Spo11693 (gene)

Overview
NameSpo11693
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03239 : 4351 .. 7380 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGGTGACTCGCAAAGCGCGCTGCTCCGTGTCTTCGCTGCTTCACGAATCAGGACCACCGGGCACCAAGCCTGAGTTCCTGGCGGCAAATGGTTGGCGGCGGACGACTAGAGACCTGAGACCACGCAAGTCACGACTCCATACTCGCGTGTCACGACCCAATACCATCGCCCCCTGAGGTGCCTTAATTTCATTTTTTAATTTCAGATTTTCAGGTAACCTACTTTAAATCATAATTCAGTTTCCAGTTTTTTGTGTTTTTGGCGTAACTAATTTGTTTGCGGTTTTGGGGTTGACTTTCCAGCAATGATGAAATGATTGTCAATTCTCTAAATATAAGTATTGTGTATCATGGGGTGTATAAATGTTGATTGTAGAAAAGTTTTATCATGTTGTCTTTTGATTTATTGACCGATTAGTCTATCTCCAATAGAAGTGGAAAAACTCTTTTTAGAATTATGTTCTTTTGCTATTGGTGTTAATTGAATTGTCTTTGTGGTTTTAAATCCTTATTGAGTTATTATAGTCTTCCGAGTGCCTTGATTCTCTCTTTGGATTTCTTTTGTATTGATGACTCTGTATTTTCTAAATTAGTGTTCATGTTGATCTGAACTCCCTCTCCTTTCAATTTTTTTTTATTACAGTTATATTTTCTTTTATGTGATTGTTATGATTGAAATTTCTTTTTTGTTTTTAGTTTCTTGAACATTAATTCAATGGTTGTGTTAGCTAAACGAGATATTTTCATTGGATGCAGTATTCATAAGGTTTCTAATTAATTGTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGGTTGTCTTCTAGTCTTAATCTTGTTTCTCAACACTTTGCTTCTAGCTTACTACTAATGCATCTTTAGATCAATGGTCTTTTCTCGGAAATTCCACTTACTGAACGTTGATACTGGCATACGATGTCTGCTTTTGCATTGCCTTCTTGCCTTGTGCAGATATTTATTTGGCTGCTTTATTGTCCTGGCTTACCATTTCACCTCTTTATTGCAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGGTATACGACTGTGAATGTTCAGTTTGGACTGTAAGTTGCCATGTAGCTTTTTTGAATTGACGTTGTCTTGGCATTCTGTGTTGTGCTGCAGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGGTTTGTGGACAAACTTCTTTATTTGGATTTTGTAGGATTCTTCATTTCAATAAGTTGTTCAAGTGAGCACTTGGATATAAATAGGGGAAATTGTTATTGGAAATATTGGTGACTAGAGAGTTGTGCTACGATCCATACATAGTGATAGTTTACAACTTTACATGATGATGTCTAGTGGAGCTAAGTAGCTAACTACTTGTCTTCATTAGATGATTTTAACAATGCACTTGTTTAATGAGGAATATGTTATTGAGGAAACCCGAGGGCTATTGCACCAGTCTTCAGACTAGGATAGAAAACGCTTGAGTTAAGGACATTGTAGACTGAGGACCTATTATTTTCTACTTGTGTGAACTTTCAATTATAAGGAAGTCCTTGTATGCAAATCAAGTATTTCAATTATAATATTACTAAGGTATTACAATTATCACATTACCCCTCACCCCCGAATATTCCATTGTAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGACCACAATGCAGCAACGCTGCAAGCACCCAATAGAGAACAACAATCACCAGCACCATTGTGCAGAAGCAATCTGGAAAACAACTGCACAATAGCAGCACCTGCAACAATAGAACAAAGCTCACAACTATGCTGCAGATCACAGTGGCAAAAAACCCAAAATACAGCACTAAAACACCCGCACACAGCAGACCTGAAATCTGCAACCAGAACAAAACAGCAGCATAACACAACCTAAAAAAACAGAGGGAATTCCGGAGTGCAAGATGAAGTTTCTTTAGTTGCGCGAACGCAGGGCTTTTGCTGCTCTCCTACGTACTGATGTGCAGGCTATCCTACGTATTGAATGCCGTCTAGCAAGAATGCAGGATGGAAAGAAATAATCTTCTAGTTGTGCACATCAGTTTGAGTGGCTTCAGTCTACTATTTAAGGTACACATTCTGATTTTGTATTAGTCTTTCTATTTAATTTCAATGACTGTTTTATGAATTACTTTGAGGGCTAGAAATCTAGAATCACCTCCAAGGTCTCAGACATTAGTCCTGACTATCAAGTTTTTATTTTTTTTATTTCGTAAACTTTATTATATATTTATATATGCATGAACATATTCATATGTTGAAGTATTATGCTATAAGGTTTATAATTGTTTATTTTGTTACATGATTTACAGATTGTGCACCCAACAAGTTTGTGCTTCAAACTACCTGATTAGTGATTACATGAGTTTGGAAGAAGGAGCAATGTGTGAACCTCTAAGCGTTGGTGTCTACAGTTGCCCGTCGAGCTGAGGTTGGGGCTAAGGCTATAGTTTTTATCATTGGAGCGGGAATCAAGCAGTTTAAAAATGGAGATGTAAATCAGTTGGCCTATTTCAACAGTTACACCTTCATTCGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCGTCCTTTTGCTGCTCTCCTACATACTGATGTGCAAGCTCATTAAGAACACCACGGGCTTGGAAGAAGGGGAAGGGTATTGTTGCGTCATGTTATTGTTTTTTTCTTTCCATTTTTTAAATGCTAGTAGTAACTTGTAAAATGTACGTTATTTTTTAATATATTTAATTAATGCTTGTTTTGAAAAAAAAAA

mRNA sequence

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGATTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGACCACAATGCAGCAACGCTGCAAGCACCCAATAGAGAACAACAATCACCAGCACCATTGTGCAGAAGCAATCTGGAAAACAACTGCACAATAGCAGCACCTGCAACAATAGAACAAAGCTCACAACTATGCTGCAGATCACAGTGGCAAAAAACCCAAAATACAGCACTAAAACACCCGCACACAGCAGACCTGAAATCTGCAACCAGAACAAAACAGCAGCATAACACAACCTAAAAAAACAGAGGGAATTCCGGAGTGCAAGATGAAGTTTCTTTAGTTGCGCGAACGCAGGGCTTTTGCTGCTCTCCTACGTACTGATGTGCAGGCTATCCTACGTATTGAATGCCGTCTAGCAAGAATGCAGGATGGAAAGAAATAATCTTCTAGTTGTGCACATCAGTTTGAGTGGCTTCAGTCTACTATTTAAGATTGTGCACCCAACAAGTTTGTGCTTCAAACTACCTGATTAGTGATTACATGAGTTTGGAAGAAGGAGCAATGTGTGAACCTCTAAGCGTTGGTGTCTACAGTTGCCCGTCGAGCTGAGGTTGGGGCTAAGGCTATAGTTTTTATCATTGGAGCGGGAATCAAGCAGTTTAAAAATGGAGATGTAAATCAGTTGGCCTATTTCAACAGTTACACCTTCATTCGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCGTCCTTTTGCTGCTCTCCTACATACTGATGTGCAAGCTCATTAAGAACACCACGGGCTTGGAAGAAGGGGAAGGGTATTGTTGCGTCATGTTATTGTTTTTTTCTTTCCATTTTTTAAATGCTAGTAGTAACTTGTAAAATGTACGTTATTTTTTAATATATTTAATTAATGCTTGTTTTGAAAAAAAAAA

Coding sequence (CDS)

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGATTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGA

Protein sequence

MTTSCLRSSLNWDFQVVNVSSPMDYVRSKEENSLRILKRSWSFFCICNTCCGLKDENLNCQIYVLYYEAKTFIKQIILLVLILKYPKQREIRSLEVVFLRFKMNSCRPINSARKAP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11693.1Spo11693.1mRNA


Homology
[Close]
BLAST of Spo11693.1 vs. NCBI nr
Match: gi|902186869|gb|KNA10796.1| (hypothetical protein SOVF_140990 isoform A [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
[Close]
BLAST of Spo11693.1 vs. NCBI nr
Match: gi|902186870|gb|KNA10797.1| (hypothetical protein SOVF_140990 isoform B [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
[Close]
BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140990 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
[Close]
BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU30_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140990 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
The following BLAST results are available for this feature:
BLAST of Spo11693.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902186869|gb|KNA10796.1|1.2e-7100.hypothetical protein SOVF_1409... [more]
gi|902186870|gb|KNA10797.1|1.2e-7100.hypothetical protein SOVF_1409... [more]
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BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QWA9_SPIOL8.5e-8100.Uncharacterized protein OS=Spi... [more]
A0A0K9QU30_SPIOL8.5e-8100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo11693.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11693.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0050826 response to freezing
biological_process GO:0019915 lipid storage
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0006396 RNA processing
biological_process GO:0048825 cotyledon development
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0048575 short-day photoperiodism, flowering
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0008643 carbohydrate transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006281 DNA repair
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0051301 cell division
biological_process GO:0030001 metal ion transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006810 transport
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005840 ribosome
cellular_component GO:0000124 SAGA complex
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005622 intracellular
molecular_function GO:0005215 transporter activity
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo079690.85Barchart | Table
Spo220910.81Barchart | Table
Spo120840.78Barchart | Table
Spo188230.77Barchart | Table
Spo168350.76Barchart | Table
Spo244160.75Barchart | Table
Spo241900.74Barchart | Table
Spo063410.74Barchart | Table
Spo099980.73Barchart | Table
Spo021050.73Barchart | Table
Spo024700.73Barchart | Table
Spo216050.73Barchart | Table
Spo164670.72Barchart | Table
Spo163780.72Barchart | Table
Spo011280.72Barchart | Table
Spo030070.72Barchart | Table
Spo249360.72Barchart | Table
Spo051100.72Barchart | Table
Spo065080.72Barchart | Table
Spo232980.72Barchart | Table
Spo102110.72Barchart | Table
Spo214730.72Barchart | Table
Spo170390.72Barchart | Table
Spo118350.71Barchart | Table
Spo254140.71Barchart | Table
Spo126990.71Barchart | Table
Spo067110.71Barchart | Table
Spo249370.71Barchart | Table
Spo154770.71Barchart | Table
Spo004440.70Barchart | Table
Spo014780.70Barchart | Table
Spo022080.70Barchart | Table
Spo065500.70Barchart | Table
Spo218180.70Barchart | Table
Spo271010.70Barchart | Table
Spo281730.70Barchart | Table
Spo030080.69Barchart | Table
Spo213940.69Barchart | Table
Spo069290.69Barchart | Table
Spo103130.69Barchart | Table
Spo120510.69Barchart | Table
Spo204630.69Barchart | Table
Spo024030.69Barchart | Table
Spo267260.69Barchart | Table
Spo216380.68Barchart | Table
Spo180010.68Barchart | Table
Spo041140.68Barchart | Table
Spo249160.68Barchart | Table
Spo192310.68Barchart | Table
Spo258080.68Barchart | Table
Spo112650.68Barchart | Table
Spo095650.68Barchart | Table
Spo216290.68Barchart | Table
Spo093060.68Barchart | Table
Spo230920.68Barchart | Table
Spo222750.67Barchart | Table
Spo064970.67Barchart | Table
Spo038780.67Barchart | Table
Spo218590.67Barchart | Table
Spo178500.67Barchart | Table
Spo165590.66Barchart | Table
Spo214440.66Barchart | Table
Spo240640.66Barchart | Table
Spo241970.66Barchart | Table
Spo253680.66Barchart | Table
Spo114550.66Barchart | Table
Spo206940.65Barchart | Table
Spo202310.65Barchart | Table
Spo266660.65Barchart | Table
Spo132500.65Barchart | Table
Spo210990.65Barchart | Table
Spo107540.65Barchart | Table