Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACTTCTGAGAAGAGGACGCTGCGAATCAACCAGGTTTTCTTGTTTTTGTTCCTCTTCTGGTATGTTTGTGATGGGTTTTATTTGCCTGGGACTTACATGCATACATACTCCAATGATGATGAAATATATGCGAAAGTGAATTCACTGACATCTATTGAGACTGAGCTTCCCTTTAGCTACTACAGTCTTCCGTATTGTAAGCCACATGATGGGGTCAAGAAAAGTGCGGAGAATCTCGGAGAGCTGCTCATGGGGGATCAGATTGACAACTCCCCTTACCGTTTTCGGATGAATAAGAATGAGTCTGTTTTCCTGTGTATTACTAGTCCTCTGAATGAAGAGCAGGTAAAACTTTTGAAACAGAGAACTCGCGATCTATATCAGGTGAACATGATTTTGGATAATCTCCCTGCAATGAGGTTTGCAAACCAAAACGGTGTAAAGATCCAATGGACTGGATTTCCTATTGGTTATTCTCCAGCTAACAGTAACGATGATTACATTATAAATCATCTAAAATTCAAGGTTTTGATTCATGAGTACGAAGGGAGTACTGTGGAGATCATTGGTACAGGAGAGGAAGGTATGGGAGTGATCTCAGAAGCAGACAAGAAAAAGACATCTGGTTATGAGATAGTGGGTTTTGAGGTTGTTCCCTGCAGCGTCAAGCGCGATCCTGAAGAAATGTCAAAACTTCACATGTATGACAATATTAATTCGATCAACTGCCCTGGGGATCTTGAAAGGTCTCAAATCATAAGAGAACAAGAGAAAGTTGCATTTACTTACGAGGTTGAGTTTGTAAAGAGTAATACTAGATGGCCATCTAGATGGGATGCTTACCTGAAAATGGAAGGTGCCCGAGTGCATTGGTTCTCTATTTTGAATTCCCTCATGGTGATCTTTTTCTTGGCTGGAATAGTGTTTGTAATATTTTTAAGAACTGTAAGAAGAGATTTGACCAGATATGAGGAACTGGACAAAGAAGCTCAAGCGCAGATGAACGAGGAGCTGTCAGGATGGAAGCTTGTTGTGGGTGATGTGTTTAGAGAACCAGACCATGCTAAGCTATTATGTGTGATGGTTGGAGATGGTGTTCAGATTACAGGAATGGCTGGTGTGACTATAGTCTTTGCAGCTCTTGGTTTCATGTCACCTGCGTCTAGGGGAATGCTTTTAACAGGGATGATAATTCTCTACCTTATGCTGGGTACTCTTGCTGGCTATGCTGGTGTATATCTCTGGAAAACTATCAAGGGAAATACAGATGGTTGGAGGTCAGTTGCCTGGTGGAATGCTTGCTTTTTTCCTGGGGTTGTCTTTGTCATCCTCACCATGTTGAATTTCCTCCTTTGGGGGAGCAAGAGTACTGGTGCAATACCAATATCTTTGTATTTTATCCTTCTCTCCCTCTGGTTCTGCATTTCAGTGCCCCTGACTCTGTTTGGAGGTTTTCTTGGAACTCGAGCTGAGCCTATTCAGTTTCCTGTGCGAACCAATCAAATCCCCAGAGAGATTCCTGCTCGAAAATACCCTTCATGGTTGCTTGTTCTTGGTGCTGGTACCCTTCCATTTGGAACCCTGTTTATCGAGCTCTTCTTCATTTTGTCCAGCATTTGGCTGGGAAGGTTCTACTATGTCTTTGGTTTCTTGTTTGTTGTCCTCTTGTTGCTGGTGATTGTTTGTGCTGAAGTTTCTGTTGTTCTGACATACATGCATCTATGTGTTGAAGATTGGCGATGGTGGTGGAAAGCATTCTTTGCTTCGGGTTCTGTTTCTCTTTATGTCTTCCTTTACTCCATTAATTACTTGGTTTTTGACCTTCAGAGTCTCAGTGGACCTGTGTCGGCTCTACTCTATCTAGGGTATTCCTTGATAATGGCGGTGGCAATTATGCTATCTACCGGCACTATAGGATTCCTAATGTCATTCTACTTTGTCCACTATCTGTTTTCATCAGTAAAGATTGATTAA ATGGCTACTTCTGAGAAGAGGACGCTGCGAATCAACCAGGTTTTCTTGTTTTTGTTCCTCTTCTGGTATGTTTGTGATGGGTTTTATTTGCCTGGGACTTACATGCATACATACTCCAATGATGATGAAATATATGCGAAAGTGAATTCACTGACATCTATTGAGACTGAGCTTCCCTTTAGCTACTACAGTCTTCCGTATTGTAAGCCACATGATGGGGTCAAGAAAAGTGCGGAGAATCTCGGAGAGCTGCTCATGGGGGATCAGATTGACAACTCCCCTTACCGTTTTCGGATGAATAAGAATGAGTCTGTTTTCCTGTGTATTACTAGTCCTCTGAATGAAGAGCAGGTAAAACTTTTGAAACAGAGAACTCGCGATCTATATCAGGTGAACATGATTTTGGATAATCTCCCTGCAATGAGGTTTGCAAACCAAAACGGTGTAAAGATCCAATGGACTGGATTTCCTATTGGTTATTCTCCAGCTAACAGTAACGATGATTACATTATAAATCATCTAAAATTCAAGGTTTTGATTCATGAGTACGAAGGGAGTACTGTGGAGATCATTGGTACAGGAGAGGAAGGTATGGGAGTGATCTCAGAAGCAGACAAGAAAAAGACATCTGGTTATGAGATAGTGGGTTTTGAGGTTGTTCCCTGCAGCGTCAAGCGCGATCCTGAAGAAATGTCAAAACTTCACATGTATGACAATATTAATTCGATCAACTGCCCTGGGGATCTTGAAAGGTCTCAAATCATAAGAGAACAAGAGAAAGTTGCATTTACTTACGAGGTTGAGTTTGTAAAGAGTAATACTAGATGGCCATCTAGATGGGATGCTTACCTGAAAATGGAAGGTGCCCGAGTGCATTGGTTCTCTATTTTGAATTCCCTCATGGTGATCTTTTTCTTGGCTGGAATAGTGTTTGTAATATTTTTAAGAACTGTAAGAAGAGATTTGACCAGATATGAGGAACTGGACAAAGAAGCTCAAGCGCAGATGAACGAGGAGCTGTCAGGATGGAAGCTTGTTGTGGGTGATGTGTTTAGAGAACCAGACCATGCTAAGCTATTATGTGTGATGGTTGGAGATGGTGTTCAGATTACAGGAATGGCTGGTGTGACTATAGTCTTTGCAGCTCTTGGTTTCATGTCACCTGCGTCTAGGGGAATGCTTTTAACAGGGATGATAATTCTCTACCTTATGCTGGGTACTCTTGCTGGCTATGCTGGTGTATATCTCTGGAAAACTATCAAGGGAAATACAGATGGTTGGAGGTCAGTTGCCTGGTGGAATGCTTGCTTTTTTCCTGGGGTTGTCTTTGTCATCCTCACCATGTTGAATTTCCTCCTTTGGGGGAGCAAGAGTACTGGTGCAATACCAATATCTTTGTATTTTATCCTTCTCTCCCTCTGGTTCTGCATTTCAGTGCCCCTGACTCTGTTTGGAGGTTTTCTTGGAACTCGAGCTGAGCCTATTCAGTTTCCTGTGCGAACCAATCAAATCCCCAGAGAGATTCCTGCTCGAAAATACCCTTCATGGTTGCTTGTTCTTGGTGCTGGTACCCTTCCATTTGGAACCCTGTTTATCGAGCTCTTCTTCATTTTGTCCAGCATTTGGCTGGGAAGGTTCTACTATGTCTTTGGTTTCTTGTTTGTTGTCCTCTTGTTGCTGGTGATTGTTTGTGCTGAAGTTTCTGTTGTTCTGACATACATGCATCTATGTGTTGAAGATTGGCGATGGTGGTGGAAAGCATTCTTTGCTTCGGGTTCTGTTTCTCTTTATGTCTTCCTTTACTCCATTAATTACTTGGTTTTTGACCTTCAGAGTCTCAGTGGACCTGTGTCGGCTCTACTCTATCTAGGGTATTCCTTGATAATGGCGGTGGCAATTATGCTATCTACCGGCACTATAGGATTCCTAATGTCATTCTACTTTGTCCACTATCTGTTTTCATCAGTAAAGATTGATTAA ATGGCTACTTCTGAGAAGAGGACGCTGCGAATCAACCAGGTTTTCTTGTTTTTGTTCCTCTTCTGGTATGTTTGTGATGGGTTTTATTTGCCTGGGACTTACATGCATACATACTCCAATGATGATGAAATATATGCGAAAGTGAATTCACTGACATCTATTGAGACTGAGCTTCCCTTTAGCTACTACAGTCTTCCGTATTGTAAGCCACATGATGGGGTCAAGAAAAGTGCGGAGAATCTCGGAGAGCTGCTCATGGGGGATCAGATTGACAACTCCCCTTACCGTTTTCGGATGAATAAGAATGAGTCTGTTTTCCTGTGTATTACTAGTCCTCTGAATGAAGAGCAGGTAAAACTTTTGAAACAGAGAACTCGCGATCTATATCAGGTGAACATGATTTTGGATAATCTCCCTGCAATGAGGTTTGCAAACCAAAACGGTGTAAAGATCCAATGGACTGGATTTCCTATTGGTTATTCTCCAGCTAACAGTAACGATGATTACATTATAAATCATCTAAAATTCAAGGTTTTGATTCATGAGTACGAAGGGAGTACTGTGGAGATCATTGGTACAGGAGAGGAAGGTATGGGAGTGATCTCAGAAGCAGACAAGAAAAAGACATCTGGTTATGAGATAGTGGGTTTTGAGGTTGTTCCCTGCAGCGTCAAGCGCGATCCTGAAGAAATGTCAAAACTTCACATGTATGACAATATTAATTCGATCAACTGCCCTGGGGATCTTGAAAGGTCTCAAATCATAAGAGAACAAGAGAAAGTTGCATTTACTTACGAGGTTGAGTTTGTAAAGAGTAATACTAGATGGCCATCTAGATGGGATGCTTACCTGAAAATGGAAGGTGCCCGAGTGCATTGGTTCTCTATTTTGAATTCCCTCATGGTGATCTTTTTCTTGGCTGGAATAGTGTTTGTAATATTTTTAAGAACTGTAAGAAGAGATTTGACCAGATATGAGGAACTGGACAAAGAAGCTCAAGCGCAGATGAACGAGGAGCTGTCAGGATGGAAGCTTGTTGTGGGTGATGTGTTTAGAGAACCAGACCATGCTAAGCTATTATGTGTGATGGTTGGAGATGGTGTTCAGATTACAGGAATGGCTGGTGTGACTATAGTCTTTGCAGCTCTTGGTTTCATGTCACCTGCGTCTAGGGGAATGCTTTTAACAGGGATGATAATTCTCTACCTTATGCTGGGTACTCTTGCTGGCTATGCTGGTGTATATCTCTGGAAAACTATCAAGGGAAATACAGATGGTTGGAGGTCAGTTGCCTGGTGGAATGCTTGCTTTTTTCCTGGGGTTGTCTTTGTCATCCTCACCATGTTGAATTTCCTCCTTTGGGGGAGCAAGAGTACTGGTGCAATACCAATATCTTTGTATTTTATCCTTCTCTCCCTCTGGTTCTGCATTTCAGTGCCCCTGACTCTGTTTGGAGGTTTTCTTGGAACTCGAGCTGAGCCTATTCAGTTTCCTGTGCGAACCAATCAAATCCCCAGAGAGATTCCTGCTCGAAAATACCCTTCATGGTTGCTTGTTCTTGGTGCTGGTACCCTTCCATTTGGAACCCTGTTTATCGAGCTCTTCTTCATTTTGTCCAGCATTTGGCTGGGAAGGTTCTACTATGTCTTTGGTTTCTTGTTTGTTGTCCTCTTGTTGCTGGTGATTGTTTGTGCTGAAGTTTCTGTTGTTCTGACATACATGCATCTATGTGTTGAAGATTGGCGATGGTGGTGGAAAGCATTCTTTGCTTCGGGTTCTGTTTCTCTTTATGTCTTCCTTTACTCCATTAATTACTTGGTTTTTGACCTTCAGAGTCTCAGTGGACCTGTGTCGGCTCTACTCTATCTAGGGTATTCCTTGATAATGGCGGTGGCAATTATGCTATCTACCGGCACTATAGGATTCCTAATGTCATTCTACTTTGTCCACTATCTGTTTTCATCAGTAAAGATTGATTAA MATSEKRTLRINQVFLFLFLFWYVCDGFYLPGTYMHTYSNDDEIYAKVNSLTSIETELPFSYYSLPYCKPHDGVKKSAENLGELLMGDQIDNSPYRFRMNKNESVFLCITSPLNEEQVKLLKQRTRDLYQVNMILDNLPAMRFANQNGVKIQWTGFPIGYSPANSNDDYIINHLKFKVLIHEYEGSTVEIIGTGEEGMGVISEADKKKTSGYEIVGFEVVPCSVKRDPEEMSKLHMYDNINSINCPGDLERSQIIREQEKVAFTYEVEFVKSNTRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHAKLLCVMVGDGVQITGMAGVTIVFAALGFMSPASRGMLLTGMIILYLMLGTLAGYAGVYLWKTIKGNTDGWRSVAWWNACFFPGVVFVILTMLNFLLWGSKSTGAIPISLYFILLSLWFCISVPLTLFGGFLGTRAEPIQFPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLFVVLLLLVIVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVSLYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLSTGTIGFLMSFYFVHYLFSSVKID Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11898.1 vs. NCBI nr
Match: gi|902206529|gb|KNA15496.1| (hypothetical protein SOVF_097760 [Spinacia oleracea]) HSP 1 Score: 1317.4 bits (3408), Expect = 0.000e+0 Identity = 659/659 (100.00%), Postives = 659/659 (100.00%), Query Frame = 1
BLAST of Spo11898.1 vs. NCBI nr
Match: gi|731356102|ref|XP_010689494.1| (PREDICTED: transmembrane 9 superfamily member 12 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 1236.9 bits (3199), Expect = 0.000e+0 Identity = 612/659 (92.87%), Postives = 642/659 (97.42%), Query Frame = 1
BLAST of Spo11898.1 vs. NCBI nr
Match: gi|641832015|gb|KDO51059.1| (hypothetical protein CISIN_1g006214mg [Citrus sinensis]) HSP 1 Score: 1142.1 bits (2953), Expect = 0.000e+0 Identity = 564/645 (87.44%), Postives = 603/645 (93.49%), Query Frame = 1
BLAST of Spo11898.1 vs. NCBI nr
Match: gi|823126926|ref|XP_012491763.1| (PREDICTED: transmembrane 9 superfamily member 12 [Gossypium raimondii]) HSP 1 Score: 1139.8 bits (2947), Expect = 0.000e+0 Identity = 564/659 (85.58%), Postives = 610/659 (92.56%), Query Frame = 1
BLAST of Spo11898.1 vs. NCBI nr
Match: gi|802545802|ref|XP_012084017.1| (PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]) HSP 1 Score: 1139.0 bits (2945), Expect = 0.000e+0 Identity = 566/656 (86.28%), Postives = 607/656 (92.53%), Query Frame = 1
BLAST of Spo11898.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7M1_SPIOL (Transmembrane 9 superfamily member OS=Spinacia oleracea GN=SOVF_097760 PE=3 SV=1) HSP 1 Score: 1317.4 bits (3408), Expect = 0.000e+0 Identity = 659/659 (100.00%), Postives = 659/659 (100.00%), Query Frame = 1
BLAST of Spo11898.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BL44_BETVU (Transmembrane 9 superfamily member OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g207680 PE=3 SV=1) HSP 1 Score: 1236.9 bits (3199), Expect = 0.000e+0 Identity = 612/659 (92.87%), Postives = 642/659 (97.42%), Query Frame = 1
BLAST of Spo11898.1 vs. UniProtKB/TrEMBL
Match: A0A067E771_CITSI (Transmembrane 9 superfamily member OS=Citrus sinensis GN=CISIN_1g006214mg PE=3 SV=1) HSP 1 Score: 1142.1 bits (2953), Expect = 0.000e+0 Identity = 564/645 (87.44%), Postives = 603/645 (93.49%), Query Frame = 1
BLAST of Spo11898.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PVF3_GOSRA (Transmembrane 9 superfamily member OS=Gossypium raimondii GN=B456_001G225600 PE=3 SV=1) HSP 1 Score: 1139.8 bits (2947), Expect = 0.000e+0 Identity = 564/659 (85.58%), Postives = 610/659 (92.56%), Query Frame = 1
BLAST of Spo11898.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NIZ3_GOSAR (Transmembrane 9 superfamily member OS=Gossypium arboreum GN=F383_17314 PE=3 SV=1) HSP 1 Score: 1137.9 bits (2942), Expect = 0.000e+0 Identity = 562/659 (85.28%), Postives = 610/659 (92.56%), Query Frame = 1
BLAST of Spo11898.1 vs. ExPASy Swiss-Prot
Match: TMN12_ARATH (Transmembrane 9 superfamily member 12 OS=Arabidopsis thaliana GN=TMN12 PE=2 SV=1) HSP 1 Score: 1114.4 bits (2881), Expect = 0.000e+0 Identity = 545/649 (83.98%), Postives = 602/649 (92.76%), Query Frame = 1
BLAST of Spo11898.1 vs. ExPASy Swiss-Prot
Match: TMN11_ARATH (Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana GN=TMN11 PE=2 SV=1) HSP 1 Score: 872.8 bits (2254), Expect = 2.300e-252 Identity = 443/640 (69.22%), Postives = 522/640 (81.56%), Query Frame = 1
BLAST of Spo11898.1 vs. ExPASy Swiss-Prot
Match: TMN10_ARATH (Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana GN=TMN10 PE=2 SV=1) HSP 1 Score: 510.0 bits (1312), Expect = 3.900e-143 Identity = 282/647 (43.59%), Postives = 408/647 (63.06%), Query Frame = 1
BLAST of Spo11898.1 vs. ExPASy Swiss-Prot
Match: TMN9_ARATH (Transmembrane 9 superfamily member 9 OS=Arabidopsis thaliana GN=TMN9 PE=2 SV=1) HSP 1 Score: 508.8 bits (1309), Expect = 8.700e-143 Identity = 290/673 (43.09%), Postives = 414/673 (61.52%), Query Frame = 1
BLAST of Spo11898.1 vs. ExPASy Swiss-Prot
Match: TMN8_ARATH (Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1) HSP 1 Score: 506.9 bits (1304), Expect = 3.300e-142 Identity = 286/661 (43.27%), Postives = 408/661 (61.72%), Query Frame = 1
BLAST of Spo11898.1 vs. TAIR (Arabidopsis)
Match: AT4G12650.1 (Endomembrane protein 70 protein family) HSP 1 Score: 1114.4 bits (2881), Expect = 0.000e+0 Identity = 545/649 (83.98%), Postives = 602/649 (92.76%), Query Frame = 1
BLAST of Spo11898.1 vs. TAIR (Arabidopsis)
Match: AT5G35160.2 (Endomembrane protein 70 protein family) HSP 1 Score: 872.8 bits (2254), Expect = 1.300e-253 Identity = 443/640 (69.22%), Postives = 522/640 (81.56%), Query Frame = 1
BLAST of Spo11898.1 vs. TAIR (Arabidopsis)
Match: AT2G24170.1 (Endomembrane protein 70 protein family) HSP 1 Score: 510.0 bits (1312), Expect = 2.200e-144 Identity = 282/647 (43.59%), Postives = 408/647 (63.06%), Query Frame = 1
BLAST of Spo11898.1 vs. TAIR (Arabidopsis)
Match: AT5G10840.1 (Endomembrane protein 70 protein family) HSP 1 Score: 506.9 bits (1304), Expect = 1.900e-143 Identity = 286/661 (43.27%), Postives = 408/661 (61.72%), Query Frame = 1
BLAST of Spo11898.1 vs. TAIR (Arabidopsis)
Match: AT5G25100.2 (Endomembrane protein 70 protein family) HSP 1 Score: 504.6 bits (1298), Expect = 9.200e-143 Identity = 291/680 (42.79%), Postives = 415/680 (61.03%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11898.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo11898.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo11898.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo11898.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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