Spo11802 (gene)

Overview
NameSpo11802
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPre-mRNA-splicing factor SLU7-A
Locationchr4 : 111344501 .. 111345338 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTGCATCAGGTATGATTTCAACTGGAATTTGCAATTCGACACTTTTTAGGGTTTTGGTATATAGCTTTTAGATTTGATTGGATGAATTGCTTGATTTAATTCGAATTGTTCGTGTAAATGGGATGAATTTCTTGATTTAATTTGAATTTTTCGTATATTCAATTGCGTGTAATCCCTAATTCATGATTGTTGAGTTTAGATATCTTGTTAATTTTACTCGAAATTTGATTTTTTGTTTCGCCGGTAAAAAAATATCTTGTTAAACTGGAGCTGTATATGAATTGTTCGTGTAATTAGAGGTTTTCGAAACACTGAACGATTATTGCGCTATTGGAGATGTTTCTAAATTGATTATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGGTGAGTTTCCGATACTTTTATAATCAAGTTTCTTTATGTTCTTTGATTTTGGTGGTGTTGATAGAACATTAAGAACTGACCATCCAAAATTTTGGTGGATCTTCAGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

mRNA sequence

ATGGCGATTGCATCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Coding sequence (CDS)

ATGGCGATTGCATCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Protein sequence

MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKHQRKWKSDPNYTKSWYNRGEKGFQASKRLMFQTMHNRVLSVFYWWKENRPVVLYVSFNPS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11802.1Spo11802.1mRNA


Homology
[Close]
BLAST of Spo11802.1 vs. NCBI nr
Match: gi|731336505|ref|XP_010679298.1| (PREDICTED: pre-mRNA-splicing factor SLU7-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.8 bits (460), Expect = 7.300e-43
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90
[Close]
BLAST of Spo11802.1 vs. NCBI nr
Match: gi|902186634|gb|KNA10745.1| (hypothetical protein SOVF_141540, partial [Spinacia oleracea])

HSP 1 Score: 176.0 bits (445), Expect = 4.000e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEK 85
          SLKHQRKWKSDPNYTKSWYNRGEK
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEK 84
[Close]
BLAST of Spo11802.1 vs. NCBI nr
Match: gi|902228730|gb|KNA21247.1| (hypothetical protein SOVF_045230 [Spinacia oleracea])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-40
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87
[Close]
BLAST of Spo11802.1 vs. NCBI nr
Match: gi|729447974|ref|XP_010522579.1| (PREDICTED: pre-mRNA-splicing factor SLU7-A [Tarenaya hassleriana])

HSP 1 Score: 171.4 bits (433), Expect = 9.800e-40
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQADK 90
[Close]
BLAST of Spo11802.1 vs. NCBI nr
Match: gi|297841113|ref|XP_002888438.1| (Pre-mRNA-splicing factor SLU7-A [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 171.4 bits (433), Expect = 9.800e-40
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo11802.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121130 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.100e-43
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90
[Close]
BLAST of Spo11802.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU18_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141540 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEK 85
          SLKHQRKWKSDPNYTKSWYNRGEK
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEK 84
[Close]
BLAST of Spo11802.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045230 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.100e-41
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87
[Close]
BLAST of Spo11802.1 vs. UniProtKB/TrEMBL
Match: A0A087HKT1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G032600 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.800e-40
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS+KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSDKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKW+SDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWRSDPNYTKSWYDRGAKTFQAEK 90
[Close]
BLAST of Spo11802.1 vs. UniProtKB/TrEMBL
Match: D7KSF4_ARALL (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475672 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.800e-40
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo11802.1 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.100e-42
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo11802.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.800e-41
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASV+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90
[Close]
BLAST of Spo11802.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 6.800e-41
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASV+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90
[Close]
BLAST of Spo11802.1 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 1.400e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90
[Close]
BLAST of Spo11802.1 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.900e-20
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1 

		  

Query: 9  KSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKHQRKW 68
          K+R++++K+ EL+EARKAG APAE+DE+GKEINPHIP+Y+  APWYLN+NKPSLKHQR  
Sbjct: 9  KTRDEYKKEKELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQR-G 68

Query: 69 KSDPNYTKSWYNRGEKGFQASKR 92
           +     K WY RG    +A+ +
Sbjct: 69 VTKKEMDKGWYLRGATTGEAATK 90
[Close]
BLAST of Spo11802.1 vs. TAIR (Arabidopsis)
Match: AT1G65660.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 171.4 bits (433), Expect = 3.500e-43
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo11802.1 vs. TAIR (Arabidopsis)
Match: AT4G37120.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 143.7 bits (361), Expect = 7.700e-35
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90
[Close]
BLAST of Spo11802.1 vs. TAIR (Arabidopsis)
Match: AT3G45950.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 124.8 bits (312), Expect = 3.700e-29
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = 1 

		  

Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          MA ASVAFKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++  P Y  S KP
Sbjct: 1  MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK+ P  T S+Y+RG K +QA K
Sbjct: 61 SLKHQKNWKTKPVSTTSYYDRGAKTYQAEK 90
The following BLAST results are available for this feature:
BLAST of Spo11802.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731336505|ref|XP_010679298.1|7.3e-4396.6PREDICTED: pre-mRNA-splicing f... [more]
gi|902186634|gb|KNA10745.1|4.0e-41100.hypothetical protein SOVF_1415... [more]
gi|902228730|gb|KNA21247.1|1.2e-4095.4hypothetical protein SOVF_0452... [more]
gi|729447974|ref|XP_010522579.1|9.8e-4092.2PREDICTED: pre-mRNA-splicing f... [more]
gi|297841113|ref|XP_002888438.1|9.8e-4092.2Pre-mRNA-splicing factor SLU7-... [more]
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BLAST of Spo11802.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8CCG5_BETVU5.1e-4396.6Uncharacterized protein OS=Bet... [more]
A0A0K9QU18_SPIOL2.8e-41100.Uncharacterized protein (Fragm... [more]
A0A0K9RQY9_SPIOL8.1e-4195.4Uncharacterized protein OS=Spi... [more]
A0A087HKT1_ARAAL6.8e-4091.1Uncharacterized protein OS=Ara... [more]
D7KSF4_ARALL6.8e-4092.2Pre-mRNA-splicing factor SLU7-... [more]
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BLAST of Spo11802.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SLU7A_ARATH6.1e-4292.2Pre-mRNA-splicing factor SLU7-... [more]
SLU7_ORYSJ6.8e-4188.8Pre-mRNA-splicing factor SLU7 ... [more]
SLU7_ORYSI6.8e-4188.8Pre-mRNA-splicing factor SLU7 ... [more]
SLU7B_ARATH1.4e-3375.5Pre-mRNA-splicing factor SLU7-... [more]
SLU7_DICDI3.9e-2057.8Pre-mRNA-splicing factor slu7 ... [more]
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BLAST of Spo11802.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G65660.13.5e-4392.2Pre-mRNA splicing Prp18-intera... [more]
AT4G37120.17.7e-3575.5Pre-mRNA splicing Prp18-intera... [more]
AT3G45950.13.7e-2970.0Pre-mRNA splicing Prp18-intera... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12942STEP II SPLICING FACTOR SLU7coord: 1..90
score: 2.7
NoneNo IPR availablePANTHERPTHR12942:SF2PRE-MRNA-SPLICING FACTOR SLU7coord: 1..90
score: 2.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051276 chromosome organization
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010150 leaf senescence
biological_process GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0001736 establishment of planar polarity
biological_process GO:0051301 cell division
biological_process GO:0050832 defense response to fungus
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010351 lithium ion transport
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006486 protein glycosylation
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0052544 defense response by callose deposition in cell wall
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0006397 mRNA processing
biological_process GO:0048825 cotyledon development
biological_process GO:0006869 lipid transport
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0009926 auxin polar transport
biological_process GO:0009789 positive regulation of abscisic acid-activated signaling pathway
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0009651 response to salt stress
biological_process GO:0002237 response to molecule of bacterial origin
biological_process GO:0009408 response to heat
biological_process GO:0006897 endocytosis
biological_process GO:0006886 intracellular protein transport
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0009734 auxin-activated signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
cellular_component GO:0009507 chloroplast
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0000785 chromatin
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005829 cytosol
cellular_component GO:0030132 clathrin coat of coated pit
molecular_function GO:0005215 transporter activity
molecular_function GO:0000386 second spliceosomal transesterification activity
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005488 binding
RNA-Seq Expression