Spo11694 (gene)

Overview
NameSpo11694
Typegene
OrganismSpinacia oleracea (Spinach)
Description(BnaA04g06340D protein) (BnaC09g16540D protein) (BnaC09g26900D protein) (BnaC09g29260D protein) (BnaCnng13070D protein) (BnaUnng00860D protein)
LocationSpoScf_23915 : 47 .. 328 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAAC

mRNA sequence

TCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAAC

Coding sequence (CDS)

TCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAAC

Protein sequence

SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11694.1Spo11694.1mRNA


Homology
[Close]
BLAST of Spo11694.1 vs. NCBI nr
Match: gi|674871096|emb|CDY63598.1| (BnaUnng00860D [Brassica napus])

HSP 1 Score: 183.0 bits (463), Expect = 2.500e-43
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 

		  

Query: 1   SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTG 60
           SN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASSHSVTG
Sbjct: 9   SNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASSHSVTG 68

Query: 61  GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95
           GVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 69  GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102
[Close]
BLAST of Spo11694.1 vs. NCBI nr
Match: gi|145408582|ref|YP_001152206.1| (ORF137 [Pinus koraiensis])

HSP 1 Score: 179.1 bits (453), Expect = 3.600e-42
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 

		  

Query: 1   SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTG 60
           SN+  Q+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT GMASSHSVTG
Sbjct: 44  SNEEAQKALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTWGMASSHSVTG 103

Query: 61  GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95
           GVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 104 GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 137
[Close]
BLAST of Spo11694.1 vs. NCBI nr
Match: gi|1012337673|gb|KYP48942.1| (hypothetical protein KK1_029343, partial [Cajanus cajan])

HSP 1 Score: 176.8 bits (447), Expect = 1.800e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1 

		  

Query: 5  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 64
          TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 65 ARERIHRRMADRRLLAIPASCRRVAACNPN 95
          ARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61 ARERIHRRMADRRLLAIPASCRRVAAYNPN 90
[Close]
BLAST of Spo11694.1 vs. NCBI nr
Match: gi|734316808|gb|KHN02290.1| (hypothetical protein glysoja_002314 [Glycine soja])

HSP 1 Score: 138.7 bits (348), Expect = 5.400e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1 

		  

Query: 15  EVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMA 74
           EVIQPHLPVRLPCYDFTPVTSPAF IP  AVKVTTSGMASSHSVTG VYKARERIHRR+A
Sbjct: 68  EVIQPHLPVRLPCYDFTPVTSPAFDIPFFAVKVTTSGMASSHSVTGSVYKARERIHRRLA 127

Query: 75  DRRLLAIPASCRRVAACNPN 95
           DR+LLAIP S RRV   NPN
Sbjct: 128 DRQLLAIPTSWRRVVTYNPN 147
[Close]
BLAST of Spo11694.1 vs. NCBI nr
Match: gi|1012327041|gb|KYP38790.1| (hypothetical protein KK1_039958, partial [Cajanus cajan])

HSP 1 Score: 136.3 bits (342), Expect = 2.700e-29
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1 

		  

Query: 5  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 64
          TQQALALPEKEV QP LPVRLPCYDFTPVTSPAF IPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1  TQQALALPEKEVTQPPLPVRLPCYDFTPVTSPAFDIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 65 ARERIHRRMADRR 78
          ARERIHR MADRR
Sbjct: 61 ARERIHRHMADRR 73
[Close]
BLAST of Spo11694.1 vs. UniProtKB/TrEMBL
Match: A0A078E1E5_BRANA (BnaA04g06340D protein OS=Brassica napus GN=BnaC09g16540D PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.700e-43
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 

		  

Query: 1   SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTG 60
           SN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASSHSVTG
Sbjct: 9   SNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASSHSVTG 68

Query: 61  GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95
           GVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 69  GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102
[Close]
BLAST of Spo11694.1 vs. UniProtKB/TrEMBL
Match: A4QMB2_PINKO (ORF137 OS=Pinus koraiensis PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.500e-42
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 

		  

Query: 1   SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTG 60
           SN+  Q+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT GMASSHSVTG
Sbjct: 44  SNEEAQKALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTWGMASSHSVTG 103

Query: 61  GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95
           GVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 104 GVYKARERIHRRMADRRLLAIPASCRRVAACNPN 137
[Close]
BLAST of Spo11694.1 vs. UniProtKB/TrEMBL
Match: A0A151S2B1_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_029343 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.200e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1 

		  

Query: 5  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 64
          TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 65 ARERIHRRMADRRLLAIPASCRRVAACNPN 95
          ARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61 ARERIHRRMADRRLLAIPASCRRVAAYNPN 90
[Close]
BLAST of Spo11694.1 vs. UniProtKB/TrEMBL
Match: M1DI68_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039021 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.400e-37
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 

		  

Query: 14  KEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRM 73
           +EVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRM
Sbjct: 161 REVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRM 220

Query: 74  ADRRLLAIPASCRRVAACNPN 95
           ADRRLLAIPASCRRVAACNPN
Sbjct: 221 ADRRLLAIPASCRRVAACNPN 241
[Close]
BLAST of Spo11694.1 vs. UniProtKB/TrEMBL
Match: A0A0B2NZ26_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002314 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.800e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1 

		  

Query: 15  EVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMA 74
           EVIQPHLPVRLPCYDFTPVTSPAF IP  AVKVTTSGMASSHSVTG VYKARERIHRR+A
Sbjct: 68  EVIQPHLPVRLPCYDFTPVTSPAFDIPFFAVKVTTSGMASSHSVTGSVYKARERIHRRLA 127

Query: 75  DRRLLAIPASCRRVAACNPN 95
           DR+LLAIP S RRV   NPN
Sbjct: 128 DRQLLAIPTSWRRVVTYNPN 147
The following BLAST results are available for this feature:
BLAST of Spo11694.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|674871096|emb|CDY63598.1|2.5e-4396.8BnaUnng00860D [Brassica napus][more]
gi|145408582|ref|YP_001152206.1|3.6e-4294.6ORF137 [Pinus koraiensis][more]
gi|1012337673|gb|KYP48942.1|1.8e-4198.8hypothetical protein KK1_02934... [more]
gi|734316808|gb|KHN02290.1|5.4e-3086.2hypothetical protein glysoja_0... [more]
gi|1012327041|gb|KYP38790.1|2.7e-2994.5hypothetical protein KK1_03995... [more]
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BLAST of Spo11694.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A078E1E5_BRANA1.7e-4396.8BnaA04g06340D protein OS=Brass... [more]
A4QMB2_PINKO2.5e-4294.6ORF137 OS=Pinus koraiensis PE=... [more]
A0A151S2B1_CAJCA1.2e-4198.8Uncharacterized protein (Fragm... [more]
M1DI68_SOLTU1.4e-3798.7Uncharacterized protein OS=Sol... [more]
A0A0B2NZ26_GLYSO3.8e-3086.2Uncharacterized protein OS=Gly... [more]
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BLAST of Spo11694.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11694.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003824 catalytic activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo166060.71Barchart | Table