Spo11871 (gene)

Overview
NameSpo11871
Typegene
OrganismSpinacia oleracea (Spinach)
Description(BnaC09g16480D protein) (BnaC09g26880D protein) (BnaC09g29120D protein) (BnaUnng00820D protein)
LocationSpoScf_02809 : 31445 .. 31729 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCTCTTGGAATCCTAAATAGAATCTTAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCNGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGCGCACTCATCTTGGGGTGGGCTTACTACTTAG

mRNA sequence

ATGGTATCTCTTGGAATCCTAAATAGAATCTTAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCNGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGCGCACTCATCTTGGGGTGGGCTTACTACTTAG

Coding sequence (CDS)

ATGGTATCTCTTGGAATCCTAAATAGAATCTTAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCNGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGCGCACTCATCTTGGGGTGGGCTTACTACTTAG

Protein sequence

MVSLGILNRILNGSSRRDLLFPNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALIXQRTRRCLSCAIGGSGEVGIGAHSSWGGLTT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11871.1Spo11871.1mRNA


Homology
[Close]
BLAST of Spo11871.1 vs. NCBI nr
Match: gi|1012332556|gb|KYP43983.1| (Uncharacterized protein ORF91 [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 4.000e-9
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 

		  

Query: 7   LNRILNGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
           ++RI+NGSSRRDLL    NF RST          G+ENPSL +LCYRRLWGSRNRRALI
Sbjct: 198 IDRIINGSSRRDLLLNSQNFFRST--------PAGAENPSLSRLCYRRLWGSRNRRALI 248
[Close]
BLAST of Spo11871.1 vs. NCBI nr
Match: gi|703131006|ref|XP_010104774.1| (hypothetical protein L484_018827 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 3.400e-8
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 

		  

Query: 10 ILNGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          ++NGSSRRDLL    NFC ST          G+ENPSL  LCYRRLWGSRNRRALI
Sbjct: 1  MINGSSRRDLLLNSQNFCHST--------PAGAENPSLSWLCYRRLWGSRNRRALI 48
[Close]
BLAST of Spo11871.1 vs. NCBI nr
Match: gi|700206001|gb|KGN61120.1| (hypothetical protein Csa_2G055570 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.400e-8
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 1 

		  

Query: 12 NGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          NGSSRRDLL    NFCRS           G+ENPSL +LCYRRLWGSRNRRALI
Sbjct: 3  NGSSRRDLLLNSQNFCRSI--------PAGAENPSLSRLCYRRLWGSRNRRALI 48
[Close]
BLAST of Spo11871.1 vs. NCBI nr
Match: gi|1021039922|gb|KZM97703.1| (hypothetical protein DCAR_014935 [Daucus carota subsp. sativus])

HSP 1 Score: 65.9 bits (159), Expect = 4.400e-8
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 

		  

Query: 10 ILNGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          ++NGSSRRDLL    NFCRS           G+ENPSL  LCYRRLWGSRNRRALI
Sbjct: 1  MINGSSRRDLLLNSQNFCRSI--------PAGAENPSLSWLCYRRLWGSRNRRALI 48
[Close]
BLAST of Spo11871.1 vs. NCBI nr
Match: gi|675895250|ref|YP_009049724.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 65.5 bits (158), Expect = 5.800e-8
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 

		  

Query: 10 ILNGSSRRDLLF---PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          ++NGSSRRDLL     NFCRS           G+ENPSL +LCYR+LWGSRNRRALI
Sbjct: 43 MINGSSRRDLLLNSQKNFCRSI--------PAGAENPSLSRLCYRKLWGSRNRRALI 91
[Close]
BLAST of Spo11871.1 vs. UniProtKB/TrEMBL
Match: A0A151RNA8_CAJCA (Uncharacterized protein ORF91 OS=Cajanus cajan GN=KK1_034567 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.800e-9
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 

		  

Query: 7   LNRILNGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
           ++RI+NGSSRRDLL    NF RST          G+ENPSL +LCYRRLWGSRNRRALI
Sbjct: 198 IDRIINGSSRRDLLLNSQNFFRST--------PAGAENPSLSRLCYRRLWGSRNRRALI 248
[Close]
BLAST of Spo11871.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LGR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055570 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-8
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 1 

		  

Query: 12 NGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          NGSSRRDLL    NFCRS           G+ENPSL +LCYRRLWGSRNRRALI
Sbjct: 3  NGSSRRDLLLNSQNFCRSI--------PAGAENPSLSRLCYRRLWGSRNRRALI 48
[Close]
BLAST of Spo11871.1 vs. UniProtKB/TrEMBL
Match: W9RPF7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018827 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-8
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 

		  

Query: 10 ILNGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          ++NGSSRRDLL    NFC ST          G+ENPSL  LCYRRLWGSRNRRALI
Sbjct: 1  MINGSSRRDLLLNSQNFCHST--------PAGAENPSLSWLCYRRLWGSRNRRALI 48
[Close]
BLAST of Spo11871.1 vs. UniProtKB/TrEMBL
Match: A0A165WVC1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014935 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.100e-8
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 

		  

Query: 10 ILNGSSRRDLLF--PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          ++NGSSRRDLL    NFCRS           G+ENPSL  LCYRRLWGSRNRRALI
Sbjct: 1  MINGSSRRDLLLNSQNFCRSI--------PAGAENPSLSWLCYRRLWGSRNRRALI 48
[Close]
BLAST of Spo11871.1 vs. UniProtKB/TrEMBL
Match: M1D939_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034831 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.000e-8
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 

		  

Query: 10 ILNGSSRRDLLF---PNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALI 64
          ++NGSSRRDLL     NFCRS           G+ENPSL +LCYR+LWGSRNRRALI
Sbjct: 43 MINGSSRRDLLLNSQKNFCRSI--------PAGAENPSLSRLCYRKLWGSRNRRALI 91
The following BLAST results are available for this feature:
BLAST of Spo11871.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1012332556|gb|KYP43983.1|4.0e-964.4Uncharacterized protein ORF91 ... [more]
gi|703131006|ref|XP_010104774.1|3.4e-864.2hypothetical protein L484_0188... [more]
gi|700206001|gb|KGN61120.1|3.4e-866.6hypothetical protein Csa_2G055... [more]
gi|1021039922|gb|KZM97703.1|4.4e-864.2hypothetical protein DCAR_0149... [more]
gi|675895250|ref|YP_009049724.1|5.8e-861.4hypothetical protein (mitochon... [more]
back to top
BLAST of Spo11871.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A151RNA8_CAJCA2.8e-964.4Uncharacterized protein ORF91 ... [more]
A0A0A0LGR1_CUCSA2.4e-866.6Uncharacterized protein OS=Cuc... [more]
W9RPF7_9ROSA2.4e-864.2Uncharacterized protein OS=Mor... [more]
A0A165WVC1_DAUCA3.1e-864.2Uncharacterized protein OS=Dau... [more]
M1D939_SOLTU4.0e-861.4Uncharacterized protein OS=Sol... [more]
back to top
BLAST of Spo11871.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo11871.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009522 photosystem I
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression