Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAAGACCCGAGACCCCGAATAGAAGATATCCGATTTCATTACCAAACCGGCAAAGAAGATGTAAAAATAATGTCCAAGTTAGGACAACTCAAAGCCTCCACCTGTACCTGCACTCACTCATTTTCCACAGTTTAAAAACCTGATCAGCCGCTTCTGCTTTCTCTCTCCTCCGCACTTCCATGGCTTCATCTTCCAAATTCTCCAAAAATGATCTTGTCTCTACTTCACCACCACCGCCACCACCACCTCCAACTCCTCTACAGCAACACCAACAACCACCTCTCAAAAAACCAAGCGACCCCATTAACATCAGCAAGAAACGAAAGCTTCACACTTCAACTCCCTCTGACAACAACAACATTCTCTCTCCTTCCATGGAAGACCTCTCTCTCTCAAAGTCCTCACACCTCACTCATCAAGAGGTCCTCCGCCGCCGTCTCCACCGTGTTCGGAGGCTCTCCACTGTTTACAGAGACCATTACTGGGCTTTGATGGAGGATCTTAGGGTTCATTATCGGGATTACTACTGGAAGTACGGTGTTAGCCCTTGCAAGGAGGAGGATGAGAGAGAAAGTGGCGGTGATCGAGAATTCGCCGGATTCAATGTTGAAGGATGTGGAGAATCCAATAACAATAACAACAATAGCACCATTACTAATAATCATGGAAATTGCGTTGTTGCGGGAAATGGTGGTGGTGGCGGAAAATTAGGGTTAGGGTTTGCAGGTGAGAGTGTGCCGGAATTCAAATCCTCTGGGAATAATCGGTGTGCTTATGTAACGTGTAGGTTGAAGGCTATGGCGTTAACTAGCTTTTGCTATTTGCACATTTTGTCTGATCCTCAGCAGAACCTGTACAAGGCTTGCAACTATATTATCAAGATGTAATAATCTCTCCTCCTTTAGTCATTACTTTTTCTCTTGATTATTTATTCTGATTTAATTTGCTAACTGCCTTTTAATTTGTTGCATAAACACTCTTGACTATTATTTCTGATTTATTGCTATTTGGCTTTTAATTTGTTGCATGATTGTTCAATATGTTGAAAGTATGGATGATTCTGGTAGGCATAGGAACTTGAACGGCATCATTTTAGGTGGCTGGTGGCCATTTCCGTTGTACAACCGGAGGCTGAAGGCCATTCCCGTTGTACAACCGGAGGTTGATGGCAATTTCTGTTGTTCAAACGGAGGCTGATGGCAATTTTAGCTGTATAACAGGATGAATTGTACAACGAATGCTACTCTTGTTTTTTAGCTCAGTTGCTCATTTGGGGAGCAACAATATGAGCGGGGTTGTACTTAGATGCTCTGCTTTGATGGTTTACAAATACTGATGTTGAATTATATGGTTGTTGGTGAACTGGTGAAGCATGATATAAAACTTGTGCTGATTGGATGGAAAAATAATAATTGTTGTGTATTGAAAGGCTTAATTTTCACATCTATTGAGTTTGGAGATACTCCCTCCATTCTATTTTATTTGACAGTTTGGAGATACTCCCCCCATACTTCGAATCAGACTATCATTCTGGACGAGGGAGTACCTTTGAAAGTGTCAAAGGAAACAAGGAGTAGTTTGAAGGAATAAAGAGCTTAGCTTTCCGTTGATTATGTGCAAAATATACATATAAATACAAGGCAAAGGAGAGACTTAAACCTAACTTGTTTAGGACCCTAGGAAACCGCTTCACATAAGCAATACAACACGTTAACGAACTAGCTCATAGTTACCTGAATACCATATATTCCCTAATAGGAAGTATACTATAAGGCTATCAACAGGGTTTTGTATGCTTTTTGAGTGAAAATTTCCCTTTCTTTCCAATATCAGCACTGGTTGTATTGCCACACCCCCCCCCCCCCCCCCCCCTATATTTAGGTGGGAAAAGAACTCTGGTGGCCAATTGGGCTCAAAACCTCATCGGAAAAACAATTTTCCTACTTTATTTTTTGATCTTTTGTTTTCTTCTATCATGCCTCCCTGTTCTACTATCTCCATTTTGCTAGAAAAAATGTTATCCATCTACTACTAATCAGTTAAAGTTTATCGACAATTAGAAAAGAAGGTATGAATTGAAACTTTTAGTGATAATCATCCTTTTTCAGTTTTTCATCAGTCATCACTTGATCTCTAGTATTTGAGGAAAGATAAATAATACAAAGTCCAATAACATTCAGTTCATCAAATCGTCTTTCTGTAGTTTGCCAGCCTAGGAAAGATACCAAATCAGAAGTGTGCACAGAGCAAAGTTTCTCATAGAAAAATCCGCCATTACACTCTCATCTCTCTTAAAATTTAGAATAGTGAGTAGAAGATTTGTGAGATAACAGAATTAGTTTGCAAAAAGCTGTAGCAGCAACAACAATAACAACAATTGGAATGGGGCTGCAAGGTGGTAAATGGGAGAATCAGAGCGAGAGGGAAGGAGAGAGTGAAAAGGGAAGGAAAAAGAAGAGTATCAAGTTCTCTTAACTGATGGAAGTGTGATGCACACACCTATTTCTCCTCTCCGGCTAAGTTTCAGGCCCACTGGATCGCCACATTTGTTTTTTGTTACATATATGTGGTCAGAGGATACCTGTTTGGCAAATGAAATACATTGTAATTTCTATTTGGGCATTCGACCATTTAGCATTTCAAAAAAGCTGGTATTATTAGCGGTTTTATGAAGTTTAACATACAGCACTGTTTAGTGATGCTTACCAAAATGTATTTCTTGTATATCCAGTGCACAACAGGGACCGATACTTTGCGGGAGGCCAATACTAAAAGCAACGGTTCCATCACTGTGCAACATTCACTTTCCGAAGGCTCAGAAAGATGTTAAACATGCGTTGAAGAAAGGAGGTCTAAATGTGTCATCATCTAGTAAACTTGCTGACAAGTTCCATGTTATTGTAGCAGAGTATGTTCAACTTATACAGTCCAAGAGAAGGGCAGCTCAGAAGCGTAATGTCAAGACTGTTGTTGTCAAAGAAGAATCAATGTGCTGAACAACTTTTCTGCTTCAGGATAATAACTTGCTGGGCTAAGTTGAATGCTAAATTTTGTCTCGGGGAGAGAGTTGCTGCTTGTTATCTATGTTACCCGCGCATGATATGCCTTGAGACTTTTTATCCAAGTTAGCCTTTCATAACTTTGCTGCCAATGTATTTATGTTCAAAAATGTATGAGGCGTCACCTTATTTATGCTATAGTGTTGTTGTTTAGACCCACAGTTTGTAAATATGTAAGTTTATTACATGTTGTATGTATGTAAAGTTAGATTTACATTTTGAAG TATAAGACCCGAGACCCCGAATAGAAGATATCCGATTTCATTACCAAACCGGCAAAGAAGATGTAAAAATAATGTCCAAGTTAGGACAACTCAAAGCCTCCACCTGTACCTGCACTCACTCATTTTCCACAGTTTAAAAACCTGATCAGCCGCTTCTGCTTTCTCTCTCCTCCGCACTTCCATGGCTTCATCTTCCAAATTCTCCAAAAATGATCTTGTCTCTACTTCACCACCACCGCCACCACCACCTCCAACTCCTCTACAGCAACACCAACAACCACCTCTCAAAAAACCAAGCGACCCCATTAACATCAGCAAGAAACGAAAGCTTCACACTTCAACTCCCTCTGACAACAACAACATTCTCTCTCCTTCCATGGAAGACCTCTCTCTCTCAAAGTCCTCACACCTCACTCATCAAGAGGTCCTCCGCCGCCGTCTCCACCGTGTTCGGAGGCTCTCCACTGTTTACAGAGACCATTACTGGGCTTTGATGGAGGATCTTAGGGTTCATTATCGGGATTACTACTGGAAGTACGGTGTTAGCCCTTGCAAGGAGGAGGATGAGAGAGAAAGTGGCGGTGATCGAGAATTCGCCGGATTCAATGTTGAAGGATGTGGAGAATCCAATAACAATAACAACAATAGCACCATTACTAATAATCATGGAAATTGCGTTGTTGCGGGAAATGGTGGTGGTGGCGGAAAATTAGGGTTAGGGTTTGCAGGTGAGAGTGTGCCGGAATTCAAATCCTCTGGGAATAATCGGTGTGCTTATGTAACGTGTAGGTTGAAGGCTATGGCGTTAACTAGCTTTTGCTATTTGCACATTTTGTCTGATCCTCAGCAGAACCTGTACAAGGCTTGCAACTATATTATCAAGATTGCACAACAGGGACCGATACTTTGCGGGAGGCCAATACTAAAAGCAACGGTTCCATCACTGTGCAACATTCACTTTCCGAAGGCTCAGAAAGATGTTAAACATGCGTTGAAGAAAGGAGGTCTAAATGTGTCATCATCTAGTAAACTTGCTGACAAGTTCCATGTTATTGTAGCAGAGTATGTTCAACTTATACAGTCCAAGAGAAGGGCAGCTCAGAAGCGTAATGTCAAGACTGTTGTTGTCAAAGAAGAATCAATGTGCTGAACAACTTTTCTGCTTCAGGATAATAACTTGCTGGGCTAAGTTGAATGCTAAATTTTGTCTCGGGGAGAGAGTTGCTGCTTGTTATCTATGTTACCCGCGCATGATATGCCTTGAGACTTTTTATCCAAGTTAGCCTTTCATAACTTTGCTGCCAATGTATTTATGTTCAAAAATGTATGAGGCGTCACCTTATTTATGCTATAGTGTTGTTGTTTAGACCCACAGTTTGTAAATATGTAAGTTTATTACATGTTGTATGTATGTAAAGTTAGATTTACATTTTGAAG ATGGCTTCATCTTCCAAATTCTCCAAAAATGATCTTGTCTCTACTTCACCACCACCGCCACCACCACCTCCAACTCCTCTACAGCAACACCAACAACCACCTCTCAAAAAACCAAGCGACCCCATTAACATCAGCAAGAAACGAAAGCTTCACACTTCAACTCCCTCTGACAACAACAACATTCTCTCTCCTTCCATGGAAGACCTCTCTCTCTCAAAGTCCTCACACCTCACTCATCAAGAGGTCCTCCGCCGCCGTCTCCACCGTGTTCGGAGGCTCTCCACTGTTTACAGAGACCATTACTGGGCTTTGATGGAGGATCTTAGGGTTCATTATCGGGATTACTACTGGAAGTACGGTGTTAGCCCTTGCAAGGAGGAGGATGAGAGAGAAAGTGGCGGTGATCGAGAATTCGCCGGATTCAATGTTGAAGGATGTGGAGAATCCAATAACAATAACAACAATAGCACCATTACTAATAATCATGGAAATTGCGTTGTTGCGGGAAATGGTGGTGGTGGCGGAAAATTAGGGTTAGGGTTTGCAGGTGAGAGTGTGCCGGAATTCAAATCCTCTGGGAATAATCGGTGTGCTTATGTAACGTGTAGGTTGAAGGCTATGGCGTTAACTAGCTTTTGCTATTTGCACATTTTGTCTGATCCTCAGCAGAACCTGTACAAGGCTTGCAACTATATTATCAAGATTGCACAACAGGGACCGATACTTTGCGGGAGGCCAATACTAAAAGCAACGGTTCCATCACTGTGCAACATTCACTTTCCGAAGGCTCAGAAAGATGTTAAACATGCGTTGAAGAAAGGAGGTCTAAATGTGTCATCATCTAGTAAACTTGCTGACAAGTTCCATGTTATTGTAGCAGAGTATGTTCAACTTATACAGTCCAAGAGAAGGGCAGCTCAGAAGCGTAATGTCAAGACTGTTGTTGTCAAAGAAGAATCAATGTGCTGA MASSSKFSKNDLVSTSPPPPPPPPTPLQQHQQPPLKKPSDPINISKKRKLHTSTPSDNNNILSPSMEDLSLSKSSHLTHQEVLRRRLHRVRRLSTVYRDHYWALMEDLRVHYRDYYWKYGVSPCKEEDERESGGDREFAGFNVEGCGESNNNNNNSTITNNHGNCVVAGNGGGGGKLGLGFAGESVPEFKSSGNNRCAYVTCRLKAMALTSFCYLHILSDPQQNLYKACNYIIKIAQQGPILCGRPILKATVPSLCNIHFPKAQKDVKHALKKGGLNVSSSSKLADKFHVIVAEYVQLIQSKRRAAQKRNVKTVVVKEESMC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11723.1 vs. NCBI nr
Match: gi|902093628|gb|KNA03365.1| (hypothetical protein SOVF_209900 [Spinacia oleracea]) HSP 1 Score: 632.5 bits (1630), Expect = 4.100e-178 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
BLAST of Spo11723.1 vs. NCBI nr
Match: gi|731375243|ref|XP_010667192.1| (PREDICTED: INO80 complex subunit D-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 463.0 bits (1190), Expect = 4.300e-127 Identity = 251/321 (78.19%), Postives = 278/321 (86.60%), Query Frame = 1
BLAST of Spo11723.1 vs. NCBI nr
Match: gi|702433035|ref|XP_010069327.1| (PREDICTED: INO80 complex subunit D-like [Eucalyptus grandis]) HSP 1 Score: 274.6 bits (701), Expect = 2.200e-70 Identity = 166/303 (54.79%), Postives = 203/303 (67.00%), Query Frame = 1
BLAST of Spo11723.1 vs. NCBI nr
Match: gi|590627702|ref|XP_007026513.1| (Uncharacterized protein TCM_021553 [Theobroma cacao]) HSP 1 Score: 253.4 bits (646), Expect = 5.100e-64 Identity = 161/326 (49.39%), Postives = 202/326 (61.96%), Query Frame = 1
BLAST of Spo11723.1 vs. NCBI nr
Match: gi|694418951|ref|XP_009337449.1| (PREDICTED: INO80 complex subunit D-like [Pyrus x bretschneideri]) HSP 1 Score: 248.1 bits (632), Expect = 2.200e-62 Identity = 145/294 (49.32%), Postives = 184/294 (62.59%), Query Frame = 1
BLAST of Spo11723.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7X2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_209900 PE=4 SV=1) HSP 1 Score: 632.5 bits (1630), Expect = 2.800e-178 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
BLAST of Spo11723.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B6L5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_007270 PE=4 SV=1) HSP 1 Score: 463.0 bits (1190), Expect = 3.000e-127 Identity = 251/321 (78.19%), Postives = 278/321 (86.60%), Query Frame = 1
BLAST of Spo11723.1 vs. UniProtKB/TrEMBL
Match: A0A059AUK2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00413 PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 1.500e-70 Identity = 166/303 (54.79%), Postives = 203/303 (67.00%), Query Frame = 1
BLAST of Spo11723.1 vs. UniProtKB/TrEMBL
Match: A0A061EPN2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021553 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 3.600e-64 Identity = 161/326 (49.39%), Postives = 202/326 (61.96%), Query Frame = 1
BLAST of Spo11723.1 vs. UniProtKB/TrEMBL
Match: A0A067L341_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23764 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 1.500e-62 Identity = 152/328 (46.34%), Postives = 200/328 (60.98%), Query Frame = 1
BLAST of Spo11723.1 vs. ExPASy Swiss-Prot
Match: IN80D_DICDI (INO80 complex subunit D OS=Dictyostelium discoideum GN=DDB_G0288447 PE=3 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 8.300e-14 Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = 1
BLAST of Spo11723.1 vs. TAIR (Arabidopsis)
Match: AT2G31600.1 (unknown protein) HSP 1 Score: 197.2 bits (500), Expect = 1.500e-50 Identity = 134/332 (40.36%), Postives = 185/332 (55.72%), Query Frame = 1
BLAST of Spo11723.1 vs. TAIR (Arabidopsis)
Match: AT1G05860.1 (unknown protein) HSP 1 Score: 188.0 bits (476), Expect = 9.400e-48 Identity = 132/326 (40.49%), Postives = 181/326 (55.52%), Query Frame = 1
BLAST of Spo11723.1 vs. TAIR (Arabidopsis)
Match: AT3G53860.1 (unknown protein) HSP 1 Score: 174.1 bits (440), Expect = 1.400e-43 Identity = 120/325 (36.92%), Postives = 166/325 (51.08%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11723.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11723.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11723.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo11723.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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