Spo11929 (gene)

Overview
NameSpo11929
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Locationchr4 : 7913546 .. 7917739 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCAGAAAATGGGATACTCATACTCCGTATATCTTACTCGTAGTAAAATCTGGAAGTTGAAAGAGAGAAGAAGGTTCATCATCATCATTCATGTTCGTTCACACTCGTTCTGCACAATTCCTTCGCCGAGCTATCTCAATTTCAAATTCAAACTCAACATCAATTTCTCTTATTTTTTCTAAAACCCTAAACCCCAATTTCAACAACGCCGTATTTCAATGTTTGATTCGGAAAATCAGCACAACTTCATCGTTGTCATCATCGGCGGCGGCGGAAGGAGTGTGGCGGGACCCTAATAGAATATCAATATGGAGGAGAAAGAAAGAAATTGGGAAAGAAGGTTTAATTGTTGCGAAAGAGTTGAAGCGTCTTCAATCAAACCCTCTTCGTCTTCAACGATGTATTCAATCAAATGTTTCTCGTCTCCTTAAATCTGACCTTGTTTCTGTTCTTGCTGAGTTTCAACGCCAAGACCAAGTATTTCTCTCTATGAAAGTATGCACCTTGCTCTCTCTCTCCTCCATTTTTGGTGTTAAAGTTTGGAGTTTTTGTTGTGGTTTTGTTAAGATAGCTTAATTTGACAGGTTTTTTTTGATGATAATGGTTTATTGGATGTTATTGATTGGTTTAAAGCTATGTATGTTCTCTTTACCTTGTGAAATTTAGCTGCTTCTCCCAAACAAACAGCTAGACTAGAAAAATCTAGTAACTAAAATGTCTAGAAAAATCTAGTAACTAAAGTGTCTAGAATTATCCTAAGAAAAATCTAGATAAATAAGGAGAGTACAAGAATCTAGAAACCAAAATACAACCACTATAAATATGTTGCATTTGCATAAGTTTAGAGGTGAGCCAATCAAAAGAGCTCCCACAACATATGAGGGTAGAAACAAGGGTTCTACCAAAGAGATAAACGAGAGACATGAGCTATCGCAAATACTGTTGTAGAATTCTTATTAATGAAATCATGATGAAAATACAATTTTGTTATATAATTGAGGTCCATCAAAACTTCCGCGTGCGTTCTCAAATTCCTATCATGGTATCGAGCTCAACAAATCCTTGCTAGTAACATCTAGGGTTTGATCGCCGATACATTTGGCCTGAAGATGAAACTCCACCGAGCAATACTCACACTGTCCGTCACCGTCGCAGGCGTCGCGGTCACGCGAAAACCGCATAGCCATGGCACGTTCACTAGTAAAAGGGATGAGGCCGAGGCGGTGAGCGATGAACTCGTCGTTGAGAACAGAAGAGTTAACTTCGATTTCGACAAGATCGACGACGACCGTCGGCACCTCGGCTATCATTACACGGCGGAGAGCGTTAGCCATGCTGGAGTTGGTTTTGCGGAGCTCGAATTTTCATGAAATCGTTACGCATTTCTCTGATTTTGATTTCATGGAAGCGTTGGTAGGATGCTCCCCATTGTTGGGGTTTTCGATTGCAGGGTATGAGGAGAGAGAAATGAGCTGAAACCCTTTACCTTTTCTAGCTATTGCTCTAAGCTTCAACTCTGACCTATTTGCTAATGCCCTTGTCATTAGCAAACTTCAAAATTTGAAGTTCTAACAAAATCTAACAAAATCAGTTTTGATCACCAGAAAATTAGTTCTGATTAGAAAATTCAGTTGGGAAGAGCTAAGCACAATATGATTGTTACAGAATTTGGAAAATTTGTGCTAATATATGGTGGACTGGGTAATCTGTTCATTTCATGAGCTGTTACTCTGTTAGTAGTAAATTGGATGTTTGGTAGGATGCCGATGAATGCTTGCATTTGAAGTGGGTTTGGCATTTCTTCGTGTTTGATTTAGTTAAATGAAGACGTAGAACAATGGTTTATTGTATGTTATTTATATTGGTTTAAGGCTATGTATGTTCTCACCACCTTATAAAATTTAGCTGCACCGCCCCAAAAAGAAGTTGTGATGAGCAGAAATCGATTTCGATAAGCTAAAATCAGTTTTGATTTGGCATTTCATCCTGTTTGATTTAGTTAGGTGAAGACATAGAACAAGTTTTTGTTTGGATCATTGGAGGAATAATGGTAATGGTTTGTTGGGATCCTTAATTTTTTTGGAATGGAGATAGGCGTATACTCGTATAGTGATATAGATGTTGAAATGTGATACCTTTCAAGTGCTCATTATATTTGATTTGCACAAAATATGGTGTGCATGAATATGACGGTTGAAGTGAGTGTAATTCATCTCAGTTTTGAATATGTGGAAGGCCTGAATCGCCTGATTCTATGTCCTTTTATCGGTTTTGGAAATGTGGAAAACACCTTCTTGGTTCCGGACTTCCTATCTCACCTTTAGAAGGGGTGAATTAAAAATAAGAAATGGGCTTGAAAGAAGTTGGGATGAGGGGAGAAAAGTTTCTAAGAAAGGGTTGGATTGAGACTTTGACTGGTCGTTGGACATGTTCCTTGTGGAGAGAGTGTATTGTCATATTTGTATTCACATGGTCTGTTTGGGTTTATAAGCAAATAGTGATAACCATTAGGGGTGCTGTTGTAACTTGTAAGTTAGCCGTAATAATACTGCAGTTTCTATTTCCCCTTTACGACGGGAACTAGGCACCTTCTGTTGTTGGCATATTGCTGTAATTTTTGGTAAGGTAGAAAAGTAATACTTCGTAGTTGTTAGAGCTTAACGAGTGAATTATAGGATGTTCCCCTATTTGGTAATCACTTTTAGCACTGACATTGCTGATGGACTGATGTTTGTAGTTTATTTTCCATCAGAACAGAATGTAAGACAGAACACTACATTTCTCTTTCAACTGCTTCTTTTCTCACAAATACTCTCAGTCTTTCTCTGGTTCTTTTAGCTCCCTCTTGTCGCCTGGTTTTTTCTTGCCTATCCTTACCTCCAAATTCGTCTTCCCTGAAATAACTTTTGGTTTCTTCTCAATTTGTAGTTGTGATTTTTGTTAGGTTGTAACACTTGTTCCAAAGCACAACAACGGATCATGCTTAGGGTTCTCCATATATTTCCTATAATTCAGAGGTCTTTTCTTCGACTTTAAGGGTACGGTACATTTAGCCTTAAATGGGCTGTAAAACACGGGGATTAATAATTTTGGAGAGATGGATCGATTTCCTTGTTAGGTAGGACTGTTGATAGTTAACATGACCTTGATGTTCTTAACATACTGCTTCTGGCATCTCTAATGAAGTTTCTATGGATTCTTCAGTTTGTCGCTACATAGACAAACTTATTTCAGTGCTCATGTGGAGTCCTACACTTATACTTGGTCTTCAACTGGTGTATGGGTTGATATTTGCACTGAGTCACTGGTGTGATCTTTATCCTTAGTCTCTTAAAAAAAGTTGGGCCATGGGCCACCTATTATAGCTTATAGATAATGATAATTTTATTCAGATAATGAGAATTTTATTTGAAGGTAAGTAGGTGGGTTTTGCTAGAGTCTTAAACTCTTAATAACAAGGGATAATGCCCACATTCTACTGACCAGGGGAGGTTGTTCTCAGATATCAGGTGCAGTGGTTATGAGTTAAAAGGGTTCTCGTTGAGATTTATCATTACCTTAAATTGGTTATATCAACTTTCAAGTAGATGTTTTTTTAGTTTTTCAACCCGAAGTGTTCTCTATTTTGCTTGATCTATTATTTGAAAATAAACAAGTGGCCCGATGTTGCTTAATGATGTAGCCACGTAGGAATCTGGTAAATCCAATAACAGTGAAGTATGCATATGGTAGAACAACCGTTTCTGATTTGAATTTCTGGTTGACCCTTTCACAGTTGTATGATGTGGTGCGTAAAGAGATATGGTACCGTCCAGACATGTTCTTCTACAGGGACATGCTCATGATGCTTGCAAGGAACCAAAAGGTCGAGGAAACAAACCGGGTGTGGGGAGACTTGAAGAGGGAAGAAGTACTATTTGATCAGCACACTTTCGGTGACATTATGAGGGCCTTTTTGGACAATGAACTGCCAAATAAGGCGATGGAAATATATGCTGAAATGAGGCAGTCCCCTGATCCCCCTCTTTCACTTCCTTTTCGAGTCATTCTGAAAGGGCTTATTCCATATCCAGAATTGAGGGAGAAGATCAAAGATGACTTTTTGGAGCTATTTCCCGGATGTTCTGTCTATGATCCTCCTGAAGACCTCTTTGATGACCAAGACTGGGAAACGGAGAGCGATACGGATTAA

mRNA sequence

TCATCAGAAAATGGGATACTCATACTCCGTATATCTTACTCGTAGTAAAATCTGGAAGTTGAAAGAGAGAAGAAGGTTCATCATCATCATTCATGTTCGTTCACACTCGTTCTGCACAATTCCTTCGCCGAGCTATCTCAATTTCAAATTCAAACTCAACATCAATTTCTCTTATTTTTTCTAAAACCCTAAACCCCAATTTCAACAACGCCGTATTTCAATGTTTGATTCGGAAAATCAGCACAACTTCATCGTTGTCATCATCGGCGGCGGCGGAAGGAGTGTGGCGGGACCCTAATAGAATATCAATATGGAGGAGAAAGAAAGAAATTGGGAAAGAAGGTTTAATTGTTGCGAAAGAGTTGAAGCGTCTTCAATCAAACCCTCTTCGTCTTCAACGATGTATTCAATCAAATGTTTCTCGTCTCCTTAAATCTGACCTTGTTTCTGTTCTTGCTGAGTTTCAACGCCAAGACCAAGTATTTCTCTCTATGAAATTGTATGATGTGGTGCGTAAAGAGATATGGTACCGTCCAGACATGTTCTTCTACAGGGACATGCTCATGATGCTTGCAAGGAACCAAAAGGTCGAGGAAACAAACCGGGTGTGGGGAGACTTGAAGAGGGAAGAAGTACTATTTGATCAGCACACTTTCGGTGACATTATGAGGGCCTTTTTGGACAATGAACTGCCAAATAAGGCGATGGAAATATATGCTGAAATGAGGCAGTCCCCTGATCCCCCTCTTTCACTTCCTTTTCGAGTCATTCTGAAAGGGCTTATTCCATATCCAGAATTGAGGGAGAAGATCAAAGATGACTTTTTGGAGCTATTTCCCGGATGTTCTGTCTATGATCCTCCTGAAGACCTCTTTGATGACCAAGACTGGGAAACGGAGAGCGATACGGATTAA

Coding sequence (CDS)

ATGTTCGTTCACACTCGTTCTGCACAATTCCTTCGCCGAGCTATCTCAATTTCAAATTCAAACTCAACATCAATTTCTCTTATTTTTTCTAAAACCCTAAACCCCAATTTCAACAACGCCGTATTTCAATGTTTGATTCGGAAAATCAGCACAACTTCATCGTTGTCATCATCGGCGGCGGCGGAAGGAGTGTGGCGGGACCCTAATAGAATATCAATATGGAGGAGAAAGAAAGAAATTGGGAAAGAAGGTTTAATTGTTGCGAAAGAGTTGAAGCGTCTTCAATCAAACCCTCTTCGTCTTCAACGATGTATTCAATCAAATGTTTCTCGTCTCCTTAAATCTGACCTTGTTTCTGTTCTTGCTGAGTTTCAACGCCAAGACCAAGTATTTCTCTCTATGAAATTGTATGATGTGGTGCGTAAAGAGATATGGTACCGTCCAGACATGTTCTTCTACAGGGACATGCTCATGATGCTTGCAAGGAACCAAAAGGTCGAGGAAACAAACCGGGTGTGGGGAGACTTGAAGAGGGAAGAAGTACTATTTGATCAGCACACTTTCGGTGACATTATGAGGGCCTTTTTGGACAATGAACTGCCAAATAAGGCGATGGAAATATATGCTGAAATGAGGCAGTCCCCTGATCCCCCTCTTTCACTTCCTTTTCGAGTCATTCTGAAAGGGCTTATTCCATATCCAGAATTGAGGGAGAAGATCAAAGATGACTTTTTGGAGCTATTTCCCGGATGTTCTGTCTATGATCCTCCTGAAGACCTCTTTGATGACCAAGACTGGGAAACGGAGAGCGATACGGATTAA

Protein sequence

MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAAAEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPEDLFDDQDWETESDTD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11929.1Spo11929.1mRNA


Homology
[Close]
BLAST of Spo11929.1 vs. NCBI nr
Match: gi|902238291|gb|KNA25114.1| (hypothetical protein SOVF_009230 [Spinacia oleracea])

HSP 1 Score: 535.4 bits (1378), Expect = 5.700e-149
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1 

		  

Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNN VFQCLIRKISTTSSLSSSAA
Sbjct: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNVVFQCLIRKISTTSSLSSSAA 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV
Sbjct: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 274
           KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD
Sbjct: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 273
[Close]
BLAST of Spo11929.1 vs. NCBI nr
Match: gi|731325932|ref|XP_010673765.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 435.3 bits (1118), Expect = 8.100e-119
Identity = 226/271 (83.39%), Postives = 241/271 (88.93%), Query Frame = 1 

		  

Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MF HTR+ Q LR AISIS  N  +IS +F KTLNPNF    FQ LIRK+ST +S     +
Sbjct: 1   MFGHTRTLQLLRGAISISTLNPETISHLFPKTLNPNFEIPKFQWLIRKLSTATS-----S 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           A GVWR+PN ISIWRRKKEIGKEGLIVAKELKRLQSN +RLQR IQSNVSRLLKSDLVSV
Sbjct: 61  AGGVWRNPNSISIWRRKKEIGKEGLIVAKELKRLQSNHIRLQRFIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARN+KVEE  RVW DLK+EE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVEEAKRVWEDLKKEE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDI+RAFLDNELPN+AMEIY EMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIIRAFLDNELPNEAMEIYDEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESD 272
           KDDFLELFPG SVYDPPEDLFDDQDW+T+S+
Sbjct: 241 KDDFLELFPGFSVYDPPEDLFDDQDWKTDSE 266
[Close]
BLAST of Spo11929.1 vs. NCBI nr
Match: gi|694448964|ref|XP_009350240.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 344.4 bits (882), Expect = 1.900e-91
Identity = 166/203 (81.77%), Postives = 189/203 (93.10%), Query Frame = 1 

		  

Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRRKKE+GKEGL+VAKELKRL+S PLRL   I+S+VSRLLKSDL++VLAEFQRQDQV
Sbjct: 76  LSIWRRKKEMGKEGLMVAKELKRLRSQPLRLDHFIRSHVSRLLKSDLLAVLAEFQRQDQV 135

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FLSMK+YDVVRKEIWYRPDMFFYRDMLMMLARN+KV+E  +VWGDLKREEVLFDQHTFGD
Sbjct: 136 FLSMKIYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEAKKVWGDLKREEVLFDQHTFGD 195

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLD  LP++AMEIY EMRQSPDPP+SLPFRVILKGL+PYPELREK+KDDFLELFP 
Sbjct: 196 IIRAFLDGGLPSEAMEIYGEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPD 255

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             VYDPPEDLF+D++W+ ES+ D
Sbjct: 256 MIVYDPPEDLFEDEEWKRESEDD 278
[Close]
BLAST of Spo11929.1 vs. NCBI nr
Match: gi|595886826|ref|XP_007213347.1| (hypothetical protein PRUPE_ppa1027127mg [Prunus persica])

HSP 1 Score: 342.8 bits (878), Expect = 5.500e-91
Identity = 165/203 (81.28%), Postives = 190/203 (93.60%), Query Frame = 1 

		  

Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRR+KE+GKEGLI AKELKRL+S+PLRL + I+SNVSRLLKSDL++VLAEFQRQDQV
Sbjct: 62  LSIWRRRKEMGKEGLIAAKELKRLRSHPLRLDQFIRSNVSRLLKSDLIAVLAEFQRQDQV 121

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FLSMK+YDVVRKEIWYRPDMFFYRDMLMML RN+KV+E  +VWGDLKREEVLFDQHTFGD
Sbjct: 122 FLSMKIYDVVRKEIWYRPDMFFYRDMLMMLGRNKKVDEAKQVWGDLKREEVLFDQHTFGD 181

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLDN LP++AMEIY EMRQSPDPP+SLPFRVILKGL+PYPELREK+KDDFLELFP 
Sbjct: 182 IIRAFLDNGLPSEAMEIYDEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPD 241

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             +YDPPEDLF+DQ+ +TE++ D
Sbjct: 242 MIIYDPPEDLFEDQECKTENEDD 264
[Close]
BLAST of Spo11929.1 vs. NCBI nr
Match: gi|1009114387|ref|XP_015873659.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Ziziphus jujuba])

HSP 1 Score: 342.4 bits (877), Expect = 7.100e-91
Identity = 175/253 (69.17%), Postives = 208/253 (82.21%), Query Frame = 1 

		  

Query: 21  NSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAAAEGVWRDPNRISIWRRKKEI 80
           N++S  L+  +  + N N      ++R  S+ S    S            +SIWRRKKEI
Sbjct: 45  NTSSSELVLQQQQHQNPNQPPLSRVLRLYSSASGSRPS------------LSIWRRKKEI 104

Query: 81  GKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDVV 140
           GKEGLIVAKELKRL+SNPLRL R I+S+VSRLLKSDLV+VLAEFQRQDQVFLSMK+YDVV
Sbjct: 105 GKEGLIVAKELKRLRSNPLRLDRFIRSHVSRLLKSDLVAVLAEFQRQDQVFLSMKIYDVV 164

Query: 141 RKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNEL 200
           RKEIWY+PDMFFYRDMLMMLARN+KV+E+ +VW DLKRE VLFDQHTFGDI+RA+LD+ L
Sbjct: 165 RKEIWYKPDMFFYRDMLMMLARNKKVDESKQVWEDLKREGVLFDQHTFGDIIRAYLDSGL 224

Query: 201 PNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPEDL 260
           P++AMEIY EMR+SPDPP+SLPFRVILKGL+PYPELREK+KD+FLELFPG  VYDPPEDL
Sbjct: 225 PSEAMEIYDEMRRSPDPPISLPFRVILKGLLPYPELREKVKDEFLELFPGMIVYDPPEDL 284

Query: 261 FDDQDWETESDTD 274
           F+DQ+W  +S+ D
Sbjct: 285 FEDQEWRRDSEDD 285
[Close]
BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1Q9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009230 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 4.000e-149
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1 

		  

Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNN VFQCLIRKISTTSSLSSSAA
Sbjct: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNVVFQCLIRKISTTSSLSSSAA 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV
Sbjct: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 274
           KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD
Sbjct: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 273
[Close]
BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CM64_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073770 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 5.600e-119
Identity = 226/271 (83.39%), Postives = 241/271 (88.93%), Query Frame = 1 

		  

Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MF HTR+ Q LR AISIS  N  +IS +F KTLNPNF    FQ LIRK+ST +S     +
Sbjct: 1   MFGHTRTLQLLRGAISISTLNPETISHLFPKTLNPNFEIPKFQWLIRKLSTATS-----S 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           A GVWR+PN ISIWRRKKEIGKEGLIVAKELKRLQSN +RLQR IQSNVSRLLKSDLVSV
Sbjct: 61  AGGVWRNPNSISIWRRKKEIGKEGLIVAKELKRLQSNHIRLQRFIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARN+KVEE  RVW DLK+EE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVEEAKRVWEDLKKEE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDI+RAFLDNELPN+AMEIY EMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIIRAFLDNELPNEAMEIYDEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESD 272
           KDDFLELFPG SVYDPPEDLFDDQDW+T+S+
Sbjct: 241 KDDFLELFPGFSVYDPPEDLFDDQDWKTDSE 266
[Close]
BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: M5WMR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027127mg PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.800e-91
Identity = 165/203 (81.28%), Postives = 190/203 (93.60%), Query Frame = 1 

		  

Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRR+KE+GKEGLI AKELKRL+S+PLRL + I+SNVSRLLKSDL++VLAEFQRQDQV
Sbjct: 62  LSIWRRRKEMGKEGLIAAKELKRLRSHPLRLDQFIRSNVSRLLKSDLIAVLAEFQRQDQV 121

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FLSMK+YDVVRKEIWYRPDMFFYRDMLMML RN+KV+E  +VWGDLKREEVLFDQHTFGD
Sbjct: 122 FLSMKIYDVVRKEIWYRPDMFFYRDMLMMLGRNKKVDEAKQVWGDLKREEVLFDQHTFGD 181

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLDN LP++AMEIY EMRQSPDPP+SLPFRVILKGL+PYPELREK+KDDFLELFP 
Sbjct: 182 IIRAFLDNGLPSEAMEIYDEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPD 241

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             +YDPPEDLF+DQ+ +TE++ D
Sbjct: 242 MIIYDPPEDLFEDQECKTENEDD 264
[Close]
BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: A0A059D9X5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03737 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.400e-90
Identity = 169/203 (83.25%), Postives = 187/203 (92.12%), Query Frame = 1 

		  

Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRRKKEIGKEGLIVAKELKR+QSNP+RL R I+S+VSRLLKSDL+SVLAEFQRQDQV
Sbjct: 57  LSIWRRKKEIGKEGLIVAKELKRIQSNPVRLDRFIKSHVSRLLKSDLISVLAEFQRQDQV 116

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FL MKLY+VVRKEIWYRPDMFFYRDMLMMLARN+ V+E   VW DLKREEVLFDQHTFGD
Sbjct: 117 FLCMKLYNVVRKEIWYRPDMFFYRDMLMMLARNKNVDEVRHVWEDLKREEVLFDQHTFGD 176

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           IMRAFLD+ LP++AMEIY EMR+SPDPPLSLPFRVILKGLIPYPELRE++KDDFLELFPG
Sbjct: 177 IMRAFLDSGLPSEAMEIYDEMRRSPDPPLSLPFRVILKGLIPYPELRERVKDDFLELFPG 236

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             VYDPPEDLF+DQ+   ES+ D
Sbjct: 237 MIVYDPPEDLFEDQELIKESEDD 259
[Close]
BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: B9GG76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28180g PE=4 SV=2)

HSP 1 Score: 332.4 bits (851), Expect = 5.100e-88
Identity = 163/203 (80.30%), Postives = 185/203 (91.13%), Query Frame = 1 

		  

Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRRKKE+GKEGL+ AKELKRLQSNP+RL R I SNVSRLLKSDL++VLAEFQRQDQV
Sbjct: 44  LSIWRRKKEMGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQV 103

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FL MKLYDVVRKEIWYRPDMF +RDMLMMLARN+KV+E N+VW DL+REEVLFDQHTFGD
Sbjct: 104 FLCMKLYDVVRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGD 163

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLDN LP+KAM+IY EMRQSPDPP+SLPFRVILKGLIP+PELRE++KDDFLELFP 
Sbjct: 164 IIRAFLDNGLPSKAMDIYEEMRQSPDPPISLPFRVILKGLIPFPELREEVKDDFLELFPD 223

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             VYDP EDLF+DQ+ E + + D
Sbjct: 224 MIVYDPAEDLFEDQEREKDREDD 246
[Close]
BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.500e-82
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 1 

		  

Query: 80  IGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDV 139
           + KEGLI AKELKRLQ+  +RL R I S+VSRLLKSDLVSVLAEFQRQ+QVFL MKLY+V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 140 VRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNE 199
           VR+EIWYRPDMFFYRDMLMMLARN+KV+ET +VW DLK+EEVLFDQHTFGD++R FLDNE
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 200 LPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPED 259
           LP +AM +Y EMR+SPD PLSLPFRVILKGL+PYPELREK+KDDFLELFPG  VYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 260 LFDDQDWETESDTD 274
           + +D D E  +D+D
Sbjct: 181 ICEDSDEEARTDSD 194
[Close]
BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.700e-47
Identity = 85/189 (44.97%), Postives = 138/189 (73.02%), Query Frame = 1 

		  

Query: 73  IWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFL 132
           +WR KK IGKE L V   LKRL+ +  +L + I+++V RLLK D+++V+ E +RQ++  L
Sbjct: 66  LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETAL 125

Query: 133 SMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIM 192
           ++K+++V++K+ WY+PD+F Y+D+++ LA++++++E   +W  +K+E +  D  T+ +++
Sbjct: 126 AIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVI 185

Query: 193 RAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCS 252
           R FL +  P  AM +Y +M +SPDPP  LPFRV+LKGL+P+P LR K+K DF ELFP   
Sbjct: 186 RGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKH 245

Query: 253 VYDPPEDLF 262
            YDPPE++F
Sbjct: 246 AYDPPEEIF 254
[Close]
BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 306.2 bits (783), Expect = 2.000e-83
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 1 

		  

Query: 80  IGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDV 139
           + KEGLI AKELKRLQ+  +RL R I S+VSRLLKSDLVSVLAEFQRQ+QVFL MKLY+V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 140 VRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNE 199
           VR+EIWYRPDMFFYRDMLMMLARN+KV+ET +VW DLK+EEVLFDQHTFGD++R FLDNE
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 200 LPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPED 259
           LP +AM +Y EMR+SPD PLSLPFRVILKGL+PYPELREK+KDDFLELFPG  VYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 260 LFDDQDWETESDTD 274
           + +D D E  +D+D
Sbjct: 181 ICEDSDEEARTDSD 194
[Close]
BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 191.0 bits (484), Expect = 9.400e-49
Identity = 85/189 (44.97%), Postives = 138/189 (73.02%), Query Frame = 1 

		  

Query: 73  IWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFL 132
           +WR KK IGKE L V   LKRL+ +  +L + I+++V RLLK D+++V+ E +RQ++  L
Sbjct: 66  LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETAL 125

Query: 133 SMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIM 192
           ++K+++V++K+ WY+PD+F Y+D+++ LA++++++E   +W  +K+E +  D  T+ +++
Sbjct: 126 AIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVI 185

Query: 193 RAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCS 252
           R FL +  P  AM +Y +M +SPDPP  LPFRV+LKGL+P+P LR K+K DF ELFP   
Sbjct: 186 RGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKH 245

Query: 253 VYDPPEDLF 262
            YDPPE++F
Sbjct: 246 AYDPPEEIF 254
[Close]
BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 84.7 bits (208), Expect = 9.500e-17
Identity = 48/136 (35.29%), Postives = 80/136 (58.82%), Query Frame = 1 

		  

Query: 96  SNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRD 155
           S+   L R I S   RLLK D+V+VL E  RQ++  L++K+++ +RKE WY+P +  Y D
Sbjct: 536 SSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTD 595

Query: 156 MLMMLARNQKVEETNRVWGDLKREEVLFDQ-HTFGDIMRAFLDNELPNKAMEIYAEMRQS 215
           M+ ++A N  +EE N ++  +K E+ L  +   F  ++   L+++L +  M+ YA M+  
Sbjct: 596 MITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSI 655

Query: 216 PDPPLSLPFRVILKGL 231
              P    FRV++ GL
Sbjct: 656 GYEPDRASFRVLVLGL 671
[Close]
BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 59.7 bits (143), Expect = 3.300e-9
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1 

		  

Query: 80  IGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDV 139
           +  E +   + LKR     + L   ++  + RL+KSDL+SVL E  RQD   L++ +   
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 140 VRKEIWYRP-DMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDN 199
           +R E  Y P D+  Y D++  L RN++ +E +R+ G++   +   D      ++RA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 200 ELPNKAMEIYAEMRQS 215
           E     + +Y  MR+S
Sbjct: 168 ERRESVVRVYTLMRES 180
The following BLAST results are available for this feature:
BLAST of Spo11929.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902238291|gb|KNA25114.1|5.7e-14999.6hypothetical protein SOVF_0092... [more]
gi|731325932|ref|XP_010673765.1|8.1e-11983.3PREDICTED: pentatricopeptide r... [more]
gi|694448964|ref|XP_009350240.1|1.9e-9181.7PREDICTED: pentatricopeptide r... [more]
gi|595886826|ref|XP_007213347.1|5.5e-9181.2hypothetical protein PRUPE_ppa... [more]
gi|1009114387|ref|XP_015873659.1|7.1e-9169.1PREDICTED: pentatricopeptide r... [more]
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BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S1Q9_SPIOL4.0e-14999.6Uncharacterized protein OS=Spi... [more]
A0A0J8CM64_BETVU5.6e-11983.3Uncharacterized protein OS=Bet... [more]
M5WMR9_PRUPE3.8e-9181.2Uncharacterized protein OS=Pru... [more]
A0A059D9X5_EUCGR1.4e-9083.2Uncharacterized protein OS=Euc... [more]
B9GG76_POPTR5.1e-8880.3Uncharacterized protein OS=Pop... [more]
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BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPR89_ARATH3.5e-8277.3Pentatricopeptide repeat-conta... [more]
PP266_ARATH1.7e-4744.9Pentatricopeptide repeat-conta... [more]
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BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G62350.12.0e-8377.3Pentatricopeptide repeat (PPR)... [more]
AT3G46870.19.4e-4944.9Pentatricopeptide repeat (PPR)... [more]
AT5G09320.19.5e-1735.2Vacuolar sorting protein 9 (VP... [more]
AT3G27750.13.3e-929.4FUNCTIONS IN: molecular_functi... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 184..218
score: 8.78coord: 149..183
score: 6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..273
score: 8.9
NoneNo IPR availablePANTHERPTHR24015:SF590SUBFAMILY NOT NAMEDcoord: 1..273
score: 8.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0009987 cellular process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0009407 toxin catabolic process
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0016556 mRNA modification
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006768 biotin metabolic process
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005768 endosome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004602 glutathione peroxidase activity
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0016874 ligase activity
RNA-Seq Expression