Spo11445 (gene)

Overview
NameSpo11445
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibosomal L18p/L5e family protein
LocationSpoScf_00676 : 167295 .. 169918 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGTCTAACCATTTATAAACCCAACAACTTTATCTACAGAAGCTTTAGAAATTAGAACAAACTGCAGCAAATGACACTTCTCCCGAGTCTCGTATGAGTATACGTATATTGCAACTTCATCTCTGGTTAGTGTATTTTCTCTCTCTTACTTGTTCATTTTCTGTTTTCTTTCTTTAATCTTATACTGAACTAATGTTTCTGTTATCGAAATACTGTAATTTGTTCCCAATTTAGACCAATTTTGCGTTTTAATTCTATTGCTTATCATGTTCAGTCAGTTCATTGATAAATTAATTGAAAGAAACTGAAGTAATTATAGTTTTGGATGATTTCCTGCTCATTTGGGGGAGGGGGAAGTAAGTTTTAATTTGAGTGAATTTTATTTTCGGTAGAAATACTTGAATCAAAATCTGTATTGAAATTACAGGAATTTCCTATAAATCTGAAAGAGGATGGCTTGTAGTATATCGGCTAGTACATTTCTCATATCTTCAGACTTTTTTCGACCTCGAATCAACAAACCCACTTCGTTATCATGGTCTTCTTCCATGCCTCAATTGAATCTCTCACTCAATTCCAGAACTAATTTGTCAAATTCCACTCCCAAACAGGTACTATTTACTGCTTCATTGTCCAACATTTATGTATGCGTCGTCTTTTATCGGAGTATTACTTTCGTCTAGATTTGGTTGTCAAATTGATTCCGGACGAAGGGAGTATGTTTACCCATCTGTTGTGCTTCGGTTTCTACTTTCAATTTAAAATGCTGTGTTGGGACTATTGAAATTGATAGTTAGTGCTTGCTACATTTTGTGTCAAAATAATTGGCAACATTTGAAATTTGGGGATAAAAGTGCCGCGTTCTATTCACCTGATTTCCAATTATTTTTCCTGAAGTTATCTTATCTGAACTTATCTGAACTTGTCTAAACTTATTAGAACTTATCAAAACTTATTTTAGTTATAAATTGTATTTGGCCAACCTTATTTTTCCTGAACTTATCTTATCTGAACTTATCTGAACTTGACTGAACTTATCTGAACTTATTTTTCCTGAAATAAGTGGAAATAAGGTGAACAGAACAAGCTATTTTTGATGTGAAATTGTGAAGTATTTCGTTTAGGAAGTAAATTATTATGAGATTATCATTATACGGTTTTTATCATGATATGAATTAAGCAGTAACAACATTTATAAGATTGGACAACAAAAATTAAATGTGGCTTCTTGTATAAAGACGAGGAAGTATTTCAAGAAGTATGTTTGACAATGTTGTGTACAATTTCATTGTACTTGTTGCCTTTGTTGGTCTAAAACGATATATATTGTGTCACACGAAATGAGATCACGTTTCTTCATCCATCCAAGCATGCTTCATTGCTCCATATGAAACTCTTAGGAGGAGGCTTGTCATTTTGATTCTTTTGCAATATAGGTACTCTGTTGGCTTTTCTGCAGTCATCATTCAGGTGGTTGTGCAATGTGTCTGGTTGAGATGGTTGTGCTAGTCTAGTTGTGAAAAAAGTGAGCTTATTACTATTGTGTTTAGGCGAAAGCAATGTTCTTTCTTTCCACACTTCATGTGAGATATGATCATCTTTTGATGTCAATGATAAGTACAACTGTTTGTACTTGTATGTAATTAAATCAGAATGACCAATTTGGTGCATTACTCTCTAATAGCAAAAATTTAAACAATCATGGCTAAATGAAAAAAAAGTCCTTTTGCCTAGTTCTTTAGGGAACATTACGGGGAGTGAAATGCCTTATATACCTTTAAGGAGTAGCTGTGGTCGGAGACTTGGAGTTGGGGTAGAGCTCTGTTGATATTGCACATCTTTGCACCGTGCTATTAGCCAGACTGAAATGTATTTAGGAGTCGAATAGATGGTTTAGCTGGGATCGATATATTCTTATGCGCATTAGTCTATACATCGAAAGCCATGTCTGTTGCAATTGTACTGGCTGATCTGAATTTGAGTTTATACATGTAGGACTTTGTTGTTCAAGCAGCCTGGACCAGGAGATCTCGAGGAGAACCAAAGAAAAGCGGAAGGAAATCATGGAAACAACGGACTGATATGTACTTGAGACCTTTTCTGCTGAATGTTTACTTCTCAAAGAGGTTCATACAAGCCAAAGTGATGCACCGTGGAACCAGCAAAGTGATATCTGTTGCCACCACAAATTCTAAGGATTTAAGAACTACCTTGCCATCTCTTCTTGATACTAATGCTTGTAGAGTCATGGGCAAGCTAATAGCTGAACGATCAAAAGAAGCCGATGTATATGCCATGGCCTATGAGCCTAGGAAAGATGAGCGGATTGAGGGTAAACTTGGTATTATCCTGGATACCATCAAAGAAAACGGGATCATTTTTGTAGACTAATTTTACCACATTTTCTAGCTATGGTGTTGTCTGAAATTATGAGCTTAATCTTTTCTTAATCATATTTTACATGTTTCAATCACAACATGAGTTTAATCTTTTCTTAATCTGACTTCAATTTCGGGCAAACATATTTTCTTAATCATATTATTGGAATGTGACTTGTTTTAGGGACGAAGTAGTCTCGGTAATGGATACTGATCAATTAGTGAAGTTGAGAAATAAAAGAGGC

mRNA sequence

GCAGTCTAACCATTTATAAACCCAACAACTTTATCTACAGAAGCTTTAGAAATTAGAACAAACTGCAGCAAATGACACTTCTCCCGAGTCTCGTATGAGTATACGTATATTGCAACTTCATCTCTGGAATTTCCTATAAATCTGAAAGAGGATGGCTTGTAGTATATCGGCTAGTACATTTCTCATATCTTCAGACTTTTTTCGACCTCGAATCAACAAACCCACTTCGTTATCATGGTCTTCTTCCATGCCTCAATTGAATCTCTCACTCAATTCCAGAACTAATTTGTCAAATTCCACTCCCAAACAGGACTTTGTTGTTCAAGCAGCCTGGACCAGGAGATCTCGAGGAGAACCAAAGAAAAGCGGAAGGAAATCATGGAAACAACGGACTGATATGTACTTGAGACCTTTTCTGCTGAATGTTTACTTCTCAAAGAGGTTCATACAAGCCAAAGTGATGCACCGTGGAACCAGCAAAGTGATATCTGTTGCCACCACAAATTCTAAGGATTTAAGAACTACCTTGCCATCTCTTCTTGATACTAATGCTTGTAGAGTCATGGGCAAGCTAATAGCTGAACGATCAAAAGAAGCCGATGTATATGCCATGGCCTATGAGCCTAGGAAAGATGAGCGGATTGAGGGTAAACTTGGTATTATCCTGGATACCATCAAAGAAAACGGGATCATTTTTGTAGACTAATTTTACCACATTTTCTAGCTATGGTGTTGTCTGAAATTATGAGCTTAATCTTTTCTTAATCATATTTTACATGTTTCAATCACAACATGAGTTTAATCTTTTCTTAATCTGACTTCAATTTCGGGCAAACATATTTTCTTAATCATATTATTGGAATGTGACTTGTTTTAGGGACGAAGTAGTCTCGGTAATGGATACTGATCAATTAGTGAAGTTGAGAAATAAAAGAGGC

Coding sequence (CDS)

ATGGCTTGTAGTATATCGGCTAGTACATTTCTCATATCTTCAGACTTTTTTCGACCTCGAATCAACAAACCCACTTCGTTATCATGGTCTTCTTCCATGCCTCAATTGAATCTCTCACTCAATTCCAGAACTAATTTGTCAAATTCCACTCCCAAACAGGACTTTGTTGTTCAAGCAGCCTGGACCAGGAGATCTCGAGGAGAACCAAAGAAAAGCGGAAGGAAATCATGGAAACAACGGACTGATATGTACTTGAGACCTTTTCTGCTGAATGTTTACTTCTCAAAGAGGTTCATACAAGCCAAAGTGATGCACCGTGGAACCAGCAAAGTGATATCTGTTGCCACCACAAATTCTAAGGATTTAAGAACTACCTTGCCATCTCTTCTTGATACTAATGCTTGTAGAGTCATGGGCAAGCTAATAGCTGAACGATCAAAAGAAGCCGATGTATATGCCATGGCCTATGAGCCTAGGAAAGATGAGCGGATTGAGGGTAAACTTGGTATTATCCTGGATACCATCAAAGAAAACGGGATCATTTTTGTAGACTAA

Protein sequence

MACSISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIFVD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11445.1Spo11445.1mRNA


Homology
[Close]
BLAST of Spo11445.1 vs. NCBI nr
Match: gi|731360735|ref|XP_010691979.1| (PREDICTED: uncharacterized protein LOC104905219 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 325.9 bits (834), Expect = 4.700e-86
Identity = 163/184 (88.59%), Postives = 177/184 (96.20%), Query Frame = 1 

		  

Query: 1   MACSISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAA 60
           M+CSIS+S FL+SSD FRPR+NKPTSLSWSSS+PQLNLSLNSRTNLSNST +QDFVVQAA
Sbjct: 1   MSCSISSSAFLVSSDLFRPRLNKPTSLSWSSSLPQLNLSLNSRTNLSNSTTRQDFVVQAA 60

Query: 61  WTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSK 120
           WTRRSRGEPKKSGRKSWKQRTDMY+RPFLLNVYFSKRF+ AKVMHRGTSKVISVATTN+K
Sbjct: 61  WTRRSRGEPKKSGRKSWKQRTDMYMRPFLLNVYFSKRFVHAKVMHRGTSKVISVATTNAK 120

Query: 121 DLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 180
           DLRTTLPSL+D NACRV+GKLIAERS EADVYA+AYEPRK ERIEGKLGI+LDTIKE+GI
Sbjct: 121 DLRTTLPSLIDNNACRVVGKLIAERSIEADVYALAYEPRKGERIEGKLGIVLDTIKEHGI 180

Query: 181 IFVD 185
           IFVD
Sbjct: 181 IFVD 184
[Close]
BLAST of Spo11445.1 vs. NCBI nr
Match: gi|902235770|gb|KNA24073.1| (hypothetical protein SOVF_018290 [Spinacia oleracea])

HSP 1 Score: 297.0 bits (759), Expect = 2.300e-77
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 33  MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 92
           MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV
Sbjct: 1   MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 60

Query: 93  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 152
           YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY
Sbjct: 61  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 120

Query: 153 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 185
           AMAYEPRKDERIEGKLGIILDTIKENGIIFVD
Sbjct: 121 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 152
[Close]
BLAST of Spo11445.1 vs. NCBI nr
Match: gi|297744840|emb|CBI38108.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 249.6 bits (636), Expect = 4.200e-63
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1 

		  

Query: 4   SISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTR 63
           SIS+S  L S+D F+ R  KPTSLSWSSS P +N+  NS TN S  +  +  VVQAAWTR
Sbjct: 17  SISSSPCLFSTDLFQSRSLKPTSLSWSSSFPNINIFTNSITNPSLPSLNKCLVVQAAWTR 76

Query: 64  RSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDL 123
           RSR E  K+  RKSWKQ+TDMY+RPFLLNV+FSKRFI AKVMHR TSKVISVATTNSKDL
Sbjct: 77  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 136

Query: 124 RTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R TL SL D NACRV+GKLIAERS EADV+AM+YEPRKDERIEGKLGI+LDTIKENGIIF
Sbjct: 137 RNTLSSLTDHNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGIIF 196
[Close]
BLAST of Spo11445.1 vs. NCBI nr
Match: gi|225454046|ref|XP_002263231.1| (PREDICTED: uncharacterized protein LOC100246602 [Vitis vinifera])

HSP 1 Score: 249.6 bits (636), Expect = 4.200e-63
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1 

		  

Query: 4   SISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTR 63
           SIS+S  L S+D F+ R  KPTSLSWSSS P +N+  NS TN S  +  +  VVQAAWTR
Sbjct: 3   SISSSPCLFSTDLFQSRSLKPTSLSWSSSFPNINIFTNSITNPSLPSLNKCLVVQAAWTR 62

Query: 64  RSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDL 123
           RSR E  K+  RKSWKQ+TDMY+RPFLLNV+FSKRFI AKVMHR TSKVISVATTNSKDL
Sbjct: 63  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 122

Query: 124 RTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R TL SL D NACRV+GKLIAERS EADV+AM+YEPRKDERIEGKLGI+LDTIKENGIIF
Sbjct: 123 RNTLSSLTDHNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGIIF 182
[Close]
BLAST of Spo11445.1 vs. NCBI nr
Match: gi|1000938867|ref|XP_015583493.1| (PREDICTED: 50S ribosomal protein L18 isoform X1 [Ricinus communis])

HSP 1 Score: 240.7 bits (613), Expect = 2.000e-60
Identity = 131/185 (70.81%), Postives = 150/185 (81.08%), Query Frame = 1 

		  

Query: 2   ACSISA--STFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQA 61
           ACS +A   +  IS+D    R ++P SLSW SS P  N+S N+ +    S  K  F +QA
Sbjct: 11  ACSAAALSGSLTISTDSLSTRSSRPNSLSWVSSFPTFNISTNTTSPSLPSLNKNSF-IQA 70

Query: 62  AWTRRSRGE-PKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTN 121
           AWTRRSRGE  K+  RKSWKQRTDMY+RPFLLNV+FSKRFI AKVMHRGTSKVISVATTN
Sbjct: 71  AWTRRSRGELAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVISVATTN 130

Query: 122 SKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKEN 181
           +KDLR TLPSL D +ACRV+G+LIAERSKEADVYA+AYEPRK+ERIEGKLGI+LDTIKEN
Sbjct: 131 AKDLRNTLPSLTDHDACRVVGRLIAERSKEADVYAIAYEPRKNERIEGKLGIVLDTIKEN 190

Query: 182 GIIFV 184
           GIIFV
Sbjct: 191 GIIFV 194
[Close]
BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIF9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017190 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.200e-86
Identity = 163/184 (88.59%), Postives = 177/184 (96.20%), Query Frame = 1 

		  

Query: 1   MACSISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAA 60
           M+CSIS+S FL+SSD FRPR+NKPTSLSWSSS+PQLNLSLNSRTNLSNST +QDFVVQAA
Sbjct: 1   MSCSISSSAFLVSSDLFRPRLNKPTSLSWSSSLPQLNLSLNSRTNLSNSTTRQDFVVQAA 60

Query: 61  WTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSK 120
           WTRRSRGEPKKSGRKSWKQRTDMY+RPFLLNVYFSKRF+ AKVMHRGTSKVISVATTN+K
Sbjct: 61  WTRRSRGEPKKSGRKSWKQRTDMYMRPFLLNVYFSKRFVHAKVMHRGTSKVISVATTNAK 120

Query: 121 DLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 180
           DLRTTLPSL+D NACRV+GKLIAERS EADVYA+AYEPRK ERIEGKLGI+LDTIKE+GI
Sbjct: 121 DLRTTLPSLIDNNACRVVGKLIAERSIEADVYALAYEPRKGERIEGKLGIVLDTIKEHGI 180

Query: 181 IFVD 185
           IFVD
Sbjct: 181 IFVD 184
[Close]
BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RX83_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018290 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.600e-77
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 33  MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 92
           MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV
Sbjct: 1   MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 60

Query: 93  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 152
           YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY
Sbjct: 61  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 120

Query: 153 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 185
           AMAYEPRKDERIEGKLGIILDTIKENGIIFVD
Sbjct: 121 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 152
[Close]
BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: F6I1H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0045g01340 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.000e-63
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1 

		  

Query: 4   SISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTR 63
           SIS+S  L S+D F+ R  KPTSLSWSSS P +N+  NS TN S  +  +  VVQAAWTR
Sbjct: 3   SISSSPCLFSTDLFQSRSLKPTSLSWSSSFPNINIFTNSITNPSLPSLNKCLVVQAAWTR 62

Query: 64  RSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDL 123
           RSR E  K+  RKSWKQ+TDMY+RPFLLNV+FSKRFI AKVMHR TSKVISVATTNSKDL
Sbjct: 63  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 122

Query: 124 RTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R TL SL D NACRV+GKLIAERS EADV+AM+YEPRKDERIEGKLGI+LDTIKENGIIF
Sbjct: 123 RNTLSSLTDHNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGIIF 182
[Close]
BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: A0A068ULF3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028699001 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.100e-60
Identity = 128/178 (71.91%), Postives = 147/178 (82.58%), Query Frame = 1 

		  

Query: 9   TFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLS--NSTPKQDFVVQAAWTRRSR 68
           +F ++S F       P SLSWSSS+P+LNLS+ + +  S  N   KQ FVV+AAWTRRSR
Sbjct: 12  SFTLASQFISTGKENPASLSWSSSLPKLNLSITTTSPSSPLNLLHKQTFVVEAAWTRRSR 71

Query: 69  GEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTT 128
            E  KK  RKSWKQRTDMY+RPFLLNV+FSKRFI AKVMHRGTSKVISVATTN+KDLR T
Sbjct: 72  SEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVISVATTNAKDLRNT 131

Query: 129 LPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIFV 184
           LPSL D NACRV+GKLIAERSKEADV+A+AYEP K++RIEG+L IILDTI+ENGIIFV
Sbjct: 132 LPSLTDNNACRVIGKLIAERSKEADVFAIAYEPDKNQRIEGRLAIILDTIQENGIIFV 189
[Close]
BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: U5FXQ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.400e-59
Identity = 131/192 (68.23%), Postives = 154/192 (80.21%), Query Frame = 1 

		  

Query: 1   MACSISASTFL-----ISSDFF---RPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPK 60
           MAC IS+S  L     +S+D       R  KP S+SW SS P +N+S+N   N  +S  K
Sbjct: 1   MACIISSSAALSTRSLLSTDSIPTQSSRSIKPNSISWVSSFPTINISIN---NNPSSLNK 60

Query: 61  QDFVVQAAWTRRSRGE-PKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKV 120
             F+ QAAWTRRSRGE  KK  +KSWKQRT+MY++PFLLNV+FS++FIQAKVMHRGTSKV
Sbjct: 61  NSFI-QAAWTRRSRGELEKKPNKKSWKQRTEMYMKPFLLNVFFSRKFIQAKVMHRGTSKV 120

Query: 121 ISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGII 180
           ISVATTN+KDLR +LPSL D NACR++GKLIAERSKEADVYAM+YEPRKDERIEGKLGI+
Sbjct: 121 ISVATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIV 180

Query: 181 LDTIKENGIIFV 184
           +DTIKENGIIFV
Sbjct: 181 IDTIKENGIIFV 188
[Close]
BLAST of Spo11445.1 vs. ExPASy Swiss-Prot
Match: RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.100e-6
Identity = 33/98 (33.67%), Postives = 59/98 (60.20%), Query Frame = 1 

		  

Query: 85  LRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAE 144
           L+   L V+ +   I A+V+    S+V++ A+T   D+R+ LP+  +  A +V+GKLIAE
Sbjct: 21  LKSVRLTVFRTNSHIYAQVIDGSGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAE 80

Query: 145 RSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R+K A V A+A++ R   +  G++  + +  +E G+ F
Sbjct: 81  RAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLKF 117
[Close]
BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.000e-58
Identity = 120/188 (63.83%), Postives = 149/188 (79.26%), Query Frame = 1 

		  

Query: 1   MACSISASTFLISSDFFRPRINKPTSL----SWSSSMPQLNLSLNSRTNLSNSTPKQDFV 60
           M+C IS++  L+  D    R N+ T L    SW SS P+L++ + S   +S+   K+D  
Sbjct: 1   MSCLISSTCSLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSV--ISSPIVKKDSF 60

Query: 61  VQAAWTRRSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVA 120
           VQAAWTRRSRGE  K+  RKSWKQRTDMY+RPFLLNV+FS++FI AKVMHR TSKVISVA
Sbjct: 61  VQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVA 120

Query: 121 TTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTI 180
           TTN++D+RT +PSL+D  ACR++GKLIAERS EADVYA++YEPRK ERIEGKLGI++DTI
Sbjct: 121 TTNARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTI 180

Query: 181 KENGIIFV 184
           KE+GIIFV
Sbjct: 181 KEHGIIFV 186
[Close]
BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 104.4 bits (259), Expect = 7.800e-23
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = 1 

		  

Query: 76  SWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNAC 135
           S+KQRT  Y+ PF L+V+ SKRF+ A + HR T + ++VA TNSKD++  L S  D  AC
Sbjct: 123 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 182

Query: 136 RVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 181
             +G++++ER+KEADVY  +Y PR  ++ EGK+  ++ ++ +NGI
Sbjct: 183 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227
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BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 87.4 bits (215), Expect = 9.800e-18
Identity = 44/111 (39.64%), Postives = 73/111 (65.77%), Query Frame = 1 

		  

Query: 70  KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSL 129
           K+    ++ Q T  +  PF L++Y SK  ++A V+HR TSKV++VA + SKD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 130 LDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 181
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL ++L  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290
[Close]
BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-12
Identity = 31/97 (31.96%), Postives = 61/97 (62.89%), Query Frame = 1 

		  

Query: 84  YLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIA 143
           YL+P++L ++F+ +F+ A+V+H  T+ V   A++  K LR T+    D  A   +GK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 144 ERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 181
           ER    D+ A+  + +K++R  GK+  ++D+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111
The following BLAST results are available for this feature:
BLAST of Spo11445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731360735|ref|XP_010691979.1|4.7e-8688.5PREDICTED: uncharacterized pro... [more]
gi|902235770|gb|KNA24073.1|2.3e-77100.hypothetical protein SOVF_0182... [more]
gi|297744840|emb|CBI38108.3|4.2e-6374.5unnamed protein product [Vitis... [more]
gi|225454046|ref|XP_002263231.1|4.2e-6374.5PREDICTED: uncharacterized pro... [more]
gi|1000938867|ref|XP_015583493.1|2.0e-6070.8PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BIF9_BETVU3.2e-8688.5Uncharacterized protein OS=Bet... [more]
A0A0K9RX83_SPIOL1.6e-77100.Uncharacterized protein OS=Spi... [more]
F6I1H6_VITVI3.0e-6374.5Putative uncharacterized prote... [more]
A0A068ULF3_COFCA3.1e-6071.9Uncharacterized protein OS=Cof... [more]
U5FXQ5_POPTR4.4e-5968.2Uncharacterized protein OS=Pop... [more]
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BLAST of Spo11445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RL18_AROAE2.1e-633.650S ribosomal protein L18 OS=A... [more]
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BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G20230.12.0e-5863.8Ribosomal L18p/L5e family prot... [more]
AT1G08845.27.8e-2345.7Ribosomal L18p/L5e family prot... [more]
AT3G22450.19.8e-1839.6Ribosomal L18p/L5e family prot... [more]
AT5G27820.11.6e-1231.9Ribosomal L18p/L5e family prot... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 86..182
score: 3.
NoneNo IPR availableGENE3D3.30.420.100coord: 87..182
score: 2.1
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 13..184
score: 3.3E
NoneNo IPR availablePANTHERPTHR12899:SF7SUBFAMILY NOT NAMEDcoord: 13..184
score: 3.3E
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 84..180
score: 8.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009409 response to cold
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0018160 peptidyl-pyrromethane cofactor linkage
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0006007 glucose catabolic process
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0030488 tRNA methylation
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0034051 negative regulation of plant-type hypersensitive response
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0048481 plant ovule development
biological_process GO:0051607 defense response to virus
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006396 RNA processing
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006546 glycine catabolic process
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006412 translation
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0042793 plastid transcription
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009902 chloroplast relocation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0016556 mRNA modification
biological_process GO:0006457 protein folding
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0009642 response to light intensity
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0010468 regulation of gene expression
biological_process GO:0010239 chloroplast mRNA processing
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005739 mitochondrion
cellular_component GO:0048046 apoplast
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009537 proplastid
cellular_component GO:0009513 etioplast
cellular_component GO:0009509 chromoplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009501 amyloplast
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005622 intracellular
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0016020 membrane
cellular_component GO:0009295 nucleoid
cellular_component GO:0009579 thylakoid
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0004418 hydroxymethylbilane synthase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0000906 6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function GO:0009020 tRNA (guanosine-2'-O-)-methyltransferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005515 protein binding
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0004519 endonuclease activity
RNA-Seq Expression