Spo11629 (gene) | SpinachBase

Overview


Name	Spo11629
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ATP synthase, F0 subunit B
Location	chr1 : 22567470 .. 22568138 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACATGCTCGTGGCTTCCTCCTCCAAAACCCTCCCCACCACAACAACCACCACCATCACCCCAAAACCCAAATTCCCTCTCCTCAAAACCCCACTCCTTAAACTCTCACCACCGCAGCTCCCACCTCTTAAACACCTCAACCTCTCCGTCCTCAAATCCGCCGCCATTACCGCTACCCCTCTCACCCTCTCCTTCCTCCTCCCCTACCCATCCCTAGCCGAAGAAATCGAGAAAGCGTCCCTTTTCGACTTCAACCTGACTCTCCCCATAATCATGGCGGAATTCCTGTTCCTTATGTTCGCCCTTGACAAGATATACTACACCCCACTGGGCGACTTCATGGATAAGCGTGACGCCTCCATTAAAGAACAGCTCTCCGGTGTGAAGGATACTTCCTCGGAGGTTAAGCAACTTGAAGAACAGGCTAACGCCGTGATGCGCGCTGCCCGTGCGGAGATCTCAGCTGCTTTGAACAAGATGAAGAAGGAGACTCAGCTTGAGGTTGAAGCTAAATTGGCGGAAGGAAGGAAGAAGATTGAAGTAGAACTTCAAGAAGCTTTGGGGAGTTTGGAACAACAAAAGGAAGATACTATTAAGTCTCTTGATTCTCAGATTTCTGCTCTTAGTGATGACATTGTTAAGAAGGTTCTTCCTGTTTCTTAA

mRNA sequence

ATGGCCAACATGCTCGTGGCTTCCTCCTCCAAAACCCTCCCCACCACAACAACCACCACCATCACCCCAAAACCCAAATTCCCTCTCCTCAAAACCCCACTCCTTAAACTCTCACCACCGCAGCTCCCACCTCTTAAACACCTCAACCTCTCCGTCCTCAAATCCGCCGCCATTACCGCTACCCCTCTCACCCTCTCCTTCCTCCTCCCCTACCCATCCCTAGCCGAAGAAATCGAGAAAGCGTCCCTTTTCGACTTCAACCTGACTCTCCCCATAATCATGGCGGAATTCCTGTTCCTTATGTTCGCCCTTGACAAGATATACTACACCCCACTGGGCGACTTCATGGATAAGCGTGACGCCTCCATTAAAGAACAGCTCTCCGGTGTGAAGGATACTTCCTCGGAGGTTAAGCAACTTGAAGAACAGGCTAACGCCGTGATGCGCGCTGCCCGTGCGGAGATCTCAGCTGCTTTGAACAAGATGAAGAAGGAGACTCAGCTTGAGGTTGAAGCTAAATTGGCGGAAGGAAGGAAGAAGATTGAAGTAGAACTTCAAGAAGCTTTGGGGAGTTTGGAACAACAAAAGGAAGATACTATTAAGTCTCTTGATTCTCAGATTTCTGCTCTTAGTGATGACATTGTTAAGAAGGTTCTTCCTGTTTCTTAA

Coding sequence (CDS)

ATGGCCAACATGCTCGTGGCTTCCTCCTCCAAAACCCTCCCCACCACAACAACCACCACCATCACCCCAAAACCCAAATTCCCTCTCCTCAAAACCCCACTCCTTAAACTCTCACCACCGCAGCTCCCACCTCTTAAACACCTCAACCTCTCCGTCCTCAAATCCGCCGCCATTACCGCTACCCCTCTCACCCTCTCCTTCCTCCTCCCCTACCCATCCCTAGCCGAAGAAATCGAGAAAGCGTCCCTTTTCGACTTCAACCTGACTCTCCCCATAATCATGGCGGAATTCCTGTTCCTTATGTTCGCCCTTGACAAGATATACTACACCCCACTGGGCGACTTCATGGATAAGCGTGACGCCTCCATTAAAGAACAGCTCTCCGGTGTGAAGGATACTTCCTCGGAGGTTAAGCAACTTGAAGAACAGGCTAACGCCGTGATGCGCGCTGCCCGTGCGGAGATCTCAGCTGCTTTGAACAAGATGAAGAAGGAGACTCAGCTTGAGGTTGAAGCTAAATTGGCGGAAGGAAGGAAGAAGATTGAAGTAGAACTTCAAGAAGCTTTGGGGAGTTTGGAACAACAAAAGGAAGATACTATTAAGTCTCTTGATTCTCAGATTTCTGCTCTTAGTGATGACATTGTTAAGAAGGTTCTTCCTGTTTCTTAA

Protein sequence

MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11629.1	Spo11629.1	mRNA

Homology

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BLAST of Spo11629.1 vs. NCBI nr
Match: gi|461595|sp|P31853.2|ATPX_SPIOL (RecName: Full=ATP synthase subunit b', chloroplastic; AltName: Full=ATP synthase F(0) sector subunit b'; AltName: Full=ATPase subunit II; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 392.5 bits (1007), Expect = 4.900e-106
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60
           MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA
Sbjct: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60

Query: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120
           TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD
Sbjct: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120

Query: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180
           ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK
Sbjct: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180

Query: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS
Sbjct: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. NCBI nr
Match: gi|448445|prf||1917214A (CF0 ATP synthase:SUBUNIT=9)

HSP 1 Score: 376.3 bits (965), Expect = 3.600e-101
Identity = 215/222 (96.85%), Postives = 216/222 (97.30%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60
           MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA
Sbjct: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60

Query: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120
           TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD
Sbjct: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120

Query: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180
           ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALN   K  + EVEAKLAEGRKK
Sbjct: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNTQLKMKKEEVEAKLAEGRKK 180

Query: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS
Sbjct: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. NCBI nr
Match: gi|731377526|ref|XP_010667898.1| (PREDICTED: uncharacterized protein LOC104884892 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 294.3 bits (752), Expect = 1.800e-76
Identity = 177/234 (75.64%), Postives = 197/234 (84.19%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTL------------PTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHL 60
           MANML+ASSSK++            PTTTTTT TPKPK  L KTPL           K L
Sbjct: 327 MANMLMASSSKSVFAMASSSKSLQSPTTTTTT-TPKPKLSLPKTPL-----------KSL 386

Query: 61  NLSVLKSAAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIY 120
           N S+LKSAAI+ TPL+LS+LLP+PS AEEIEKASLFDFNLTLPIIMAEFL LMFALDKIY
Sbjct: 387 NFSLLKSAAISITPLSLSYLLPHPSFAEEIEKASLFDFNLTLPIIMAEFLILMFALDKIY 446

Query: 121 YTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQL 180
           +TPLGDFMDKRD+ IKE+LS VKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQ+
Sbjct: 447 FTPLGDFMDKRDSDIKEKLSDVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQV 506

Query: 181 EVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           EVEAKL EGRKK+E ELQEAL +LE+QK++TIKSLDSQI++LS+DIVKKVLPVS
Sbjct: 507 EVEAKLLEGRKKVEAELQEALANLEKQKDETIKSLDSQIASLSEDIVKKVLPVS 548

[Close]

BLAST of Spo11629.1 vs. NCBI nr
Match: gi|870841169|gb|KMS95052.1| (hypothetical protein BVRB_012930 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 294.3 bits (752), Expect = 1.800e-76
Identity = 177/234 (75.64%), Postives = 197/234 (84.19%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTL------------PTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHL 60
           MANML+ASSSK++            PTTTTTT TPKPK  L KTPL           K L
Sbjct: 1   MANMLMASSSKSVFAMASSSKSLQSPTTTTTT-TPKPKLSLPKTPL-----------KSL 60

Query: 61  NLSVLKSAAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIY 120
           N S+LKSAAI+ TPL+LS+LLP+PS AEEIEKASLFDFNLTLPIIMAEFL LMFALDKIY
Sbjct: 61  NFSLLKSAAISITPLSLSYLLPHPSFAEEIEKASLFDFNLTLPIIMAEFLILMFALDKIY 120

Query: 121 YTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQL 180
           +TPLGDFMDKRD+ IKE+LS VKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQ+
Sbjct: 121 FTPLGDFMDKRDSDIKEKLSDVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQV 180

Query: 181 EVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           EVEAKL EGRKK+E ELQEAL +LE+QK++TIKSLDSQI++LS+DIVKKVLPVS
Sbjct: 181 EVEAKLLEGRKKVEAELQEALANLEKQKDETIKSLDSQIASLSEDIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. NCBI nr
Match: gi|970034407|ref|XP_015078527.1| (PREDICTED: uncharacterized protein LOC107022430 [Solanum pennellii])

HSP 1 Score: 248.1 bits (632), Expect = 1.500e-62
Identity = 157/226 (69.47%), Postives = 187/226 (82.74%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKT--PLLKLSPPQLPP-LKHLNL-SVLKSA 60
           MANM++ SSSK L T++++TI P P+F L  T  P  KL  P+ P  L+ L++ S LKS 
Sbjct: 275 MANMMM-SSSKVLITSSSSTIPPSPRFKLSLTQIPFPKLPLPKSPKSLEALSIPSTLKSI 334

Query: 61  AITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFM 120
           ++    L  S  +  PSLAEEIEKASLFDFNLTLPI+MAEFLFLMFALDKIY++PLG FM
Sbjct: 335 SVI---LASSLAMAPPSLAEEIEKASLFDFNLTLPIMMAEFLFLMFALDKIYFSPLGKFM 394

Query: 121 DKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAE 180
           D+RD++IKE+LS VKDTS+EVKQLE+QA A+M+AARAEISAALNKMKKETQ EVE K+AE
Sbjct: 395 DERDSAIKEKLSSVKDTSAEVKQLEDQAAAIMKAARAEISAALNKMKKETQQEVEQKIAE 454

Query: 181 GRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           GRKK+E ELQEAL SLE QKE+TIKSLDSQI+ALSD+IVKKVLPVS
Sbjct: 455 GRKKVEAELQEALASLESQKEETIKSLDSQIAALSDEIVKKVLPVS 496

[Close]

BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_151500 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.400e-106
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60
           MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA
Sbjct: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60

Query: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120
           TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD
Sbjct: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120

Query: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180
           ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK
Sbjct: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180

Query: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS
Sbjct: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5H5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012930 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.300e-76
Identity = 177/234 (75.64%), Postives = 197/234 (84.19%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTL------------PTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHL 60
           MANML+ASSSK++            PTTTTTT TPKPK  L KTPL           K L
Sbjct: 1   MANMLMASSSKSVFAMASSSKSLQSPTTTTTT-TPKPKLSLPKTPL-----------KSL 60

Query: 61  NLSVLKSAAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIY 120
           N S+LKSAAI+ TPL+LS+LLP+PS AEEIEKASLFDFNLTLPIIMAEFL LMFALDKIY
Sbjct: 61  NFSLLKSAAISITPLSLSYLLPHPSFAEEIEKASLFDFNLTLPIIMAEFLILMFALDKIY 120

Query: 121 YTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQL 180
           +TPLGDFMDKRD+ IKE+LS VKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQ+
Sbjct: 121 FTPLGDFMDKRDSDIKEKLSDVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQV 180

Query: 181 EVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           EVEAKL EGRKK+E ELQEAL +LE+QK++TIKSLDSQI++LS+DIVKKVLPVS
Sbjct: 181 EVEAKLLEGRKKVEAELQEALANLEKQKDETIKSLDSQIASLSEDIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
Match: M1BTY8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020484 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.000e-62
Identity = 157/226 (69.47%), Postives = 187/226 (82.74%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKT--PLLKLSPPQLPP-LKHLNL-SVLKSA 60
           MANM++ SSSK L T++++TI P P+F L  T  P  KL  P+ P  L+ L++ S LKS 
Sbjct: 1   MANMMM-SSSKVLITSSSSTIPPSPRFKLSLTQIPFPKLPLPKSPKSLETLSIPSTLKSI 60

Query: 61  AITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFM 120
           ++    L  S  +  PSLAEEIEKASLFDFNLTLPI+MAEFLFLMFALDKIY++PLG FM
Sbjct: 61  SVI---LASSLAMAPPSLAEEIEKASLFDFNLTLPIMMAEFLFLMFALDKIYFSPLGKFM 120

Query: 121 DKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAE 180
           D+RD++IKE+LS VKDTS+EVKQLE+QA A+M+AARAEISAALNKMKKETQ EVE K+AE
Sbjct: 121 DERDSAIKEKLSSVKDTSAEVKQLEDQAAAIMKAARAEISAALNKMKKETQQEVEQKIAE 180

Query: 181 GRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           GRKK+E ELQEAL SLE QKE+TIKSLDSQI+ALSD+IVKKVLPVS
Sbjct: 181 GRKKVEAELQEALASLESQKEETIKSLDSQIAALSDEIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
Match: K4C7M8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.000e-62
Identity = 157/226 (69.47%), Postives = 187/226 (82.74%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKT--PLLKLSPPQLPP-LKHLNL-SVLKSA 60
           MANM++ SSSK L T++++TI P P+F L  T  P  KL  P+ P  L+ L++ S LKS 
Sbjct: 1   MANMMM-SSSKVLITSSSSTIPPSPRFKLSLTQIPFPKLPLPKSPKSLETLSIPSTLKSI 60

Query: 61  AITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFM 120
           ++    L  S  +  PSLAEEIEKASLFDFNLTLPI+MAEFLFLMFALDKIY++PLG FM
Sbjct: 61  SVI---LASSLAMAPPSLAEEIEKASLFDFNLTLPIMMAEFLFLMFALDKIYFSPLGKFM 120

Query: 121 DKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAE 180
           D+RD++IKE+LS VKDTS+EVKQLE+QA A+M+AARAEISAALNKMKKETQ EVE K+AE
Sbjct: 121 DERDSAIKEKLSSVKDTSAEVKQLEDQAAAIMKAARAEISAALNKMKKETQQEVEQKIAE 180

Query: 181 GRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           GRKK+E ELQEAL SLE QKE+TIKSLDSQI+ALSD+IVKKVLPVS
Sbjct: 181 GRKKVEAELQEALASLESQKEETIKSLDSQIAALSDEIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
Match: M1BTW9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020466 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.000e-62
Identity = 156/226 (69.03%), Postives = 186/226 (82.30%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKT--PLLKLSPPQLPP-LKHLNL-SVLKSA 60
           MANM++ SSSK L T++++TI P P+F L  T  P  KL  P+ P  L+ L++ S LKS 
Sbjct: 1   MANMMM-SSSKALITSSSSTIPPSPRFKLSLTQIPFPKLPLPKSPKTLETLSIPSTLKSI 60

Query: 61  AITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFM 120
           ++    L  S  +  PSLAEEIEKASLFDFNLTLPI+MAEFLFLMFALDKIY++PLG FM
Sbjct: 61  SVI---LASSLAMAPPSLAEEIEKASLFDFNLTLPIMMAEFLFLMFALDKIYFSPLGKFM 120

Query: 121 DKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAE 180
           D+RD+SIKE+LS VKDTS+EVKQLE+QA A+M+AARAEISAALNKMKKETQ EVE K+AE
Sbjct: 121 DERDSSIKEKLSSVKDTSAEVKQLEDQAAAIMKAARAEISAALNKMKKETQQEVEQKIAE 180

Query: 181 GRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           GRKK+E ELQEAL SLE QKE+TIKSLDSQI+ALSD+IVKKVLP +
Sbjct: 181 GRKKVEAELQEALASLESQKEETIKSLDSQIAALSDEIVKKVLPAT 222

[Close]

BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
Match: ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2)

HSP 1 Score: 392.5 bits (1007), Expect = 3.100e-108
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60
           MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA
Sbjct: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60

Query: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120
           TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD
Sbjct: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120

Query: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180
           ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK
Sbjct: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180

Query: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 223
           IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS
Sbjct: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS 222

[Close]

BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
Match: ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.400e-22
Identity = 62/171 (36.26%), Postives = 108/171 (63.16%), Query Frame = 1

		  
Query: 50  LSVLKSAAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYY 109
           L+ L   A++A  +  + L+  P+ AE      +FDFNLTLP++  EFL LM  L+K ++
Sbjct: 39  LAQLAKPALSA--IVANALMAMPAAAEA---GKIFDFNLTLPVMAGEFLLLMVFLEKTWF 98

Query: 110 TPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLE 169
           TP+G  +D+RD  I+ +L  VKD + +V +L  +A  ++++AR+++SA +N  K   Q E
Sbjct: 99  TPVGKVLDERDNLIRSKLGSVKDNTGDVDKLVLEAETILKSARSDVSAMINTKKAAKQSE 158

Query: 170 VEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLP 221
           ++    E + KI  E++ ++  LEQ+    +KSLD+Q+  +S +++K+VLP
Sbjct: 159 LDKTYNEAKAKITAEVESSIAGLEQESASMLKSLDAQVDKISAEVLKRVLP 204

[Close]

BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
Match: ATPX_TRIEI (ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.700e-14
Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 1

		  
Query: 73  SLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKD 132
           ++ E  EK  LFD N TLP++  +FL L F LDKI+Y PLG  +D R   I+E     K+
Sbjct: 9   AVEEVAEKGGLFDINATLPLMAIQFLLLAFVLDKIFYKPLGKAIDSRADYIRENQVKAKE 68

Query: 133 TSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSL 192
             ++ KQL EQ        R +    +   + E +     K+A  +K+ +V+ ++A   +
Sbjct: 69  RLAKAKQLAEQYEQEFAQTRQKSQVVIVAAQAEAEKIAATKVAVAQKEAQVKREQAAQEI 128

Query: 193 EQQKEDTIKSLDSQISALSDDIVKKVL 220
           E+QKE  ++ L+ Q+ +LS  I++K+L
Sbjct: 129 EKQKEVALEQLEEQVDSLSRQILEKLL 155

[Close]

BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
Match: ATPX_SYNP1 (ATP synthase subunit b' OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.500e-14
Identity = 46/149 (30.87%), Postives = 84/149 (56.38%), Query Frame = 1

		  
Query: 71  YPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGV 130
           +P L   I +  +FDF+ TLP++  +FL L   L+ + Y PLG  +D RD  I+  L   
Sbjct: 10  FPLLFRPILERLMFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQA 69

Query: 131 KDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALG 190
           K+   +  +L  Q    +   R E  A + + + E Q    A++A  ++ ++ EL +A  
Sbjct: 70  KERLQQATELANQYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQA 129

Query: 191 SLEQQKEDTIKSLDSQISALSDDIVKKVL 220
            ++QQK+ T+++L+ Q+S+LS+ ++ K+L
Sbjct: 130 EIDQQKQATLQALEGQVSSLSEQLLAKLL 158

[Close]

BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
Match: ATPX_CYAPA (ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.700e-13
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 1

		  
Query: 74  LAEEIEKAS----LFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSG 133
           LA E E A     LFDF+ TLP++M + L LM  L+ ++Y PL   +D+R   I+   + 
Sbjct: 8   LAIETEAAKPEGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNE 67

Query: 134 VKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEAL 193
            +   ++  +L  Q    +  AR   S   N  + E Q  V  KL E +KK + EL  A 
Sbjct: 68  AEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASAT 127

Query: 194 GSLEQQKEDTIKSLDSQISALSDDIVKKVLPV 222
             LE QK++ +KSL+S++  LS  I++K+L +
Sbjct: 128 NKLELQKDEALKSLESEVQTLSTKILEKLLGI 159

[Close]

BLAST of Spo11629.1 vs. TAIR (Arabidopsis)
Match: AT4G32260.1 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)

HSP 1 Score: 218.8 bits (556), Expect = 3.400e-57
Identity = 137/220 (62.27%), Postives = 166/220 (75.45%), Query Frame = 1

		  
Query: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60
           MA   + +SSK L + ++     + + P  K   L   P  L     L    L  ++ TA
Sbjct: 1   MAANSIMASSKPLISLSSNQQPNRVQIP--KFAKLPQIPKSLTSSTDLRSKALSLSSATA 60

Query: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120
             L L      PS+AE +EKA LFDFNLTLPII+ EFLFLMFALDK+YY+PLG+FMD+RD
Sbjct: 61  KSLALIAAFAPPSMAEAMEKAQLFDFNLTLPIIVVEFLFLMFALDKVYYSPLGNFMDQRD 120

Query: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180
           ASIKE+L+ VKDTS+EVK+L+EQA AVMRAARAEI+AALNKMKKETQ+EVE KLAEGRKK
Sbjct: 121 ASIKEKLASVKDTSTEVKELDEQAAAVMRAARAEIAAALNKMKKETQVEVEEKLAEGRKK 180

Query: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLP 221
           +E EL+EAL SLE QKE+TIK+LDSQI+ALS+DIVKKVLP
Sbjct: 181 VEEELKEALASLESQKEETIKALDSQIAALSEDIVKKVLP 218

The following BLAST results are available for this feature:

BLAST of Spo11629.1 vs. NCBI nr
BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
BLAST of Spo11629.1 vs. TAIR (Arabidopsis)

BLAST of Spo11629.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|461595\|sp\|P31853.2\|ATPX_SPIOL	4.9e-106	100.	RecName: Full=ATP synthase sub...	[more]
gi\|448445\|prf\|\|1917214A	3.6e-101	96.8	CF0 ATP synthase:SUBUNIT=9	[more]
gi\|731377526\|ref\|XP_010667898.1\|	1.8e-76	75.6	PREDICTED: uncharacterized pro...	[more]
gi\|870841169\|gb\|KMS95052.1\|	1.8e-76	75.6	hypothetical protein BVRB_0129...	[more]
gi\|970034407\|ref\|XP_015078527.1\|	1.5e-62	69.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11629.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QQW2_SPIOL	3.4e-106	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B5H5_BETVU	1.3e-76	75.6	Uncharacterized protein OS=Bet...	[more]
M1BTY8_SOLTU	1.0e-62	69.4	Uncharacterized protein OS=Sol...	[more]
K4C7M8_SOLLC	1.0e-62	69.4	Uncharacterized protein OS=Sol...	[more]
M1BTW9_SOLTU	3.0e-62	69.0	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo11629.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
ATPX_SPIOL	3.1e-108	100.	ATP synthase subunit b', chlor...	[more]
ATPX_CHLRE	4.4e-22	36.2	ATP synthase subunit b', chlor...	[more]
ATPX_TRIEI	5.7e-14	34.0	ATP synthase subunit b' OS=Tri...	[more]
ATPX_SYNP1	7.5e-14	30.8	ATP synthase subunit b' OS=Syn...	[more]
ATPX_CYAPA	3.7e-13	34.8	ATP synthase B' chain, cyanell...	[more]

BLAST of Spo11629.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT4G32260.1	3.4e-57	62.2	ATPase, F0 complex, subunit B/...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002146	ATPase, F0 complex, subunit B/B', bacterial/chloroplast	PFAM	PF00430	ATP-synt_B	coord: 90..219 score: 7.3
None	No IPR available	unknown	Coil	Coil	coord: 178..198 score: -coord: 123..168 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006285	base-excision repair, AP site formation
biological_process	GO:0048653	anther development
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000737	DNA catabolic process, endonucleolytic
biological_process	GO:0006508	proteolysis
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0019852	L-ascorbic acid metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010731	protein glutathionylation
biological_process	GO:0010583	response to cyclopentenone
biological_process	GO:0009636	response to toxic substance
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0043900	regulation of multi-organism process
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009853	photorespiration
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009657	plastid organization
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0009595	detection of biotic stimulus
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0010200	response to chitin
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0009409	response to cold
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0045174	glutathione dehydrogenase (ascorbate) activity
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25503	0.77	Barchart \| Table
Spo10820	0.76	Barchart \| Table
Spo01224	0.75	Barchart \| Table
Spo01967	0.75	Barchart \| Table
Spo27236	0.75	Barchart \| Table
Spo24771	0.75	Barchart \| Table
Spo24867	0.71	Barchart \| Table
Spo09460	0.70	Barchart \| Table
Spo00538	0.69	Barchart \| Table
Spo16436	0.68	Barchart \| Table
Spo04153	0.68	Barchart \| Table
Spo10817	0.67	Barchart \| Table
Spo00754	0.66	Barchart \| Table
Spo15984	0.66	Barchart \| Table
Spo23874	0.66	Barchart \| Table
Spo15244	0.66	Barchart \| Table
Spo04387	0.65	Barchart \| Table
Spo25075	0.65	Barchart \| Table