Spo11657 (gene)

Overview
NameSpo11657
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSerine/threonine-protein kinase (2.7.11.1)
Locationchr4 : 51152779 .. 51153392 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGTATCCTTCAAAACCAATACCAAGTACATTTCCCTCACCACTTAAAAAATACATATATCTGTTTCTCCGGGGTAAGTTAAAGACAAATAGCAGTAAAGAGACTTTCAAAAGCTTCAAGGTAAGGATTTGAGCAGTTCAAGAATGAAGTTATGCTCACTGCAAAACTTCAGCATGTAAACTTGGTTAAGGTGCTGGGATTTTGCGTGGAAAGAGAGGAAAAAATGCTCATTTATGAATACCTTGCAATTAGCAGCTTGGATTTTTACCTTTTTGGTATAACTTTTGCTTGACTATGTTCTATGATGATATAAAATCTAGCTCAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA

mRNA sequence

ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA

Coding sequence (CDS)

ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA

Protein sequence

MKVFSFKEITAATNNFSFYKKLGEGGYGPVYKEQRHEHITFWQLIDSFPRLLADLVERLQLNWGKHAHIIKKNNSRPLIPARILKANHHSPRSKSQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11657.1Spo11657.1mRNA


Homology
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BLAST of Spo11657.1 vs. TAIR (Arabidopsis)
Match: AT1G11300.1 (protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding)

HSP 1 Score: 47.8 bits (112), Expect = 4.500e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 

		  

Query: 1   MKVFSFKEITAATNNFSFYKKLGEGGYGPVYKEQRHE 38
           + +F F+ + AATNNFS   KLG+GG+GPVYK +  E
Sbjct: 494 LPLFEFQVLAAATNNFSLRNKLGQGGFGPVYKGKLQE 530
The following BLAST results are available for this feature:
BLAST of Spo11657.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11657.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11657.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11657.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G11300.14.5e-654.0protein serine/threonine kinas... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011009Protein kinase-like domainunknownSSF56112Protein kinase-like (PK-like)coord: 2..37
score: 1.
NoneNo IPR availableGENE3D3.30.200.20coord: 3..36
score: 7.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0009407 toxin catabolic process
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006508 proteolysis
biological_process GO:0006768 biotin metabolic process
biological_process GO:0006464 cellular protein modification process
biological_process GO:0007165 signal transduction
biological_process GO:0006952 defense response
biological_process GO:0071310 cellular response to organic substance
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004602 glutathione peroxidase activity
RNA-Seq Expression