Spo12029 (gene)

Overview
NameSpo12029
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 8249771 .. 8250251 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACTCCCCAAAACGGCGTCGTTTTCCGAGGGGAGCTTCCAATTAACGTCGACAAAAGGACGAAGCGTCGAAACGGTCGACGTCGAAAACGCGAATATCGTACTGTGGAGGAGGCGGTGGTGCCGACGGAGGACACAAAAAGACGGCGAGCTAACAAGGTGGCCCCACCGACGGCACACGGCGGTAATCGATGGCAGAGAAGAAATCGGTACTCGAGCTAGAATCTCGTAGAGGATGTCATCAGGGAGGGAAGAAATGGAGGTTTTAATAATCACTTTACTGGAAATTTTATTATTATTACTATTATTAGAAGAAGATAAAGGTATTATAATGGAGTGAGAAGGGTTAGTGGGGTTCGGGCAGCAGGATTTCATTAGAAGAGAGAAATGGCGTGAGTTGCAGCTTTCTCTTTCTCTCTCTACTGCCGCCATTGTTGGGCGGAGGAGAGAGAAGATGAAGCTTTTCTGGGGAAGATGA

mRNA sequence

ATGCAGACTCCCCAAAACGGCGTCGTTTTCCGAGGGGAGCTTCCAATTAACGTCGACAAAAGGACGAAGCGTCGAAACGGTCGACGTCGAAAACGCGAATATCGTACTGTGGAGGAGGCGGTGGTGCCGACGGAGGACACAAAAAGACGGCGAGCTAACAAGGTGGCCCCACCGACGGCACACGGCGGGTTAGTGGGGTTCGGGCAGCAGGATTTCATTAGAAGAGAGAAATGGCGTGAGTTGCAGCTTTCTCTTTCTCTCTCTACTGCCGCCATTGTTGGGCGGAGGAGAGAGAAGATGAAGCTTTTCTGGGGAAGATGA

Coding sequence (CDS)

ATGCAGACTCCCCAAAACGGCGTCGTTTTCCGAGGGGAGCTTCCAATTAACGTCGACAAAAGGACGAAGCGTCGAAACGGTCGACGTCGAAAACGCGAATATCGTACTGTGGAGGAGGCGGTGGTGCCGACGGAGGACACAAAAAGACGGCGAGCTAACAAGGTGGCCCCACCGACGGCACACGGCGGGTTAGTGGGGTTCGGGCAGCAGGATTTCATTAGAAGAGAGAAATGGCGTGAGTTGCAGCTTTCTCTTTCTCTCTCTACTGCCGCCATTGTTGGGCGGAGGAGAGAGAAGATGAAGCTTTTCTGGGGAAGATGA

Protein sequence

MQTPQNGVVFRGELPINVDKRTKRRNGRRRKREYRTVEEAVVPTEDTKRRRANKVAPPTAHGGLVGFGQQDFIRREKWRELQLSLSLSTAAIVGRRREKMKLFWGR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12029.1Spo12029.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12029.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12029.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12029.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12029.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010162 seed dormancy process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009555 pollen development
biological_process GO:0008152 metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0009972 cytidine deamination
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005886 plasma membrane
molecular_function GO:0004126 cytidine deaminase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression