Spo11597 (gene) | SpinachBase

Overview


Name	Spo11597
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S6, chloroplastic
Location	chr6 : 39783521 .. 39788052 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAAGGGAAAAAAATAAAATAAAAATTGAATCCCCCTTATCTATCCAGTATCAGACCATCGCTGAGCTCAGAGAGCAGGAAGCTGAGCCCAAAAACAATGGCGACATTTTCTCTCACTTCAACACTCCCTTCTTCTTCACCCACCACTTCTCTCCACTCCATCCCCAAACCTAAACTCAAACCTTCTACCATTAATTTCACCCACAATCTTAACCCATTTAACCCAAACCTGAAACCCTCTCGCCACCATTACCTGTCCAATTACGGCCCATATGTTAAGGCCATAGCTCTAGACTTCTCGGGCTCGTTCTTCGAGGGTGGTTTCGGGGGTTTGGACGAAGACCCGCCTTCAACGCCACCGGCCGGATTAGCGGTTGAAGAAAAGCCGGAGCCACAATGCCCGCCGGGGCTCCGACAGTATGAAACCATGGCTGTTCTTCGACCCGATATGACTGAGGATGAACGCCTAACTCTTACCCAGAAATACGAAGAGGTAAAGATTTATTTTTATTTAATTTTTCTTTTATTATTGAAGAATGATTATAATTATTTTGTTCAATTGCCCTTTTTTTTAAGCTTTGCTTATAAATTGCCGAGGTTTGCGGGATAATTTGGCGATTTTTGGCTTATATTGCTGGATAATTTTAGGTTTCTATTGCGTAGAGTTTAAAGCTGTTGGTTGATTACTTGATTATCTGGTCAAATAATTAAGAATTAACCAGGGGATTAACATAGCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGTCTGTAGTTCGATCCTGCATGGGGGCATTTTTCTTTTTCGTGGTATAAATGTTTACAGCCATTGAAGGGAGAGAATATAGGCTTGACTTTGCCCCAATTCCATGTTTTGTCTTTCCTTGCATTGTTTGGTTAAAAAAATGAGGGAAAGAACACTGCAAATAATACATGATGAAGCTTAAGTGGAGGGTTTTCGTAAGTTAGAAGTAACTTTTGGTTTCGATTATAGGACTATGGATACATTGGACATAGGTTAAAGGTTTGTCCTTGCCTCATTTGATATCATGGTTTCCCTGGATTGTATTTGGGATTTTTGGTTTAGGTTGCTGAATTATTTTTAGGTTTGTGTTGTGTAAAGTTTAAAGCTGTTGATTGAATATTAGTTAAGATAATTAAAATTTAACCAGGGGATTAACATAGCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGTCTGTAGTTCGATCCTGCATGGGGGCATTTTTTTTTCCCTTTTTTGTGGTATGAATGTTTAGAACCACTAAAGGGAGAGTATCATGTTTTGTTTTTCCTTGCATTGTTTGGTTAAACAAGTGAAGAAAAAAACACTGCAAATAATTCATGATGAGTTGATGACCCTAGAAACTTAGAGATAATTGTGGATTGGATTTGCGAGGGGTGGGGGACGAAGTTAGAAGGAGAACGTTTTGGTATGCAGGGAAAACTGGCGAAGGTTAAGTGGAGGGTTTTCGAAAGTTAGAAGTAACTTTTGATTTTGCTTATGGGACTATGGATAAATTGGACATAAGTTAAAGGTTTGTCCTTGCGTCATTTGATGTCATGGTTACCCTTGATTGTATTTGGGACTTTAGGTACAAGAAGATGAAGGAATGGGCTGCAACACTATCACCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCTCACATGAGCAAATTGATTAATCCAAAGACTTCAGAGTTCAGACCTAGATGAAAACAACTGATAATATCTAGCAAACAACATAACTGAATCAGAATTAGTTGATTTTTTTTTAAATGCATATACCAATTCAGACTTAATGTTGTTGTAAATAAAAACATTGCAGAATTATGCAAAGAAGAGAAACAAAAAGGTTTTGTGTGTGATCTGGTGTGGGGGCACTGGGGGGTATGTGTGCGATTCTGCAGCTATAATAATGATTTTTTTGATTAAATACCCAATTAGGACTTAAGGGTATTGATTGTGAGGCAAAACGCTAATGCTCCAACACTTTTCCTTATTGACATGTTGAAGTGGCTTTTTCTTTGGGGGGATTAGTAGTGGGGGAAATTCTCTACTCTTGACCTTAAGCTTTCCTGTTTCTTAGCCAGCATCCCTTTTTAAGGGACTCAAATGAGGAGGGCGTGGTGAACTGGTGATGAAGTACTACCTTAATCACGGGGTGGACATTTTGGACTTCTGGAGTTTGGGCTCCAGCTTATTGGATTTACCCTAAGCTAGGCTCCACGAGAAAGTATGGGCTAGTTACATTTTGTGGAAGGCTAGATGTTTAAGCTTGGAATTGCACTGGTTTGGTGGGGAACCTTGGCTATGTCATCTCACATTTGGAATCTCACCTTTAAAAACACTTTGTAATAACTACTAATAAGAGCATAACAACTACTAAAGTATTGAGTGGGAGAACCACTGAACTACATCACATGAATGGAAATCTATGAATGAAGAAATTTCTTTATCTACGAATTAAAAATGTGAATTAAAAAACCCCCGACTGTTGGTGCTTTATTTATTGACAGGAAGTAGTCTGAAATTTTGATGTTAAGAGGTTGATCAAAATATTGAATTAGGATTGTAGAGTCACTAGACTGATATGGAATGCTTTTGGGGGGAATATCATTGTGGATTAACTAAATGAAAAACCTAATCACAATCCATTACATTTTAGGAAATGTGACAATACTTTCCGGATATCCTACAGTTCCTTGTGTGACCATTAGTACGAGAACACGGGATGTTATGTAAGACTGTAGTTGTTAACTTGTTATTCAGCTCCTAGATCACTCTTGCAAACTTAAATAGTATCCAGGGACGGAGCTAGTGTGGTGACTGTAGAATGTAAAATTAGAAAATTTCATGACTAAAATGAAGAAAAATCATAGTATCCAGAAAAATCATAGTATGTCATGACTTAAACGTAGATTTTTGGCAATTTTTATAAAAAAAAATCAGAAAATTTCTAGCTTTTATGTACACATTTGACCATTTGCACCCGCTAAAATGAAGAAAAATTTATACATTTTGCACCCACTAATATATTATTCTGGATTCGCCATTGATAGTATCGACATGTTGTGTTCTTGAGCATGGTTGTCCGTTTTACTTTTGCAGTTGCTTGTAGCTGGGGGAGCCATGTATGTGGAAGTCTTCAACAGAGGGGTGATTCCTCTAGCCTACAGCATCAAGAGGAAGAACAAAGCAGGAGAAACCAACAATTACTTAGACGGTATTTATCTCCTCTTCACCTATTTCACTAAACCCGAATCCATTTCTCCTCTAGAGGCCGCACTCGTAACCGACGACGACGTCATAAGGTCATCGAGCTTCAAGATTCGTAAGAGGAAATACTGAAAAGTCAAATTCAAACAGTAGTCTCTAGGTTCCTATCGAAAGTCAACGAGATTATGTACCCTACTTCTCTCCTTATTATCTATACTGTTGCCATAGTTGGTTATCACTGCAGTTTCTGTAGCATATCATTTTTTGAAGTCTTTTAATGCATGTGAGTTGTGGTTGAACCAATGTTTGAACCAGTAGTGTTTTCTTTTCTTTCCCATTACTGATATATACCCTTGAAATGACATAACTTTGCCTTAAATCGAAAATTCCATGTGCAGCTATGACTTTTGTTGTAAGGTATTCATAATTTCATACTGATTATGACAGCCATTATCTTGTTATGGTTTTTAGCTGTGTTTTTGGTACCTCGATTCAACTGAGGTTGGATAAGACAGACAAGTTATGATTACTTATGAAGAACCCTCTGATTGATGAATAGAAGTTCTTCAGATAGGAAAGATCTGATTTTGGCTAATCAACAGACTTGAACCTATCTTGTCTTAATCCACTACAGCTACTCATAGTGGGAAGGTTGTTGCATATGATCTGATCTGATCTTCCCAGACGAATAAGGAACAGTTGTACCAACATTTGTTTCTTAAACTGGAACAAATTTGCTTGCTGTCTCGTTCATTGAACCACTATGCAATGCATGGCCTTATTTGCTGATTGACTTTATTTTTATTATTAGCTCTTTATGATAGACTCTTATTTGGTTCTACACAAGTCACAATTCTCATTATTTGCCAAAGGGGGACAGGTGAGCCACTTCCCAACTCTTATCGAACTTCCAATGAAGTTCCACTTAATTATCCATTTCATCAAATTCATGTTAACCGGAGAACATATCAAATGACATAAATAATCGTTACAAACAACTAGTCAAACAAGACAAGTAAATTAGAAAACTTTTTCTTTG

mRNA sequence

TTAAAGGGAAAAAAATAAAATAAAAATTGAATCCCCCTTATCTATCCAGTATCAGACCATCGCTGAGCTCAGAGAGCAGGAAGCTGAGCCCAAAAACAATGGCGACATTTTCTCTCACTTCAACACTCCCTTCTTCTTCACCCACCACTTCTCTCCACTCCATCCCCAAACCTAAACTCAAACCTTCTACCATTAATTTCACCCACAATCTTAACCCATTTAACCCAAACCTGAAACCCTCTCGCCACCATTACCTGTCCAATTACGGCCCATATGTTAAGGCCATAGCTCTAGACTTCTCGGGCTCGTTCTTCGAGGGTGGTTTCGGGGGTTTGGACGAAGACCCGCCTTCAACGCCACCGGCCGGATTAGCGGTTGAAGAAAAGCCGGAGCCACAATGCCCGCCGGGGCTCCGACAGTATGAAACCATGGCTGTTCTTCGACCCGATATGACTGAGGATGAACGCCTAACTCTTACCCAGAAATACGAAGAGTTGCTTGTAGCTGGGGGAGCCATGTATGTGGAAGTCTTCAACAGAGGGGTGATTCCTCTAGCCTACAGCATCAAGAGGAAGAACAAAGCAGGAGAAACCAACAATTACTTAGACGGTATTTATCTCCTCTTCACCTATTTCACTAAACCCGAATCCATTTCTCCTCTAGAGGCCGCACTCGTAACCGACGACGACGTCATAAGGTCATCGAGCTTCAAGATTCGTAAGAGGAAATACTGAAAAGTCAAATTCAAACAGTAGTCTCTAGGTTCCTATCGAAAGTCAACGAGATTATGTACCCTACTTCTCTCCTTATTATCTATACTGTTGCCATAGTTGGTTATCACTGCAGTTTCTGTAGCATATCATTTTTTGAAGTCTTTTAATGCATGTGAGTTGTGGTTGAACCAATGTTTGAACCAGTAGTGTTTTCTTTTCTTTCCCATTACTGATATATACCCTTGAAATGACATAACTTTGCCTTAAATCGAAAATTCCATGTGCAGCTATGACTTTTGTTGTAAGGTATTCATAATTTCATACTGATTATGACAGCCATTATCTTGTTATGGTTTTTAGCTGTGTTTTTGGTACCTCGATTCAACTGAGGTTGGATAAGACAGACAAGTTATGATTACTTATGAAGAACCCTCTGATTGATGAATAGAAGTTCTTCAGATAGGAAAGATCTGATTTTGGCTAATCAACAGACTTGAACCTATCTTGTCTTAATCCACTACAGCTACTCATAGTGGGAAGGTTGTTGCATATGATCTGATCTGATCTTCCCAGACGAATAAGGAACAGTTGTACCAACATTTGTTTCTTAAACTGGAACAAATTTGCTTGCTGTCTCGTTCATTGAACCACTATGCAATGCATGGCCTTATTTGCTGATTGACTTTATTTTTATTATTAGCTCTTTATGATAGACTCTTATTTGGTTCTACACAAGTCACAATTCTCATTATTTGCCAAAGGGGGACAGGTGAGCCACTTCCCAACTCTTATCGAACTTCCAATGAAGTTCCACTTAATTATCCATTTCATCAAATTCATGTTAACCGGAGAACATATCAAATGACATAAATAATCGTTACAAACAACTAGTCAAACAAGACAAGTAAATTAGAAAACTTTTTCTTTG

Coding sequence (CDS)

ATGGCGACATTTTCTCTCACTTCAACACTCCCTTCTTCTTCACCCACCACTTCTCTCCACTCCATCCCCAAACCTAAACTCAAACCTTCTACCATTAATTTCACCCACAATCTTAACCCATTTAACCCAAACCTGAAACCCTCTCGCCACCATTACCTGTCCAATTACGGCCCATATGTTAAGGCCATAGCTCTAGACTTCTCGGGCTCGTTCTTCGAGGGTGGTTTCGGGGGTTTGGACGAAGACCCGCCTTCAACGCCACCGGCCGGATTAGCGGTTGAAGAAAAGCCGGAGCCACAATGCCCGCCGGGGCTCCGACAGTATGAAACCATGGCTGTTCTTCGACCCGATATGACTGAGGATGAACGCCTAACTCTTACCCAGAAATACGAAGAGTTGCTTGTAGCTGGGGGAGCCATGTATGTGGAAGTCTTCAACAGAGGGGTGATTCCTCTAGCCTACAGCATCAAGAGGAAGAACAAAGCAGGAGAAACCAACAATTACTTAGACGGTATTTATCTCCTCTTCACCTATTTCACTAAACCCGAATCCATTTCTCCTCTAGAGGCCGCACTCGTAACCGACGACGACGTCATAAGGTCATCGAGCTTCAAGATTCGTAAGAGGAAATACTGA

Protein sequence

MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11597.1	Spo11597.1	mRNA

Homology

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BLAST of Spo11597.1 vs. NCBI nr
Match: gi|902196017|gb|KNA13015.1| (hypothetical protein SOVF_120630 [Spinacia oleracea])

HSP 1 Score: 421.8 bits (1083), Expect = 7.100e-115
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

		  
Query: 1   MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV 60
           MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV
Sbjct: 1   MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV 60

Query: 61  KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTE 120
           KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTE
Sbjct: 61  KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTE 120

Query: 121 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 180
           DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT
Sbjct: 121 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 180

Query: 181 KPESISPLEAALVTDDDVIRSSSFKIRKRKY 212
           KPESISPLEAALVTDDDVIRSSSFKIRKRKY
Sbjct: 181 KPESISPLEAALVTDDDVIRSSSFKIRKRKY 211

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BLAST of Spo11597.1 vs. NCBI nr
Match: gi|75276132|sp|P82403.2|RR6_SPIOL (RecName: Full=30S ribosomal protein S6 alpha, chloroplastic; Contains: RecName: Full=30S ribosomal protein S6 beta, chloroplastic; Contains: RecName: Full=30S ribosomal protein S6 gamma, chloroplastic; Contains: RecName: Full=30S ribosomal protein S6 delta, chloroplastic; Contains: RecName: Full=30S ribosomal protein S6 epsilon, chloroplastic; Flags: Precursor)

HSP 1 Score: 341.3 bits (874), Expect = 1.200e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1

		  
Query: 44  NLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPP 103
           NLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPP
Sbjct: 1   NLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPP 60

Query: 104 GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAG 163
           GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAG
Sbjct: 61  GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAG 120

Query: 164 ETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY 212
           ETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY
Sbjct: 121 ETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY 168

[Close]

BLAST of Spo11597.1 vs. NCBI nr
Match: gi|731367394|ref|XP_010695587.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 327.8 bits (839), Expect = 1.400e-86
Identity = 174/212 (82.08%), Postives = 186/212 (87.74%), Query Frame = 1

		  
Query: 1   MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV 60
           MATFSLTSTLPSSSPT SLHSI K   KP++  F  +   F P  KP+  H+  NYGP++
Sbjct: 1   MATFSLTSTLPSSSPT-SLHSIHK--FKPTSTQFLPSTITFKP--KPNLSHHQPNYGPHI 60

Query: 61  KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAV-EEKPEPQCPPGLRQYETMAVLRPDMT 120
           KA+ALDFSGSFFEGGF GLDEDPPSTPP+GLAV +EKPEPQCPPGLRQYETMAVLRPDMT
Sbjct: 61  KALALDFSGSFFEGGFAGLDEDPPSTPPSGLAVADEKPEPQCPPGLRQYETMAVLRPDMT 120

Query: 121 EDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYF 180
           EDERLTLTQKYEELL+AGGAMYVEVFNRGVIPLAYSIK+KNKAGETN YLDGIYLLFTYF
Sbjct: 121 EDERLTLTQKYEELLIAGGAMYVEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYF 180

Query: 181 TKPESISPLEAALVTDDDVIRSSSFKIRKRKY 212
           TKPESIS LE  L TDDDVIRSSSFKIRKRKY
Sbjct: 181 TKPESISNLETILQTDDDVIRSSSFKIRKRKY 207

[Close]

BLAST of Spo11597.1 vs. NCBI nr
Match: gi|685355788|ref|XP_009112871.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like [Brassica rapa])

HSP 1 Score: 266.5 bits (680), Expect = 3.800e-68
Identity = 139/195 (71.28%), Postives = 160/195 (82.05%), Query Frame = 1

		  
Query: 20  HSIPKPKLKPSTINFTHNLNPFNPNLKP--SRHHYLSNYGPYV-KAIALDFSGSFFEGGF 79
           HS+P    +P  ++F+ +L PF  N KP  S+     N GP V K+ ALDFSG+FFEGGF
Sbjct: 16  HSLPNVSSQP-LLSFSRSLRPFVSNSKPLASQKKKRDNSGPLVVKSQALDFSGTFFEGGF 75

Query: 80  GGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVA 139
           G   +D P++P    A+E+KPEPQCPPGLRQYETMAVLRPDM+EDERL LTQKYEELLVA
Sbjct: 76  G--SDDDPTSPSVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVA 135

Query: 140 GGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDD 199
           GG MYVEVFNRGVIPLAYSI++KNKAGETN YLDGIYLLFTYFTKPESI+PLE+ L+ DD
Sbjct: 136 GGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESITPLESVLIADD 195

Query: 200 DVIRSSSFKIRKRKY 212
           DVIRSSSFKI+KRKY
Sbjct: 196 DVIRSSSFKIKKRKY 207

[Close]

BLAST of Spo11597.1 vs. NCBI nr
Match: gi|823214109|ref|XP_012439803.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Gossypium raimondii])

HSP 1 Score: 264.2 bits (674), Expect = 1.900e-67
Identity = 146/208 (70.19%), Postives = 165/208 (79.33%), Query Frame = 1

		  
Query: 13  SSPTTSLHSIPK-PKLKPS-----TINFTHNLNPFNPNLKPSRHHYLSNYGPY--VKAIA 72
           +SPT++L + P  P L P       ++FTH+L P  P LK        N+     VKA  
Sbjct: 2   ASPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPIPPKLKSMISLKRDNHPSTLTVKAQT 61

Query: 73  LDFSGSFFEGGFGGLDEDPPSTPPAGL-AVEEKPEPQCPPGLRQYETMAVLRPDMTEDER 132
           LDFSGSFFEGGFG  D+DPPS P +G+ A+E+K EPQCPPGLRQYETMAVLRPDM+EDER
Sbjct: 62  LDFSGSFFEGGFGS-DDDPPSQPGSGITALEDKEEPQCPPGLRQYETMAVLRPDMSEDER 121

Query: 133 LTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPE 192
           L LTQKYEELLVAGG MY+EVFNRGVIPLAYSIK+KNKAGETN YLDGIYLLFTYFTKPE
Sbjct: 122 LALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTKPE 181

Query: 193 SISPLEAALVTDDDVIRSSSFKIRKRKY 212
           S++ LEAAL TDDDVIRS+SFKIRKRKY
Sbjct: 182 SMTALEAALNTDDDVIRSTSFKIRKRKY 208

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BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0H2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_120630 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 5.000e-115
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

		  
Query: 1   MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV 60
           MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV
Sbjct: 1   MATFSLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLSNYGPYV 60

Query: 61  KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTE 120
           KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTE
Sbjct: 61  KAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTE 120

Query: 121 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 180
           DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT
Sbjct: 121 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 180

Query: 181 KPESISPLEAALVTDDDVIRSSSFKIRKRKY 212
           KPESISPLEAALVTDDDVIRSSSFKIRKRKY
Sbjct: 181 KPESISPLEAALVTDDDVIRSSSFKIRKRKY 211

[Close]

BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
Match: M4EFZ1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.700e-68
Identity = 139/195 (71.28%), Postives = 160/195 (82.05%), Query Frame = 1

		  
Query: 20  HSIPKPKLKPSTINFTHNLNPFNPNLKP--SRHHYLSNYGPYV-KAIALDFSGSFFEGGF 79
           HS+P    +P  ++F+ +L PF  N KP  S+     N GP V K+ ALDFSG+FFEGGF
Sbjct: 16  HSLPNVSSQP-LLSFSRSLRPFVSNSKPLASQKKKRDNSGPLVVKSQALDFSGTFFEGGF 75

Query: 80  GGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVA 139
           G   +D P++P    A+E+KPEPQCPPGLRQYETMAVLRPDM+EDERL LTQKYEELLVA
Sbjct: 76  G--SDDDPTSPSVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVA 135

Query: 140 GGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDD 199
           GG MYVEVFNRGVIPLAYSI++KNKAGETN YLDGIYLLFTYFTKPESI+PLE+ L+ DD
Sbjct: 136 GGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESITPLESVLIADD 195

Query: 200 DVIRSSSFKIRKRKY 212
           DVIRSSSFKI+KRKY
Sbjct: 196 DVIRSSSFKIKKRKY 207

[Close]

BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
Match: V4KGD5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10023690mg PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.300e-67
Identity = 143/205 (69.76%), Postives = 165/205 (80.49%), Query Frame = 1

		  
Query: 12  SSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPS---RHHYLSNYGPYVKAIALDFS 71
           S+SP  + HS+P    +P  ++F+H+L PF    KP    +     N G  VK+ ALDFS
Sbjct: 7   SNSPICT-HSLPNISSQP-LLSFSHSLRPFISKSKPIASLQQQKRDNSGFVVKSQALDFS 66

Query: 72  GSFFEGGFGGLDEDPPSTPPAGL--AVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTL 131
           G+FFEGGFG  D+DP ST  +G+  A+E+KPEPQCPPGLRQYETMAVLRPDM+EDERL L
Sbjct: 67  GTFFEGGFGS-DDDPTSTSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGL 126

Query: 132 TQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESIS 191
           TQKYEELLVAGG MYVEVFNRGVIPLAYSI++KNKAGETN YLDGIYLLFTYFTKPESI+
Sbjct: 127 TQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIT 186

Query: 192 PLEAALVTDDDVIRSSSFKIRKRKY 212
           PLEA L  DDD+IRSSSFKI+KRKY
Sbjct: 187 PLEAVLTADDDIIRSSSFKIKKRKY 208

[Close]

BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
Match: M4FII7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.300e-67
Identity = 138/195 (70.77%), Postives = 159/195 (81.54%), Query Frame = 1

		  
Query: 20  HSIPKPKLKPSTINFTHNLNPFNPNLKP--SRHHYLSNYGPYV-KAIALDFSGSFFEGGF 79
           HS+P    +P  ++F+ +L PF    KP  S+     N GP V K+ ALDFSG+FFEGGF
Sbjct: 16  HSLPNVSSQP-LLSFSRSLRPFLSKSKPLASQKKKRDNSGPLVVKSQALDFSGTFFEGGF 75

Query: 80  GGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVA 139
           G   +D P++P    A+E+KPEPQCPPGLRQYETMAVLRPDM+EDERL LTQKYEELLVA
Sbjct: 76  G--SDDDPTSPSVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVA 135

Query: 140 GGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDD 199
           GG MYVEVFNRGVIPLAYSI++KNKAGETN YLDGIYLLFTYFTKPESI+PLE+ L+ DD
Sbjct: 136 GGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESITPLESVLIADD 195

Query: 200 DVIRSSSFKIRKRKY 212
           DVIRSSSFKI+KRKY
Sbjct: 196 DVIRSSSFKIKKRKY 207

[Close]

BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
Match: A0A0D2Q1S9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G256400 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.300e-67
Identity = 146/208 (70.19%), Postives = 165/208 (79.33%), Query Frame = 1

		  
Query: 13  SSPTTSLHSIPK-PKLKPS-----TINFTHNLNPFNPNLKPSRHHYLSNYGPY--VKAIA 72
           +SPT++L + P  P L P       ++FTH+L P  P LK        N+     VKA  
Sbjct: 2   ASPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPIPPKLKSMISLKRDNHPSTLTVKAQT 61

Query: 73  LDFSGSFFEGGFGGLDEDPPSTPPAGL-AVEEKPEPQCPPGLRQYETMAVLRPDMTEDER 132
           LDFSGSFFEGGFG  D+DPPS P +G+ A+E+K EPQCPPGLRQYETMAVLRPDM+EDER
Sbjct: 62  LDFSGSFFEGGFGS-DDDPPSQPGSGITALEDKEEPQCPPGLRQYETMAVLRPDMSEDER 121

Query: 133 LTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPE 192
           L LTQKYEELLVAGG MY+EVFNRGVIPLAYSIK+KNKAGETN YLDGIYLLFTYFTKPE
Sbjct: 122 LALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTKPE 181

Query: 193 SISPLEAALVTDDDVIRSSSFKIRKRKY 212
           S++ LEAAL TDDDVIRS+SFKIRKRKY
Sbjct: 182 SMTALEAALNTDDDVIRSTSFKIRKRKY 208

[Close]

BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
Match: RR6_SPIOL (30S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPS6 PE=1 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 7.700e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1

		  
Query: 44  NLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPP 103
           NLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPP
Sbjct: 1   NLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPP 60

Query: 104 GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAG 163
           GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAG
Sbjct: 61  GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAG 120

Query: 164 ETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY 212
           ETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY
Sbjct: 121 ETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY 168

[Close]

BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
Match: RR6_ARATH (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.600e-66
Identity = 133/184 (72.28%), Postives = 149/184 (80.98%), Query Frame = 1

		  
Query: 32  INFTHNLNPFNPNLKPSRHHYLSNYGPY--VKAIALDFSGSFFEGGFGGLDEDPPSTPPA 91
           ++F+H+L PF    KP         G    VK+ ALDFSG+FFEGGFG  D+DP S   +
Sbjct: 24  LSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGS-DDDPTSPSGS 83

Query: 92  GL--AVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNR 151
           G+  A+E+KPEPQCPPGLRQYETMAVLRPDM+EDERL LTQKYEELLVAGG MYVEVFNR
Sbjct: 84  GVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNR 143

Query: 152 GVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIR 211
           GVIPLAYSI++KNKAGETN YLDGIYLLFTYFTKPESI PLE  L  DDD+IRSSSFKI+
Sbjct: 144 GVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIK 203

[Close]

BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
Match: RS6_ANAVT (30S ribosomal protein S6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsF PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.400e-9
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 1

		  
Query: 108 YETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNN 167
           YET+ +LRPD+T+++      KY+ LL   GA  +EV NRG   LAY IK++        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDIEVQNRGKRRLAYEIKKQR------- 64

Query: 168 YLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 206
             DG Y+ F Y    ++I+ LE A+   ++VIR  + K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

[Close]

BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
Match: RS6_TRIEI (30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsF PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-9
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1

		  
Query: 108 YETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNN 167
           YETM +LRPDMTE++      KY+ +L   GA  +++ +RG + LAY         E NN
Sbjct: 6   YETMYILRPDMTEEKVEQAITKYKSMLEEQGAYDIKIQHRGKLRLAY---------EINN 65

Query: 168 YLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 206
             +GIY+   Y   P  I+ LE A+   ++VIR  + K
Sbjct: 66  QREGIYIQMNYQGPPTQIAILERAMRLSEEVIRYLTVK 94

[Close]

BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
Match: RS6_NOSS1 (30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsF PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.000e-9
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 1

		  
Query: 108 YETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNN 167
           YET+ +LRPD+T+++      KY+ LL   GA  +EV NRG   LAY IK++        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDLEVQNRGKRRLAYEIKKQR------- 64

Query: 168 YLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 206
             DG Y+ F Y    ++I+ LE A+   ++VIR  + K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

[Close]

BLAST of Spo11597.1 vs. TAIR (Arabidopsis)
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 253.8 bits (647), Expect = 9.100e-68
Identity = 133/184 (72.28%), Postives = 149/184 (80.98%), Query Frame = 1

		  
Query: 32  INFTHNLNPFNPNLKPSRHHYLSNYGPY--VKAIALDFSGSFFEGGFGGLDEDPPSTPPA 91
           ++F+H+L PF    KP         G    VK+ ALDFSG+FFEGGFG  D+DP S   +
Sbjct: 24  LSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGS-DDDPTSPSGS 83

Query: 92  GL--AVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNR 151
           G+  A+E+KPEPQCPPGLRQYETMAVLRPDM+EDERL LTQKYEELLVAGG MYVEVFNR
Sbjct: 84  GVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNR 143

Query: 152 GVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIR 211
           GVIPLAYSI++KNKAGETN YLDGIYLLFTYFTKPESI PLE  L  DDD+IRSSSFKI+
Sbjct: 144 GVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIK 203

The following BLAST results are available for this feature:

BLAST of Spo11597.1 vs. NCBI nr
BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
BLAST of Spo11597.1 vs. TAIR (Arabidopsis)

BLAST of Spo11597.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902196017\|gb\|KNA13015.1\|	7.1e-115	100.	hypothetical protein SOVF_1206...	[more]
gi\|75276132\|sp\|P82403.2\|RR6_SPIOL	1.2e-90	100.	RecName: Full=30S ribosomal pr...	[more]
gi\|731367394\|ref\|XP_010695587.1\|	1.4e-86	82.0	PREDICTED: 30S ribosomal prote...	[more]
gi\|685355788\|ref\|XP_009112871.1\|	3.8e-68	71.2	PREDICTED: 30S ribosomal prote...	[more]
gi\|823214109\|ref\|XP_012439803.1\|	1.9e-67	70.1	PREDICTED: 30S ribosomal prote...	[more]

BLAST of Spo11597.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9R0H2_SPIOL	5.0e-115	100.	Uncharacterized protein OS=Spi...	[more]
M4EFZ1_BRARP	2.7e-68	71.2	Uncharacterized protein OS=Bra...	[more]
V4KGD5_EUTSA	1.3e-67	69.7	Uncharacterized protein OS=Eut...	[more]
M4FII7_BRARP	1.3e-67	70.7	Uncharacterized protein OS=Bra...	[more]
A0A0D2Q1S9_GOSRA	1.3e-67	70.1	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo11597.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
RR6_SPIOL	7.7e-93	100.	30S ribosomal protein S6 alpha...	[more]
RR6_ARATH	1.6e-66	72.2	30S ribosomal protein S6 alpha...	[more]
RS6_ANAVT	2.4e-9	37.7	30S ribosomal protein S6 OS=An...	[more]
RS6_TRIEI	3.1e-9	37.7	30S ribosomal protein S6 OS=Tr...	[more]
RS6_NOSS1	4.0e-9	37.7	30S ribosomal protein S6 OS=No...	[more]

BLAST of Spo11597.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT1G64510.1	9.1e-68	72.2	Translation elongation factor...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 107..205 score: 7.9
IPR000529	Ribosomal protein S6	unknown	SSF54995	Ribosomal protein S6	coord: 105..209 score: 4.06
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 106..209 score: 2.1
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 105..208 score: 12
None	No IPR available	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 54..211 score: 7.9
None	No IPR available	PANTHER	PTHR21011:SF1	28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL	coord: 54..211 score: 7.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0006479	protein methylation
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009553	embryo sac development
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006433	prolyl-tRNA aminoacylation
biological_process	GO:0010109	regulation of photosynthesis
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006418	tRNA aminoacylation for protein translation
biological_process	GO:0006412	translation
biological_process	GO:0000918	division septum site selection
biological_process	GO:0010020	chloroplast fission
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0000049	tRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0008276	protein methyltransferase activity
molecular_function	GO:0046406	magnesium protoporphyrin IX methyltransferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030899	calcium-dependent ATPase activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0004827	proline-tRNA ligase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18209	0.76	Barchart \| Table
Spo09458	0.73	Barchart \| Table
Spo26836	0.72	Barchart \| Table
Spo04445	0.72	Barchart \| Table
Spo15925	0.72	Barchart \| Table
Spo07418	0.71	Barchart \| Table
Spo02922	0.70	Barchart \| Table
Spo25805	0.70	Barchart \| Table
Spo05699	0.69	Barchart \| Table
Spo09210	0.67	Barchart \| Table
Spo18908	0.67	Barchart \| Table
Spo21757	0.67	Barchart \| Table
Spo26006	0.67	Barchart \| Table
Spo25655	0.66	Barchart \| Table
Spo22530	0.66	Barchart \| Table
Spo21020	0.65	Barchart \| Table
Spo18169	0.65	Barchart \| Table