAGGTTGATATGGTGATAGTGCCAGCAACAACTGGGCAGATGGGTGTTCTTCCGGGGCATACAGCAACCATGACAGAGTTGAAGCCGGGCATTCTCTCAATTCAGCAAGGCAACGAAACAACAAAGTATTTTGTCAGTGGTGGCTTTGCTTTCATCCATTCAAACTCTGTTGCAGACATAATCACAGTTGAGGCTGTTACTATTGATAAAATTGATCCAAACATGGTTAAAATAAAGCTTGCTGAATATTCACTGAAATTGAATACAGCCACAACAGATTATGAGAAAGCTGAAGCGCAAATTGGAGTAGATGTTCACAACGCCTTACAGTCTGCTCTCGCGGCCTAA

Protein sequence

MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGVDVHNALQSALAA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11436.1	Spo11436.1	mRNA

Homology

[Close]

BLAST of Spo11436.1 vs. NCBI nr
Match: gi|902235781|gb|KNA24084.1| (hypothetical protein SOVF_018380 [Spinacia oleracea])

HSP 1 Score: 385.2 bits (988), Expect = 6.900e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1

		  
Query: 1   MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP 60
           MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP
Sbjct: 1   MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP 60

Query: 61  TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN 120
           TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN
Sbjct: 61  TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN 120

Query: 121 ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE 180
           ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE
Sbjct: 121 ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE 180

Query: 181 AQIGVDVHNALQSALAA 198
           AQIGVDVHNALQSALAA
Sbjct: 181 AQIGVDVHNALQSALAA 197

[Close]

BLAST of Spo11436.1 vs. NCBI nr
Match: gi|731360759|ref|XP_010691993.1| (PREDICTED: ATP synthase subunit delta', mitochondrial-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 298.9 bits (764), Expect = 6.500e-78
Identity = 151/195 (77.44%), Postives = 170/195 (87.18%), Query Frame = 1

		  
Query: 1   MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP 60
           M  R SR+AGAA FR  ST  T APAEAEE+F EAWKKVVPH++PPKTPLSFIQH PPIP
Sbjct: 1   MLPRASRIAGAAVFRRFSTGFTTAPAEAEEMFKEAWKKVVPHINPPKTPLSFIQHPPPIP 60

Query: 61  TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN 120
           TSIP+KL LN +LPY SHLSNK+VDMVI+PATTG+MG+ PGHTA MTELKPGILS+ +GN
Sbjct: 61  TSIPAKLILNLYLPYSSHLSNKQVDMVIMPATTGEMGIRPGHTAIMTELKPGILSLLEGN 120

Query: 121 ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE 180
           ETTKYFVSGGFAFIH NSVADIIT+EAV ID+IDPNMV+  +AE S KL++ATTDYEK E
Sbjct: 121 ETTKYFVSGGFAFIHPNSVADIITLEAVPIDRIDPNMVQKGIAELSQKLSSATTDYEKTE 180

Query: 181 AQIGVDVHNALQSAL 196
           AQIG+DVH ALQSAL
Sbjct: 181 AQIGIDVHTALQSAL 195

[Close]

BLAST of Spo11436.1 vs. NCBI nr
Match: gi|695025897|ref|XP_009400218.1| (PREDICTED: ATP synthase subunit delta', mitochondrial [Musa acuminata subsp. malaccensis])

HSP 1 Score: 250.0 bits (637), Expect = 3.500e-63
Identity = 124/185 (67.03%), Postives = 155/185 (83.78%), Query Frame = 1

		  
Query: 12  AYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPSKLTLNF 71
           A FR  ST    AP+E +  F EAW+KV P++DPPKTPL+F++ RPP P+SIPSKLT+NF
Sbjct: 22  ASFRPFSTDLPAAPSE-DTAFVEAWRKVAPNIDPPKTPLAFMKPRPPTPSSIPSKLTVNF 81

Query: 72  HLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKYFVSGGF 131
            +PY S +SNKEVDMVIVPATTGQMGVLPGH AT+ ELKPG+LS+ +GNE TKYFVS GF
Sbjct: 82  VIPYQSEISNKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNEVTKYFVSSGF 141

Query: 132 AFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGVDVHNAL 191
           AF+H+NSV DI+ VEAV +D+IDP++V+  LA+++ KLN+ATTD EKAEAQIGVDVH+AL
Sbjct: 142 AFVHANSVTDIVAVEAVPVDRIDPSLVQKGLADFTQKLNSATTDLEKAEAQIGVDVHSAL 201

Query: 192 QSALA 197
            +AL+
Sbjct: 202 NAALS 205

[Close]

BLAST of Spo11436.1 vs. NCBI nr
Match: gi|743778723|ref|XP_010919828.1| (PREDICTED: ATP synthase subunit delta', mitochondrial [Elaeis guineensis])

HSP 1 Score: 249.2 bits (635), Expect = 5.900e-63
Identity = 129/192 (67.19%), Postives = 157/192 (81.77%), Query Frame = 1

		  
Query: 4   RVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSI 63
           R  RL G A+    ST   VAP E +  F EAWKKV P+++PPKTPLSF++ RPP P+SI
Sbjct: 17  RGGRLIGRAF----STGVPVAPVE-DSAFVEAWKKVAPNLEPPKTPLSFMKPRPPTPSSI 76

Query: 64  PSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETT 123
           PSKLT+NF LPY S +SNKEVDMVIVPATTGQMGVLPGH AT+ ELKPG+LS+  GNE T
Sbjct: 77  PSKLTVNFVLPYQSEISNKEVDMVIVPATTGQMGVLPGHVATIAELKPGLLSVHDGNEVT 136

Query: 124 KYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQI 183
           KYFVS GFAFIH+NS+ADI+ VEAV +D+IDP++V+  LA+++ KL++ATTD EKAEAQI
Sbjct: 137 KYFVSSGFAFIHANSIADIVAVEAVPVDRIDPSLVQKGLADFTQKLSSATTDLEKAEAQI 196

Query: 184 GVDVHNALQSAL 196
           GVDVH+AL +AL
Sbjct: 197 GVDVHSALNAAL 203

[Close]

BLAST of Spo11436.1 vs. NCBI nr
Match: gi|965610738|dbj|BAT96877.1| (hypothetical protein VIGAN_09019000 [Vigna angularis var. angularis])

HSP 1 Score: 247.7 bits (631), Expect = 1.700e-62
Identity = 128/190 (67.37%), Postives = 154/190 (81.05%), Query Frame = 1

		  
Query: 6   SRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPS 65
           S L   A  R LST     P+ AE  F EAWKKV P++DPPKTPLSF++ RPPIP+++PS
Sbjct: 7   SALLSGASRRRLSTDVPATPS-AESSFVEAWKKVSPNLDPPKTPLSFLKERPPIPSTLPS 66

Query: 66  KLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKY 125
           KLT+NF LPY S LS KEVDMVIVPATTGQMGVLPGH AT+ ELKPG+LS+ +GN+ TKY
Sbjct: 67  KLTVNFVLPYASQLSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKY 126

Query: 126 FVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGV 185
           FVS GFAF+H+NSVADI+ VEAV ID+ID N+V+  L +++ KLN+A+TD EKAEAQIGV
Sbjct: 127 FVSSGFAFVHANSVADIVAVEAVPIDRIDANLVQKGLQDFTQKLNSASTDLEKAEAQIGV 186

Query: 186 DVHNALQSAL 196
           DVH+AL SAL
Sbjct: 187 DVHSALNSAL 195

[Close]

BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYR6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018380 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 4.800e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1

		  
Query: 1   MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP 60
           MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP
Sbjct: 1   MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP 60

Query: 61  TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN 120
           TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN
Sbjct: 61  TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN 120

Query: 121 ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE 180
           ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE
Sbjct: 121 ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE 180

Query: 181 AQIGVDVHNALQSALAA 198
           AQIGVDVHNALQSALAA
Sbjct: 181 AQIGVDVHNALQSALAA 197

[Close]

BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E9X1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017300 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.500e-78
Identity = 151/195 (77.44%), Postives = 170/195 (87.18%), Query Frame = 1

		  
Query: 1   MHSRVSRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIP 60
           M  R SR+AGAA FR  ST  T APAEAEE+F EAWKKVVPH++PPKTPLSFIQH PPIP
Sbjct: 1   MLPRASRIAGAAVFRRFSTGFTTAPAEAEEMFKEAWKKVVPHINPPKTPLSFIQHPPPIP 60

Query: 61  TSIPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGN 120
           TSIP+KL LN +LPY SHLSNK+VDMVI+PATTG+MG+ PGHTA MTELKPGILS+ +GN
Sbjct: 61  TSIPAKLILNLYLPYSSHLSNKQVDMVIMPATTGEMGIRPGHTAIMTELKPGILSLLEGN 120

Query: 121 ETTKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAE 180
           ETTKYFVSGGFAFIH NSVADIIT+EAV ID+IDPNMV+  +AE S KL++ATTDYEK E
Sbjct: 121 ETTKYFVSGGFAFIHPNSVADIITLEAVPIDRIDPNMVQKGIAELSQKLSSATTDYEKTE 180

Query: 181 AQIGVDVHNALQSAL 196
           AQIG+DVH ALQSAL
Sbjct: 181 AQIGIDVHTALQSAL 195

[Close]

BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
Match: M0SXZ3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.400e-63
Identity = 124/185 (67.03%), Postives = 155/185 (83.78%), Query Frame = 1

		  
Query: 12  AYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPSKLTLNF 71
           A FR  ST    AP+E +  F EAW+KV P++DPPKTPL+F++ RPP P+SIPSKLT+NF
Sbjct: 22  ASFRPFSTDLPAAPSE-DTAFVEAWRKVAPNIDPPKTPLAFMKPRPPTPSSIPSKLTVNF 81

Query: 72  HLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKYFVSGGF 131
            +PY S +SNKEVDMVIVPATTGQMGVLPGH AT+ ELKPG+LS+ +GNE TKYFVS GF
Sbjct: 82  VIPYQSEISNKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNEVTKYFVSSGF 141

Query: 132 AFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGVDVHNAL 191
           AF+H+NSV DI+ VEAV +D+IDP++V+  LA+++ KLN+ATTD EKAEAQIGVDVH+AL
Sbjct: 142 AFVHANSVTDIVAVEAVPVDRIDPSLVQKGLADFTQKLNSATTDLEKAEAQIGVDVHSAL 201

Query: 192 QSALA 197
            +AL+
Sbjct: 202 NAALS 205

[Close]

BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
Match: A0A0S3SVH3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G019000 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.200e-62
Identity = 128/190 (67.37%), Postives = 154/190 (81.05%), Query Frame = 1

		  
Query: 6   SRLAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPS 65
           S L   A  R LST     P+ AE  F EAWKKV P++DPPKTPLSF++ RPPIP+++PS
Sbjct: 7   SALLSGASRRRLSTDVPATPS-AESSFVEAWKKVSPNLDPPKTPLSFLKERPPIPSTLPS 66

Query: 66  KLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKY 125
           KLT+NF LPY S LS KEVDMVIVPATTGQMGVLPGH AT+ ELKPG+LS+ +GN+ TKY
Sbjct: 67  KLTVNFVLPYASQLSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKY 126

Query: 126 FVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGV 185
           FVS GFAF+H+NSVADI+ VEAV ID+ID N+V+  L +++ KLN+A+TD EKAEAQIGV
Sbjct: 127 FVSSGFAFVHANSVADIVAVEAVPIDRIDANLVQKGLQDFTQKLNSASTDLEKAEAQIGV 186

Query: 186 DVHNALQSAL 196
           DVH+AL SAL
Sbjct: 187 DVHSALNSAL 195

[Close]

BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
Match: W9QU14_9ROSA (ATP synthase subunit delta OS=Morus notabilis GN=L484_008025 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.700e-62
Identity = 122/177 (68.93%), Postives = 149/177 (84.18%), Query Frame = 1

		  
Query: 21  STVAPAE--AEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPSKLTLNFHLPYISH 80
           ST  PA    +  F+EAWKKV+P+++PPKTPLSF+Q RPPIP+S+PSKLT+NF LPY S 
Sbjct: 24  STDVPAAQTGDSAFAEAWKKVIPNIEPPKTPLSFMQPRPPIPSSVPSKLTVNFVLPYASE 83

Query: 81  LSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKYFVSGGFAFIHSNS 140
           LS KEVDMVI+PATTGQMGVLPGH +T+ ELKPG+LS+ +GN+ TKYFVS GFAFIH+NS
Sbjct: 84  LSAKEVDMVIIPATTGQMGVLPGHVSTIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANS 143

Query: 141 VADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGVDVHNALQSAL 196
             DII VEAV +D+IDPN V+  LAE++ KL++ATTD EKAEAQIGVD+H+AL SAL
Sbjct: 144 FTDIIAVEAVPLDRIDPNQVQKGLAEFTQKLSSATTDLEKAEAQIGVDMHSALNSAL 200

[Close]

BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
Match: ATP4_IPOBA (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.000e-63
Identity = 124/190 (65.26%), Postives = 152/190 (80.00%), Query Frame = 1

		  
Query: 8   LAGAAYFRWLSTVSTVAPAE--AEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPS 67
           LA A    W    ST  PAE  A+  F EAWKK++P+VDPPKTP +++  RP  P+SIPS
Sbjct: 9   LARATTMGWRRPFSTDLPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRPATPSSIPS 68

Query: 68  KLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKY 127
           KLT+NF LPY S L+ KEVDMVI+PATTGQMGVLPGH AT+ ELKPG++S+ +GN+ +KY
Sbjct: 69  KLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKY 128

Query: 128 FVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGV 187
           FVSGGFAFIH+NS ADII VEAV +D+ID N+V+  LAE++ KLNTA+TD EKAEAQIGV
Sbjct: 129 FVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGV 188

Query: 188 DVHNALQSAL 196
           DVH+AL +AL
Sbjct: 189 DVHSALNAAL 198

[Close]

BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
Match: ATP4_PEA (ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.300e-57
Identity = 114/188 (60.64%), Postives = 148/188 (78.72%), Query Frame = 1

		  
Query: 8   LAGAAYFRWLSTVSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTSIPSKL 67
           L+ A+  R  ST   VA       F EAW+KV P++DPPKTPL F++ RPP+P++IP+KL
Sbjct: 10  LSRASATRRFST--DVATPATNSSFVEAWRKVSPNIDPPKTPLEFLKTRPPVPSTIPTKL 69

Query: 68  TLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKYFV 127
           T+NF LPY S L+ KEVD VI+PATTG+MGVLPGH AT+ ELKPG+L++Q+G +TTKYFV
Sbjct: 70  TVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFV 129

Query: 128 SGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGVDV 187
           S GF FIH+NSVADII VEAV ++++D ++V+  L E++ KLN+ATTD EK EAQIG+DV
Sbjct: 130 SSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDV 189

Query: 188 HNALQSAL 196
            +AL SAL
Sbjct: 190 DSALNSAL 195

[Close]

BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
Match: ATP4_ARATH (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.700e-57
Identity = 114/194 (58.76%), Postives = 150/194 (77.32%), Query Frame = 1

		  
Query: 5   VSRLAGAAYFRWLST--VSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTS 64
           +SR   AA  + ++T   ST  P+  +  F EAWKKV P++DPP+TP +F++ RP  P+S
Sbjct: 9   LSRSVAAASSKSVTTRAFSTELPSTLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSS 68

Query: 65  IPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNET 124
           IP+KLT+NF LPY S L+ KEVDMVI+PA+TGQMGVLPGH  T+ ELKPGI+S+ +G + 
Sbjct: 69  IPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDV 128

Query: 125 TKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQ 184
            KYF+S GFAF+H+NSVADII VEAV +D IDP+ V+  LAE+  KL +ATTD EKAEAQ
Sbjct: 129 KKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQ 188

Query: 185 IGVDVHNALQSALA 197
           IGV+VH+A+ +AL+
Sbjct: 189 IGVEVHSAINAALS 202

[Close]

BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
Match: ATPD_AGABI (ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.200e-16
Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 1

		  
Query: 63  IPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNET 122
           I  KL L+  LP+ +  S+++V  V +PA +G MG+L  H  ++  L+PG++ + + + +
Sbjct: 28  ISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGS 87

Query: 123 TKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQ 182
            K+FVSGGFA +H N+   I  VEA  ++      ++  L E +     + ++ +K EAQ
Sbjct: 88  QKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQ 147

Query: 183 IGVDVHNALQSALA 197
           I  +V+ ALQ ALA
Sbjct: 148 IEAEVYEALQHALA 161

[Close]

BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
Match: ATPD_KLULA (ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ATP16 PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 4.200e-16
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1

		  
Query: 67  LTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNETTKYF 126
           L L F LP+ +  S   V  V +PA +GQ+G+L  H  T+ +L PG++ + +G+ + K+F
Sbjct: 31  LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFF 90

Query: 127 VSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQIGVD 186
           VSGGFA +  +S   I +VEA  ++   P  V+  LAE    +++A  +   AEA I ++
Sbjct: 91  VSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSA-DEVAAAEAAIQLE 150

Query: 187 VHNALQSAL 196
           V  ALQ+AL
Sbjct: 151 VLEALQAAL 158

[Close]

BLAST of Spo11436.1 vs. TAIR (Arabidopsis)
Match: AT5G47030.1 (ATPase, F1 complex, delta/epsilon subunit)

HSP 1 Score: 223.8 bits (569), Expect = 9.400e-59
Identity = 114/194 (58.76%), Postives = 150/194 (77.32%), Query Frame = 1

		  
Query: 5   VSRLAGAAYFRWLST--VSTVAPAEAEEIFSEAWKKVVPHVDPPKTPLSFIQHRPPIPTS 64
           +SR   AA  + ++T   ST  P+  +  F EAWKKV P++DPP+TP +F++ RP  P+S
Sbjct: 9   LSRSVAAASSKSVTTRAFSTELPSTLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSS 68

Query: 65  IPSKLTLNFHLPYISHLSNKEVDMVIVPATTGQMGVLPGHTATMTELKPGILSIQQGNET 124
           IP+KLT+NF LPY S L+ KEVDMVI+PA+TGQMGVLPGH  T+ ELKPGI+S+ +G + 
Sbjct: 69  IPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDV 128

Query: 125 TKYFVSGGFAFIHSNSVADIITVEAVTIDKIDPNMVKIKLAEYSLKLNTATTDYEKAEAQ 184
            KYF+S GFAF+H+NSVADII VEAV +D IDP+ V+  LAE+  KL +ATTD EKAEAQ
Sbjct: 129 KKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQ 188

Query: 185 IGVDVHNALQSALA 197
           IGV+VH+A+ +AL+
Sbjct: 189 IGVEVHSAINAALS 202

The following BLAST results are available for this feature:

BLAST of Spo11436.1 vs. NCBI nr
BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
BLAST of Spo11436.1 vs. TAIR (Arabidopsis)

BLAST of Spo11436.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902235781\|gb\|KNA24084.1\|	6.9e-104	100.	hypothetical protein SOVF_0183...	[more]
gi\|731360759\|ref\|XP_010691993.1\|	6.5e-78	77.4	PREDICTED: ATP synthase subuni...	[more]
gi\|695025897\|ref\|XP_009400218.1\|	3.5e-63	67.0	PREDICTED: ATP synthase subuni...	[more]
gi\|743778723\|ref\|XP_010919828.1\|	5.9e-63	67.1	PREDICTED: ATP synthase subuni...	[more]
gi\|965610738\|dbj\|BAT96877.1\|	1.7e-62	67.3	hypothetical protein VIGAN_090...	[more]

BLAST of Spo11436.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RYR6_SPIOL	4.8e-104	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8E9X1_BETVU	4.5e-78	77.4	Uncharacterized protein OS=Bet...	[more]
M0SXZ3_MUSAM	2.4e-63	67.0	Uncharacterized protein OS=Mus...	[more]
A0A0S3SVH3_PHAAN	1.2e-62	67.3	Uncharacterized protein OS=Vig...	[more]
W9QU14_9ROSA	2.7e-62	68.9	ATP synthase subunit delta OS=...	[more]

BLAST of Spo11436.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
ATP4_IPOBA	2.0e-63	65.2	ATP synthase subunit delta', m...	[more]
ATP4_PEA	1.3e-57	60.6	ATP synthase subunit delta', m...	[more]
ATP4_ARATH	1.7e-57	58.7	ATP synthase subunit delta', m...	[more]
ATPD_AGABI	3.2e-16	35.0	ATP synthase subunit delta, mi...	[more]
ATPD_KLULA	4.2e-16	37.9	ATP synthase subunit delta, mi...	[more]

BLAST of Spo11436.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT5G47030.1	9.4e-59	58.7	ATPase, F1 complex, delta/epsi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001469	ATPase, F1 complex, delta/epsilon subunit	HAMAP	MF_00530	ATP_synth_epsil_bac	coord: 65..185 score: 13
IPR001469	ATPase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 1..195 score: 1.0
IPR001469	ATPase, F1 complex, delta/epsilon subunit	TIGRFAMs	TIGR01216	TIGR01216	coord: 81..183 score: 2.4
IPR020546	ATPase, F1 complex, delta/epsilon subunit, N-terminal	PRODOM	PD000944		coord: 73..153 score: 2.0
IPR020546	ATPase, F1 complex, delta/epsilon subunit, N-terminal	GENE3D	2.60.15.10		coord: 57..153 score: 9.4
IPR020546	ATPase, F1 complex, delta/epsilon subunit, N-terminal	PFAM	PF02823	ATP-synt_DE_N	coord: 80..139 score: 1.1
IPR020546	ATPase, F1 complex, delta/epsilon subunit, N-terminal	unknown	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	coord: 67..148 score: 5.75
None	No IPR available	unknown	Coil	Coil	coord: 162..182 scor
None	No IPR available	GENE3D	1.20.5.440		coord: 154..195 score: 1.
None	No IPR available	PANTHER	PTHR13822:SF7	ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL	coord: 1..195 score: 1.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0010048	vernalization response
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0097031	obsolete mitochondrial respiratory chain complex I biogenesis
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0006397	mRNA processing
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0097034	obsolete mitochondrial respiratory chain complex IV biogenesis
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0006833	water transport
biological_process	GO:0007030	Golgi organization
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0009536	plastid
cellular_component	GO:0005730	nucleolus
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05640	0.69	Barchart \| Table
Spo23283	0.67	Barchart \| Table
Spo22253	0.67	Barchart \| Table
Spo22507	0.67	Barchart \| Table
Spo00400	0.66	Barchart \| Table
Spo00013	0.66	Barchart \| Table
Spo02513	0.66	Barchart \| Table
Spo04483	0.65	Barchart \| Table