Spo11962 (gene)

Overview
NameSpo11962
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUbiquitin-like protein 5
Locationchr4 : 8487092 .. 8489973 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGGAGACGAGGAGTACTTTGGCCTATTCATGGACGTCCAATTGATTGTTCTGTATGTTGTTTATCCTTCCCTGTTTCCACAGTTCTCTTTGACTAATAGGTTTTTGAACCTACGGTTGCTTGGTGTTAACTGTTTAAGATTATGTTGTTCTCTAGTGTCTCCGTTCTTACTGTTTGTTTTAGTTTTGCTTATGAAATGTGAAAAACAAAATCAGAGATTTCAAATTGGGAATAAGATTAAGATATTCTATGCTCGCTTTATAGTAGGTTGACATAATGTTTGGCTAGTCTTTAGTCTTATAGAAGACAGAGTCATCTGGATGGAGCACCTATAGAATCGTGACAGTGTTGGAATTTGGACTTGTACTTCTTGAGAGTACTTCGTTTGGTTCATTGTGTACACATATCTTAAGTATGTTGATAGTGGTCTAATCCTTGATTATGTATCCCATATCTTTCTATGTCATGATTTGTTAGTTTAATGTTTAGAAATTTTAGTTAAATGTTAATTTTGTGGTTGAGAAAAATATTAGGAAATTGTGGTGGACCTGGGGTGCTCAATTTTCAATGTTTACTTTTTGTAGGTGAGACAAAAAGAAGGAAAGATGATTGAGGTGGTGTTGAACGACAGATTGGGGAAGAAAGTGCGCGTAAAGTGCAACGAAGATGACACCGTTGGAGACTTGAAGAAGCTTGTTGCTGCTCAGACTGGTACTCGCTCTGAAAAGATACGAATTCAGAAGTGGTACACAATTTACAAGGATCATATCACGCTCAGGGATTACGAGATTCATGATGGCATGGGTCTCGAGCTCTACTACAATTGATCACCTTCTTCTTCATGGTTGTTATTCTTTTCTCACTCACTTTCTGTTTTTTTCGATGTCTTTTGGAGTAATTTTCATGTTAATTTTGTGAGTGTTTCACGCTCAAGGATTACCAGATTGTTACGTATGAATTTCCTCCATGGTTCTTGTATAGTTTCACCTCAAAAGGCTGTTATACATCTGTTTTATAGAGAAATGAAAACAACATCTCCATATACCTTTTTAATCATCCATGAATTGATTAGGGATAGACATTTGAAGTACTGATCTTGTCATCACATAGTAGGTATGGATCCATTTGATCCACATTTTGTCCTTTATTTGTAGATTCCAAAGTAGTTTACAAATGGCTGCTTGATTCAACAATTGATCTGTCTGAATCCTCTAATAGAAGATGTATTGGGCACTTTAGGAATTAAAGAAACATATGTGCAATTTACCTGCTCAGGCATCTTAGAGTGAATAAAGAATTCCTGCACTACAGTAGTTATGCTTTTTCCTATTATACCCCATACCTTCTGAAAAAAATAGCCATTATAACCATCAATTCCAGGAGCTTTCGAGCTGTTAATGCCAAAAGCAGCTTGTTTTATCTCCTCCACAGTAACATATGCACAAAGGCTTGACGGTCCAGTATAGGTCCTTTCTCAATGATGGTTCTGTCTACCATTGGGAGTTCTGAGGCAGCAGATCCCATTAGTTTCCCATAGAGACCATAACTTTATCCTTGGTATGATTCTAAGAATGAAGCCATTAGCAATTGTCACACACTCACACTATATGTTGTCATTGGGTAGAGCACTACCAGATCATTTTTTTAATGTTCATAGAGACTTTAATGTAAAGTGTTCGTTCTGTAAAGGATATTGACATATCGTTAGTCAAATAATCTGCGGTTTACTCTGTGCTATGAGTATTTGTTGTAATCTTCTTGTTACTCTCGCATGCAAACATTGGGTATATTTTTAGCTGAACTGACATCATAAACTTCTGTTTCTTTAGTTTTCATTGGACAACCATAATTTACTAATTGACTTGTCAAATATTATTTTTTAGCGTTCAGGTCATCATTGATGTACCTAACTACCTACCTATGTGCAACTTGAAAACATAAAGAAGTTTTGGTTTGATGCAAACTCAAGTACAAGTCACCCTTTTATGATTTAAAGTCGCCTCATATTTCTTGAAAAGTTAACTCTTTGTGTGAATGTTGCTGTTAAATTATCTCAGCAAAAACCATGTTTTACCATACACCTGTCTAGTCTTTGTGTGAATGTTTTGATGGATTATTGCATTTGAGATCATTAGATAAGATATCTTCCCCTTTCTTTTGACTATTTAGAACCTTCCAAGAGTAAATTTCCATGTTTACACAAGTTGTCCATGGGTTATGCAGGGTTATAACTTATTAATGCTTGAATAATAAGGAGTATTTTGCTAGGAAACTATCAACTCTGTAATCTGTACTATGATATGAATTAAGGGTATACTTCGTATTGTTTACTATCTGTCCGTATTATGCTTATGTCGAGTTTATTCTATTACTCGACTAACAGAAATATGACCCATCATCTTTTCTGCTGTTTCTTATTTTATTTTTTTTTATCATTTTATCTTCCTTCAAGTTCTAATATCTCTCAATTTTCTGTGATTGCTCATTTGCAGGCTTGCAGCTGGAGCAAGACATTGTGCAAAAAGGAGGGATAGTTTCGACCAAGGATTAAGTATTGGAAACCTTTGTATTTTCTAGCAAAACCAAACAAAAAGAAAGTTATTAAATCGTGCTTGAGCCTTGATGTGTAGATCCTTTTGCAGGTCTCTGTAAACTTTGTTTCAAGAACCACTGTGAATAAACCATGCCTAATTCTGAAACTTTAGTTACTGTTTTCTTGTGAGATATATTTCAGGCCTCATCCTGTTTAACCAAATTGTGTGACAAATTATTGCATGACATTCTTGATGCATCGAAGTTGTGTACGGATACTTGTGTTTAGTGTTCATGTTTCTTTGTGGTTGACTTGTAGGCTACTTAATACAAAGTATCTAATTT

mRNA sequence

ATGTCGAGGAGACGAGGAGTACTTTGGCCTATTCATGGACGTCCAATTGATTGTTCTGTGAGACAAAAAGAAGGAAAGATGATTGAGGTGGTGTTGAACGACAGATTGGGGAAGAAAGTGCGCGTAAAGTGCAACGAAGATGACACCGTTGGAGACTTGAAGAAGCTTGTTGCTGCTCAGACTGGTACTCGCTCTGAAAAGATACGAATTCAGAAGTGGTACACAATTTACAAGGATCATATCACGCTCAGGGATTACGAGATTCATGATGGCATGGGTCTCGAGCTCTACTACAATTGATCACCTTCTTCTTCATGGCTTGCAGCTGGAGCAAGACATTGTGCAAAAAGGAGGGATAGTTTCGACCAAGGATTAAGTATTGGAAACCTTTGTATTTTCTAGCAAAACCAAACAAAAAGAAAGTTATTAAATCGTGCTTGAGCCTTGATGTGTAGATCCTTTTGCAGGTCTCTGTAAACTTTGTTTCAAGAACCACTGTGAATAAACCATGCCTAATTCTGAAACTTTAGTTACTGTTTTCTTGTGAGATATATTTCAGGCCTCATCCTGTTTAACCAAATTGTGTGACAAATTATTGCATGACATTCTTGATGCATCGAAGTTGTGTACGGATACTTGTGTTTAGTGTTCATGTTTCTTTGTGGTTGACTTGTAGGCTACTTAATACAAAGTATCTAATTT

Coding sequence (CDS)

ATGTCGAGGAGACGAGGAGTACTTTGGCCTATTCATGGACGTCCAATTGATTGTTCTGTGAGACAAAAAGAAGGAAAGATGATTGAGGTGGTGTTGAACGACAGATTGGGGAAGAAAGTGCGCGTAAAGTGCAACGAAGATGACACCGTTGGAGACTTGAAGAAGCTTGTTGCTGCTCAGACTGGTACTCGCTCTGAAAAGATACGAATTCAGAAGTGGTACACAATTTACAAGGATCATATCACGCTCAGGGATTACGAGATTCATGATGGCATGGGTCTCGAGCTCTACTACAATTGA

Protein sequence

MSRRRGVLWPIHGRPIDCSVRQKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDYEIHDGMGLELYYN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11962.1Spo11962.1mRNA


Homology
[Close]
BLAST of Spo11962.1 vs. NCBI nr
Match: gi|937937741|dbj|BAT12654.1| (Os11g0145400, partial [Oryza sativa Japonica Group])

HSP 1 Score: 154.1 bits (388), Expect = 1.300e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 1 

		  

Query: 18  CSVRQKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIY 77
           C +R +EGKMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR EKIRIQKWY IY
Sbjct: 3   CDLR-EEGKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIY 62

Query: 78  KDHITLRDYEIHDGMGLELYYN 100
           KDHITL+DYEIHDGMGLELYYN
Sbjct: 63  KDHITLKDYEIHDGMGLELYYN 83
[Close]
BLAST of Spo11962.1 vs. NCBI nr
Match: gi|514805304|ref|XP_004977514.1| (PREDICTED: ubiquitin-like protein 5 [Setaria italica])

HSP 1 Score: 152.9 bits (385), Expect = 2.900e-34
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1 

		  

Query: 23  KEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHIT 82
           +EGKMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR EKIRIQKWY IYKDHIT
Sbjct: 59  EEGKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIT 118

Query: 83  LRDYEIHDGMGLELYYN 100
           L+DYEIHDGMGLELYYN
Sbjct: 119 LKDYEIHDGMGLELYYN 135
[Close]
BLAST of Spo11962.1 vs. NCBI nr
Match: gi|77553656|gb|ABA96452.1| (GRF zinc finger family protein [Oryza sativa Japonica Group])

HSP 1 Score: 151.8 bits (382), Expect = 6.500e-34
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1 

		  

Query: 22  QKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHI 81
           ++E KMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR EKIRIQKWY IYKDHI
Sbjct: 201 EEEEKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHI 260

Query: 82  TLRDYEIHDGMGLELYYN 100
           TLRDYEIHDGMGLELYYN
Sbjct: 261 TLRDYEIHDGMGLELYYN 278
[Close]
BLAST of Spo11962.1 vs. NCBI nr
Match: gi|902198663|gb|KNA13741.1| (hypothetical protein SOVF_114000 [Spinacia oleracea])

HSP 1 Score: 151.8 bits (382), Expect = 6.500e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

		  

Query: 27  MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
           MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 60

Query: 87  EIHDGMGLELYYN 100
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73
[Close]
BLAST of Spo11962.1 vs. NCBI nr
Match: gi|566167963|ref|XP_006384908.1| (hypothetical protein POPTR_0004s22120g [Populus trichocarpa])

HSP 1 Score: 151.8 bits (382), Expect = 6.500e-34
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 1 

		  

Query: 21  RQKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDH 80
           R+ +G+MIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR +KIRIQKWYTIYKDH
Sbjct: 22  RKGKGRMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDH 81

Query: 81  ITLRDYEIHDGMGLELYYN 100
           ITL+DYEIHDGMGLELYYN
Sbjct: 82  ITLKDYEIHDGMGLELYYN 100
[Close]
BLAST of Spo11962.1 vs. UniProtKB/TrEMBL
Match: A0A0P0XYN0_ORYSJ (Os11g0145400 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os11g0145400 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.100e-35
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 1 

		  

Query: 18  CSVRQKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIY 77
           C +R +EGKMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR EKIRIQKWY IY
Sbjct: 3   CDLR-EEGKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIY 62

Query: 78  KDHITLRDYEIHDGMGLELYYN 100
           KDHITL+DYEIHDGMGLELYYN
Sbjct: 63  KDHITLKDYEIHDGMGLELYYN 83
[Close]
BLAST of Spo11962.1 vs. UniProtKB/TrEMBL
Match: W5ERL7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.100e-35
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 

		  

Query: 13  GRPIDCSVRQKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQK 72
           GR ID S R    KMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR+EKIRIQK
Sbjct: 67  GRSIDQSTRAG-AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQK 126

Query: 73  WYTIYKDHITLRDYEIHDGMGLELYYN 100
           WYTIYKDHITL DYEIHDGMGLELYYN
Sbjct: 127 WYTIYKDHITLGDYEIHDGMGLELYYN 152
[Close]
BLAST of Spo11962.1 vs. UniProtKB/TrEMBL
Match: K3YAP7_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_011289mg PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.000e-34
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1 

		  

Query: 23  KEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHIT 82
           +EGKMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR EKIRIQKWY IYKDHIT
Sbjct: 59  EEGKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIT 118

Query: 83  LRDYEIHDGMGLELYYN 100
           L+DYEIHDGMGLELYYN
Sbjct: 119 LKDYEIHDGMGLELYYN 135
[Close]
BLAST of Spo11962.1 vs. UniProtKB/TrEMBL
Match: U5GGV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22120g PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.500e-34
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 1 

		  

Query: 21  RQKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDH 80
           R+ +G+MIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR +KIRIQKWYTIYKDH
Sbjct: 22  RKGKGRMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDH 81

Query: 81  ITLRDYEIHDGMGLELYYN 100
           ITL+DYEIHDGMGLELYYN
Sbjct: 82  ITLKDYEIHDGMGLELYYN 100
[Close]
BLAST of Spo11962.1 vs. UniProtKB/TrEMBL
Match: A0A0P0Y727_ORYSJ (Os12g0143100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0143100 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.500e-34
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1 

		  

Query: 22  QKEGKMIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHI 81
           ++E KMIEVVLNDRLGKKVRVKCNEDDT+GDLKKLVAAQTGTR EKIRIQKWY IYKDHI
Sbjct: 14  EEEEKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHI 73

Query: 82  TLRDYEIHDGMGLELYYN 100
           TLRDYEIHDGMGLELYYN
Sbjct: 74  TLRDYEIHDGMGLELYYN 91
[Close]
BLAST of Spo11962.1 vs. ExPASy Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.200e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 1 

		  

Query: 27  MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
           MIEVVLNDRLGKKVRVKCN+DDT+GDLKKLVAAQTGTR+EKIRIQKWY IYKDHITL+DY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 87  EIHDGMGLELYYN 100
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73
[Close]
BLAST of Spo11962.1 vs. ExPASy Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.400e-28
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 

		  

Query: 27 MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
          MIEVV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR  KI ++KWYTI+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 87 EIHDGMGLELYY 99
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72
[Close]
BLAST of Spo11962.1 vs. ExPASy Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.400e-28
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 

		  

Query: 27 MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
          MIEVV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR  KI ++KWYTI+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 87 EIHDGMGLELYY 99
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72
[Close]
BLAST of Spo11962.1 vs. ExPASy Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.400e-28
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 

		  

Query: 27 MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
          MIEVV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR  KI ++KWYTI+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 87 EIHDGMGLELYY 99
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72
[Close]
BLAST of Spo11962.1 vs. ExPASy Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.400e-28
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 

		  

Query: 27 MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
          MIEVV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR  KI ++KWYTI+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 87 EIHDGMGLELYY 99
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72
[Close]
BLAST of Spo11962.1 vs. TAIR (Arabidopsis)
Match: AT5G42300.1 (ubiquitin-like protein 5)

HSP 1 Score: 146.0 bits (367), Expect = 1.300e-35
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 1 

		  

Query: 27  MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
           MIEVVLNDRLGKKVRVKCN+DDT+GDLKKLVAAQTGTR+EKIRIQKWY IYKDHITL+DY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 87  EIHDGMGLELYYN 100
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73
[Close]
BLAST of Spo11962.1 vs. TAIR (Arabidopsis)
Match: AT3G45180.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.400e-34
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 1 

		  

Query: 27  MIEVVLNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRSEKIRIQKWYTIYKDHITLRDY 86
           MIEVVLNDRLGKKVRVKCNE+DT+GDLKKLVAAQTGTR EKIRIQKWY IYKDHI L+DY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 87  EIHDGMGLELYYN 100
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73
The following BLAST results are available for this feature:
BLAST of Spo11962.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|937937741|dbj|BAT12654.1|1.3e-3490.2Os11g0145400, partial [Oryza s... [more]
gi|514805304|ref|XP_004977514.1|2.9e-3493.5PREDICTED: ubiquitin-like prot... [more]
gi|77553656|gb|ABA96452.1|6.5e-3492.3GRF zinc finger family protein... [more]
gi|902198663|gb|KNA13741.1|6.5e-34100.hypothetical protein SOVF_1140... [more]
gi|566167963|ref|XP_006384908.1|6.5e-3489.8hypothetical protein POPTR_000... [more]
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BLAST of Spo11962.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0P0XYN0_ORYSJ9.1e-3590.2Os11g0145400 protein (Fragment... [more]
W5ERL7_WHEAT9.1e-3588.5Uncharacterized protein OS=Tri... [more]
K3YAP7_SETIT2.0e-3493.5Uncharacterized protein OS=Set... [more]
U5GGV7_POPTR4.5e-3489.8Uncharacterized protein OS=Pop... [more]
A0A0P0Y727_ORYSJ4.5e-3492.3Os12g0143100 protein (Fragment... [more]
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BLAST of Spo11962.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBL5_ARATH2.2e-3493.1Ubiquitin-like protein 5 OS=Ar... [more]
UBL5_BOVIN2.4e-2880.5Ubiquitin-like protein 5 OS=Bo... [more]
UBL5_PSAOB2.4e-2880.5Ubiquitin-like protein 5 OS=Ps... [more]
UBL5_MOUSE2.4e-2880.5Ubiquitin-like protein 5 OS=Mu... [more]
UBL5_MESAU2.4e-2880.5Ubiquitin-like protein 5 OS=Me... [more]
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BLAST of Spo11962.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G42300.11.3e-3593.1ubiquitin-like protein 5[more]
AT3G45180.11.4e-3491.7Ubiquitin-like superfamily pro... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 37..96
score: 3.
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 28..99
score: 10
NoneNo IPR availableGENE3D3.10.20.90coord: 20..99
score: 1.6
NoneNo IPR availablePANTHERPTHR13042FAMILY NOT NAMEDcoord: 27..99
score: 4.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000303 response to superoxide
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0006547 histidine metabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0046251 limonene catabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0009733 response to auxin
biological_process GO:0009743 response to carbohydrate
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006574 valine catabolic process
biological_process GO:0016049 cell growth
biological_process GO:0008152 metabolic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0018108 peptidyl-tyrosine phosphorylation
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006897 endocytosis
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0016197 endosomal transport
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0006081 cellular aldehyde metabolic process
biological_process GO:0006007 glucose catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0015031 protein transport
biological_process GO:0006486 protein glycosylation
biological_process GO:0015976 carbon utilization
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0006730 one-carbon metabolic process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006699 bile acid biosynthetic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0007030 Golgi organization
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0019260 1,2-dichloroethane catabolic process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006468 protein phosphorylation
biological_process GO:0007033 vacuole organization
biological_process GO:0055085 transmembrane transport
biological_process GO:0009651 response to salt stress
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0005634 nucleus
cellular_component GO:0032588 trans-Golgi network membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005777 peroxisome
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004089 carbonate dehydratase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0047617 acyl-CoA hydrolase activity
molecular_function GO:0004715 non-membrane spanning protein tyrosine kinase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004029 aldehyde dehydrogenase (NAD) activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0005198 structural molecule activity
RNA-Seq Expression