Spo11902 (gene) | SpinachBase

Overview


Name	Spo11902
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	PPDK regulatory protein, putative isoform 2
Location	chr6 : 2225416 .. 2226808 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCCGCGACCAGGTTCAGTCTCCCAAACCCGACCCCACCTGAACACAAACCTCCGATTCCAACAATATCTCTCTCCTCCGAACCTCCCTCCAAACCCCAGCCTCGGAAACTAAAGGGAAGCGCGAAGCTAAACCTCTGGTCCAGAGCTCGGTCAATACGGTCCGGTCGGAAATTAGAGCGCCCGGCTGAAATTCCGGCCAAGGCGGCGACTCTGGTTGAGAAACCTCTGGTACGAACCGGCGACGCTGTTTCCGATTCTGATAAAGAAGATGACGGCGAAATTAGGGAGGGTAAGTCGATTTATATGGTCTCTGACGGAACTGGATGGACGGCGGAGCATTCCGTTAGCGCGGCGTTAGGGCAGTTTGACCATTGCTTAGTTGATCATGGTTGTTCAGTTAGTACTCACTTGTTTTCTGGGGTAAGTTTGCAAATTTATTCATGTTATTAGTATAATTGTTAGTTCTCATTGAATTAGATTTACTTCCTTTATTTTTAAGTTTTCAATTATCATAATTTGTATTTCTTAGTTGTTTCGATTAGTTTAATTGCTGAAAATTTCATTGATTTTGGTCTGAAATTAAGTGGTGAACATATGTTTGTGGAAGTATCAGGCGTGTACTTTGTTGAGAGCCACAACTTTAATTTTAGAGTTACTATTATTCACATTACTTATATTAGAATTTGTATAAATTTGAGAGGTAAATGTTGAGAATGATTCTCATCCCCTATATATTTAGTTACAAAGAAGCTATAAATGTAAGATGCTTATTTCATTATTGAAGTGTGTAAAAAAAAAAGAAGAAAAGGGAGAGAAAATAAGAGATAAAATAAAGGAGATATAAAGGAGGAAAAGTTTTATATTGAAAAACATATATATATATAGAAATATTTTTTTGTTATCTTGGGTTGTAACCCATATTTGTTTCTCCTTTTTATAATCCTTAATGCTATGTTTGGATATGAGGATTTCATTTGAAATCCCGGAATTGAGTCAATTCCACTGTTTGGATGATTTAGAATTTGAAATTCAGAATTGACCCAAATTCTAAAACAGCCAAGGAGAGCCCATCAAAATAGGGATTTGAAATTACAAGTTAAACTATGTCATTTGAAATTCTCAGCCCATAGCCCATTGCCAACAACTTAAGCGTTTATTTTTTCTCTCTCCTCCCACACAGCTTCCTTTGACATTTTTTTATCTCTCTCTCCCATGAGACTTTGAGCTTCTCTCTCGCTCCTCCGCCACCTTCCTCCCTTCCGATTCGCTTTTGCTATCTCAACAACCTCTCATGTGTAATTCTCTCTCCTTGATTTCTGCTAATATAGAGCACAAATGCTTCTTCGGAGGCCTTGCAATGGCACCGAACTTTGATCTGAAATTATGA

mRNA sequence

ATGTTAGCCGCGACCAGGTTCAGTCTCCCAAACCCGACCCCACCTGAACACAAACCTCCGATTCCAACAATATCTCTCTCCTCCGAACCTCCCTCCAAACCCCAGCCTCGGAAACTAAAGGGAAGCGCGAAGCTAAACCTCTGGTCCAGAGCTCGGTCAATACGGTCCGGTCGGAAATTAGAGCGCCCGGCTGAAATTCCGGCCAAGGCGGCGACTCTGGTTGAGAAACCTCTGGTACGAACCGGCGACGCTGTTTCCGATTCTGATAAAGAAGATGACGGCGAAATTAGGGAGGACTTTGAGCTTCTCTCTCGCTCCTCCGCCACCTTCCTCCCTTCCGATTCGCTTTTGCTATCTCAACAACCTCTCATGTGTAATTCTCTCTCCTTGATTTCTGCTAATATAGAGCACAAATGCTTCTTCGGAGGCCTTGCAATGGCACCGAACTTTGATCTGAAATTATGA

Coding sequence (CDS)

ATGTTAGCCGCGACCAGGTTCAGTCTCCCAAACCCGACCCCACCTGAACACAAACCTCCGATTCCAACAATATCTCTCTCCTCCGAACCTCCCTCCAAACCCCAGCCTCGGAAACTAAAGGGAAGCGCGAAGCTAAACCTCTGGTCCAGAGCTCGGTCAATACGGTCCGGTCGGAAATTAGAGCGCCCGGCTGAAATTCCGGCCAAGGCGGCGACTCTGGTTGAGAAACCTCTGGTACGAACCGGCGACGCTGTTTCCGATTCTGATAAAGAAGATGACGGCGAAATTAGGGAGGACTTTGAGCTTCTCTCTCGCTCCTCCGCCACCTTCCTCCCTTCCGATTCGCTTTTGCTATCTCAACAACCTCTCATGTGTAATTCTCTCTCCTTGATTTCTGCTAATATAGAGCACAAATGCTTCTTCGGAGGCCTTGCAATGGCACCGAACTTTGATCTGAAATTATGA

Protein sequence

MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKLERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSATFLPSDSLLLSQQPLMCNSLSLISANIEHKCFFGGLAMAPNFDLKL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11902.1	Spo11902.1	mRNA

Homology

[Close]

BLAST of Spo11902.1 vs. NCBI nr
Match: gi|902216793|gb|KNA17527.1| (hypothetical protein SOVF_078970 [Spinacia oleracea])

HSP 1 Score: 188.3 bits (477), Expect = 9.700e-45
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 1


		  
Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL
Sbjct: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
           ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIRE   +   S  T
Sbjct: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREGKSIYMVSDGT 109

[Close]

BLAST of Spo11902.1 vs. NCBI nr
Match: gi|731351311|ref|XP_010686969.1| (PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 112.8 bits (281), Expect = 5.200e-22
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1


		  
Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           + A T FS+ +PTP E K  IPTI LSS+ PS+PQ RK KGSAKLNLWSRARSIRSGRKL
Sbjct: 2   LAATTSFSIRDPTP-EPKLSIPTIYLSSDRPSEPQTRKQKGSAKLNLWSRARSIRSGRKL 61

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
            RP E P +AA  VEK   RTGDAVSDS++EDDGE R+   +   S  T
Sbjct: 62  NRPVENPVQAAVPVEKD--RTGDAVSDSEREDDGETRDGKSIYMVSDGT 107

[Close]

BLAST of Spo11902.1 vs. NCBI nr
Match: gi|731351309|ref|XP_010686968.1| (PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 112.8 bits (281), Expect = 5.200e-22
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1


		  
Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           + A T FS+ +PTP E K  IPTI LSS+ PS+PQ RK KGSAKLNLWSRARSIRSGRKL
Sbjct: 2   LAATTSFSIRDPTP-EPKLSIPTIYLSSDRPSEPQTRKQKGSAKLNLWSRARSIRSGRKL 61

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
            RP E P +AA  VEK   RTGDAVSDS++EDDGE R+   +   S  T
Sbjct: 62  NRPVENPVQAAVPVEKD--RTGDAVSDSEREDDGETRDGKSIYMVSDGT 107

[Close]

BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF69_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078970 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.800e-45
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 1


		  
Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL
Sbjct: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
           ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIRE   +   S  T
Sbjct: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREGKSIYMVSDGT 109

[Close]

BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EM25_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g187290 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.600e-22
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1


		  
Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           + A T FS+ +PTP E K  IPTI LSS+ PS+PQ RK KGSAKLNLWSRARSIRSGRKL
Sbjct: 2   LAATTSFSIRDPTP-EPKLSIPTIYLSSDRPSEPQTRKQKGSAKLNLWSRARSIRSGRKL 61

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
            RP E P +AA  VEK   RTGDAVSDS++EDDGE R+   +   S  T
Sbjct: 62  NRPVENPVQAAVPVEKD--RTGDAVSDSEREDDGETRDGKSIYMVSDGT 107

The following BLAST results are available for this feature:

BLAST of Spo11902.1 vs. NCBI nr
BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
BLAST of Spo11902.1 vs. ExPASy Swiss-Prot
BLAST of Spo11902.1 vs. TAIR (Arabidopsis)

BLAST of Spo11902.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|902216793\|gb\|KNA17527.1\|	9.7e-45	91.7	hypothetical protein SOVF_0789...	[more]
gi\|731351311\|ref\|XP_010686969.1\|	5.2e-22	63.3	PREDICTED: probable pyruvate, ...	[more]
gi\|731351309\|ref\|XP_010686968.1\|	5.2e-22	63.3	PREDICTED: probable pyruvate, ...	[more]

BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2


Match Name	E-value	Identity	Description
A0A0K9RF69_SPIOL	6.8e-45	91.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8EM25_BETVU	3.6e-22	63.3	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo11902.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo11902.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24857	0.76	Barchart \| Table
Spo28058	0.74	Barchart \| Table
Spo25347	0.74	Barchart \| Table
Spo13202	0.72	Barchart \| Table
Spo13029	0.71	Barchart \| Table
Spo14678	0.71	Barchart \| Table
Spo08572	0.69	Barchart \| Table
Spo11733	0.69	Barchart \| Table
Spo13184	0.69	Barchart \| Table
Spo01579	0.68	Barchart \| Table
Spo05073	0.67	Barchart \| Table
Spo06004	0.67	Barchart \| Table
Spo00225	0.67	Barchart \| Table
Spo20946	0.66	Barchart \| Table
Spo23907	0.66	Barchart \| Table
Spo12029	0.66	Barchart \| Table
Spo13614	0.66	Barchart \| Table
Spo18185	0.66	Barchart \| Table
Spo06919	0.66	Barchart \| Table
Spo11213	0.65	Barchart \| Table
Spo26407	0.65	Barchart \| Table
Spo23674	0.65	Barchart \| Table