Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAAAAGAAAAGAAAGCTGGCATCTGACTGTTTCTCTCTCACTCCCCAAAAACCACCCGTAAAACCTCCCCAAAATTCTCACCTACCCACCCGAAAACCCCGCACCAAAGAAACCCCAAACTCGACCGAGTCGACTCAGCCATGGAAGGACCTTCTGGTTCTGGAGCACCAATGGCCGATCCAGATGGAGACGACTCGCTCTTAGCGAACTCGGAGTTCTTAACTCGGCAGGAAGTAATGCAACGGCGAGAGCGCAAATTGAGGAAACTCGCCGATTGTTACAGGGATCATTACTGGTCGTTAATGGAGGAGGTGAGGCGAAAACATAGGGAGTACTACTGGACGTACGGAAAGAGTCCTTGCAAGGAAGAAGGGGATGAAGGTGAGGAGAGAGAAAACGGCGTCGCTAATGGAAGTCTGGTGAACGGCAATGGTGTCTCTAACGGTGGAAATGGTGTCGTTAATGGTAGCAATGATGATGACGTTGGTGGTGGTAATAAATTAGAGGTAGGTTTCAAGCATTGTTCTTATAATGGGTGTGAAGGGAAAGCTATGGCGTTAACGCAGTTTTGTATATTGCATATCATGCATGATAAAAAGCAGGTGCTCTACATAAAATGCAAATATCCGAAATTGAGGTCTTCCTCTTTCTCTCTCGTTTTATTTTCGCATTAATTAGGTCTTGATTGATGATTGAAATTGTTGGATTGTTGAACTTATTGATTAATTTGTTATTTCTTTTCCTCTCTCGTTTGATTTTCGCATATTTAGGTCTTGATTGATGGTTGAGATGGTTTGATTGTTGAACTTATTGATTAATTTGTTTACTTTTTTTTGGCTGTTTGTAGTTGATTAATTGTTTTTCTTTAGGGATTTGTCACTGTTTTCCCGTTGTTCATGTGGTTGTGATTTCTGTGAACTGTTGATAGATGGTGTTGCATTACAACGCTAGTTGATTCCAATCCTATGGCGATTTCTTAACAATTAGGACTATGCGAGTTTCATAAACAATCTATTGTGATGTGAAAGATGATTAGGAAGGAAAGGAAAGGAAAAAGGAAAGGAGAAGGGTGTGAGTGAATAGAAAAGAAAGGAAGGGCACTAATGTTTTCCTGAGGAACTTCAAAGACTCTATTATTTGGTCAGTAATTATTGGCTTTCTTTACATTCCGATCCAAACAATTTGGGGGCAAAGAAAAGATTACAAAAGTGACAGTTTAGTAAAGGAGGCTTTCATGTCATTCCTTTCCTTCCACACGAATTCCCTTACAATTATAAGTAAAAGTAAATTCTGCATAGTTGCTTAATTCCACTCCTTTTGCCTAAGCTGCTAATGTATATGTGTCATGTTCGACTGTGAAGATTTCGGGAAGTAATATAATAACGGGCCTTTCTGATGTATAGTTAAGTCTGCAAATTAGTGGCTTTTAGATTCTCTGAGAATTAGGGTTGCCCATCGTTTTGTGTATGGAGATTCACGTGCATAGGAATAAGACGTGCATTTAGATCAACGTGGTGTCAATGAGAAGTTACAATATCACGTAAAACAAGAAAATTACCTATACTGAGAGGGAATCTGCGAGGTTTAAAGTTTAATTATGAATATTGATTAGAAAACAGCCTTAGAAGCATAGTTGAAAGGAATGACGGGGTTTATAGCAGACTATTTGGCAAGCTGTGCAGTTGTTAAAGGAATAAAAGCTAAAGACTGCCGCCTTTTGTAATTTGGAAGTCCTATCCCGCTGAGTTTGTTAGGGTAGTTTCGGAGTGAAGTTTAAAGGACCTTTACACAAAACCGGGAGTAATGTGCAATTATGGTGCATTGGTTGCTGACAAACAGCTCTGGAATTGTAATTTAGCCACTGTGGAAGTGCATTTGTGCTGGGTTTATAATTTTAAATGCATGTGCTGTTTTCTGTCTCATACCTTATAAACTGATTATCAGGTATTCTGCCTTAAGAGTGCGAAGATTTGGTTTCACGTTGCAGAATAAGACAATAGTATTTTCTGACTTGTGGCTTGTTTGATGTTTCAAGGGTGCCAAATCTGATGTATTCTTTACTATTTTGTTGTATGATGAAGGAATTGCCTTCTGTTTCTTGTAATTGATGCCTCACACAACATAGAGATTTTTCATGATCCACCCTCTCGGCCCAGCTTATCTTTCACCCAAACTGGAGGTCATCCGGCCAATCTGGTCAATAAACTAGACTAGCAAATTGTGTCTATCTGGTCAATAAACTAGACTAGCAAATTGTCATCTCTCCTTTCTTCTAATCGTTGGCGATTTGCCTCCACGATGGGATCAAGTATGGAACAATTATCTGGACAACATACCAATCATGTTTGTTACATCACCATTTCATGCTTATCCAATGGGCATCACCAGCAACTTCTGTCAGTCTTACTCATCAGTTGCCCGTATGCTAATCATGAGGGTATCAATTCAGTTTATGAACTTAATTTTGAACTTACAGCAATGAAGGGGGTATAGTTGAAATGGAAGGCGAGGTATGATGGGTAATAGGGATGTTAGAGGAGAGGGTGGTGGAGATATCCCGTTGTGCATACAGTGTGGTGTGCAGTTTTTCTTGTAGCAGGAGTTTTCTTCTCATACCGCAAGCCTTTTGAGTTCAGGTATAAGAAAGCCCAATGTAATGTAGGTGGCAGAAAAAAAGGCATGCATGTTGTAGTCCCTATTTATCGATATGTCTGGAGACTGTGTGGATATCAAGGCATGCTCTATAGTGTAGGGCCTTACTTTCATATCATCACCATTGCTTTGCATATGGGTTTATACTCGTACGCGATAGCTTGAAGTTCCTAATCAGCCATATAGCTTTAAAACTCATCACCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCTCTCATGCTTGTCTTACCTACTGGGCCCCTTTTGTTTCTCCTTTGTCCTGTAGTATGAATAAACATCTCCATTGGGTCGCTGTCTTTTCAATTTAAGCACCTAGTTTGGTTTATCCAATGTCCACCTGTTTACCCGAGGTGCTTGATAAATTATTTATGCTCAACTGGTCCTCATCATCAGCAAAATATGTTCCTACTAATTCACTTCTATACAATTTTACATTAGGTTACATTATCCCACGTATTGATAACGTAGTCAAACTACTCAGTCATCATTAGAAAATTGGAAATGTATGGTGTTTACTTCCGAGGTCCAAACCCAACTCTAATTTTGCAGCCTTCTAGGAAATATGCAGGCATGCTGTAAAGTTCCATTTTTTGACATATTCACACTTGTAATTTGAACTTGATTGCATTAAGGTATTATTCTATTTTTCTACAAGTATGCCTAAGATTTTTCTTTTCCTTTGGTGTTTTTAAGGGTATATATGCTCGTGAAGTTCACTCTGTTTCGGTGCGTTTTTAGATGTCTCTTTACATTCTTTACTTGTTTCTTGATGGAATGTCAAAACTTACTGGAAATGTCAAAACAGATACGCCTAGTAGCTGGCCTTCTGTACGGAGTATTTCTTTCCATTTTGTACATGTTCTTCCTGTTTCTGCACCTGAAGCGTTCTGCAAATGCAGAATGTCAGCTACTTGGGGTCCTTTTGGTAGGGTGTAAAAAGTTTTTATGGAAAACGATTTGCCCCTTTTCAATCATTTTACGTTGTTTGGTTTGGTATGGGGTGAAAAACAATTTTCCACTTTTCCCAAAATGATTTTCAATGGTAGGAAAAGTGGTTTCCTCTTTTCCCATTTTCTATTAAGGAACCAAACAACAACAACAACAACAACAAAGCCTTAGTCCCAAAATGATTTGGGGTCGGCTAACATGAACTATTTTGGAATTGTGATTTGCCTTGGAAGATGTTTTCCATAGAAAATCATTTTACATTGAAAACATTTTACACCAAACCAAACGGAGCCTAGCCGTGTGTCTGTTCTTATCCGATCTTTGCTCTGGGGTAGTCGGGTATAACCTACCGGCTACTGTGCCATTTATTTTGTGTGGGAAACGGTCAGCTGCCTCTGCTGATGCTTAGTATTGTAACAGTTATGAGTGGAAGTTGCCTTTTTTTCGTATGGAACCGTTCTTGCTTATTTTCCTAATGTTTAGACCATTTCAATTGAATTTCCTAACTAATATGGTCAGATCTAGCAGGGATGACGGACGGCTTGGCTCCCTTCTTTGTAACAAGGCTATACTAAACTCAACATCTCCTCCTTTCTGCAACAAACACACACTGGAGGCTAAGAAGCACATCAGCCAAGCTTTGAAGAAAAACGGTGTTTCTGCTACGTTATCTAACAAGGTAGCTTCCAAGTTCCATCTTGTTGTAAATGAGTACGTACAATTGATTCAATCTAAGCGAAGAGATATTGCAAGAAGAAATATGGGTAACTTGCAGTAGAAAAAAACAGTGATTACTTGAACAAACCCGAAATCTACATTTTTATCAGTAAATATCAGTATTTTAATGTGCGTGATGGAGCAAGACACTAGACATACCCGATCAAGAAACAACAGGACTTGTCTCAGCTTGATGGTAGTGCGTATGATAGTTTTACGGTTTTACCCCCTCCCCCGTATGTCTTCTAATGTTCTTTTCTCGAGAGATGGCCTGTTACTCTGTTGTTCGGGTTACTGTAACTCTGATAGCAGGCGGGAACTGGGAAAGTGCATGACCAAATGATCAGTTAGTTCAGTATATAATTGCTGTATAGAACATGTTTTCGGCTAAGGTTTGATACTTCTAAACTCGTTTGTAATTAGTATTGTTTAGTACTTCGTACTACCTTTCGATCCGTGTATATGTTATTCAACAGGAAGTGTTATCTGTAGAACTTGCTAGTTGCTACGTAGTACGGAGTAGTTGCTACACACATGGTTAACACGAAGAATTGATCTGCGTCCTCCCTTAATGGGCCAATTTGTGTTTTTATACTCGGGCCTGTCAAAACTAACCCGATTAGAATAACACAGATCATACTTGACCCATTACCGATGATTTGGATGGTCCCGTGACTCCCGTCCAACCCTGAACCAAACGTTCCAAACTTTCAGTAGTTACAATTTCACCTCTGGTGTATATAGGTATATAGGGAAAAAGGATCATACTGAACCAACAATTTCAGGTAGTTTGCTATGTAGGTTAATATTTGAGTCATTTTCATATTTAACGCGGTTAATAAGGCTCGATGTTGTGACCAAGTTTGCCACCAATATCA AGAAAAAAGAAAAGAAAGCTGGCATCTGACTGTTTCTCTCTCACTCCCCAAAAACCACCCGTAAAACCTCCCCAAAATTCTCACCTACCCACCCGAAAACCCCGCACCAAAGAAACCCCAAACTCGACCGAGTCGACTCAGCCATGGAAGGACCTTCTGGTTCTGGAGCACCAATGGCCGATCCAGATGGAGACGACTCGCTCTTAGCGAACTCGGAGTTCTTAACTCGGCAGGAAGTAATGCAACGGCGAGAGCGCAAATTGAGGAAACTCGCCGATTGTTACAGGGATCATTACTGGTCGTTAATGGAGGAGGTGAGGCGAAAACATAGGGAGTACTACTGGACGTACGGAAAGAGTCCTTGCAAGGAAGAAGGGGATGAAGGTGAGGAGAGAGAAAACGGCGTCGCTAATGGAAGTCTGGTGAACGGCAATGGTGTCTCTAACGGTGGAAATGGTGTCGTTAATGGTAGCAATGATGATGACGTTGGTGGTGGTAATAAATTAGAGGTAGGTTTCAAGCATTGTTCTTATAATGGGTGTGAAGGGAAAGCTATGGCGTTAACGCAGTTTTGTATATTGCATATCATGCATGATAAAAAGCAGGTGCTCTACATAAAATGCAAATATCCGAAATTGAGGGATGACGGACGGCTTGGCTCCCTTCTTTGTAACAAGGCTATACTAAACTCAACATCTCCTCCTTTCTGCAACAAACACACACTGGAGGCTAAGAAGCACATCAGCCAAGCTTTGAAGAAAAACGGTGTTTCTGCTACGTTATCTAACAAGGTAGCTTCCAAGTTCCATCTTGTTGTAAATGAGTACGTACAATTGATTCAATCTAAGCGAAGAGATATTGCAAGAAGAAATATGGGTAACTTGCAGTAGAAAAAAACAGTGATTACTTGAACAAACCCGAAATCTACATTTTTATCAGTAAATATCAGTATTTTAATGTGCGTGATGGAGCAAGACACTAGACATACCCGATCAAGAAACAACAGGACTTGTCTCAGCTTGATGGTAGTGCGTATGATAGTTTTACGGTTTTACCCCCTCCCCCGTATGTCTTCTAATGTTCTTTTCTCGAGAGATGGCCTGTTACTCTGTTGTTCGGGTTACTGTAACTCTGATAGCAGGCGGGAACTGGGAAAGTGCATGACCAAATGATCAGTTAGTTCAGTATATAATTGCTGTATAGAACATGTTTTCGGCTAAGGTTTGATACTTCTAAACTCGTTTGTAATTAGTATTGTTTAGTACTTCGTACTACCTTTCGATCCGTGTATATGTTATTCAACAGGAAGTGTTATCTGTAGAACTTGCTAGTTGCTACGTAGTACGGAGTAGTTGCTACACACATGGTTAACACGAAGAATTGATCTGCGTCCTCCCTTAATGGGCCAATTTGTGTTTTTATACTCGGGCCTGTCAAAACTAACCCGATTAGAATAACACAGATCATACTTGACCCATTACCGATGATTTGGATGGTCCCGTGACTCCCGTCCAACCCTGAACCAAACGTTCCAAACTTTCAGTAGTTACAATTTCACCTCTGGTGTATATAGGTATATAGGGAAAAAGGATCATACTGAACCAACAATTTCAGGTAGTTTGCTATGTAGGTTAATATTTGAGTCATTTTCATATTTAACGCGGTTAATAAGGCTCGATGTTGTGACCAAGTTTGCCACCAATATCA ATGGAAGGACCTTCTGGTTCTGGAGCACCAATGGCCGATCCAGATGGAGACGACTCGCTCTTAGCGAACTCGGAGTTCTTAACTCGGCAGGAAGTAATGCAACGGCGAGAGCGCAAATTGAGGAAACTCGCCGATTGTTACAGGGATCATTACTGGTCGTTAATGGAGGAGGTGAGGCGAAAACATAGGGAGTACTACTGGACGTACGGAAAGAGTCCTTGCAAGGAAGAAGGGGATGAAGGTGAGGAGAGAGAAAACGGCGTCGCTAATGGAAGTCTGGTGAACGGCAATGGTGTCTCTAACGGTGGAAATGGTGTCGTTAATGGTAGCAATGATGATGACGTTGGTGGTGGTAATAAATTAGAGGTAGGTTTCAAGCATTGTTCTTATAATGGGTGTGAAGGGAAAGCTATGGCGTTAACGCAGTTTTGTATATTGCATATCATGCATGATAAAAAGCAGGTGCTCTACATAAAATGCAAATATCCGAAATTGAGGGATGACGGACGGCTTGGCTCCCTTCTTTGTAACAAGGCTATACTAAACTCAACATCTCCTCCTTTCTGCAACAAACACACACTGGAGGCTAAGAAGCACATCAGCCAAGCTTTGAAGAAAAACGGTGTTTCTGCTACGTTATCTAACAAGGTAGCTTCCAAGTTCCATCTTGTTGTAAATGAGTACGTACAATTGATTCAATCTAAGCGAAGAGATATTGCAAGAAGAAATATGGGTAACTTGCAGTAG MEGPSGSGAPMADPDGDDSLLANSEFLTRQEVMQRRERKLRKLADCYRDHYWSLMEEVRRKHREYYWTYGKSPCKEEGDEGEERENGVANGSLVNGNGVSNGGNGVVNGSNDDDVGGGNKLEVGFKHCSYNGCEGKAMALTQFCILHIMHDKKQVLYIKCKYPKLRDDGRLGSLLCNKAILNSTSPPFCNKHTLEAKKHISQALKKNGVSATLSNKVASKFHLVVNEYVQLIQSKRRDIARRNMGNLQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12065.1 vs. NCBI nr
Match: gi|902225674|gb|KNA20144.1| (hypothetical protein SOVF_055100 [Spinacia oleracea]) HSP 1 Score: 496.9 bits (1278), Expect = 2.100e-137 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo12065.1 vs. NCBI nr
Match: gi|731326151|ref|XP_010673875.1| (PREDICTED: uncharacterized protein LOC104890183 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 212.6 bits (540), Expect = 7.700e-52 Identity = 134/251 (53.39%), Postives = 167/251 (66.53%), Query Frame = 1
BLAST of Spo12065.1 vs. NCBI nr
Match: gi|720039414|ref|XP_010268296.1| (PREDICTED: INO80 complex subunit D isoform X2 [Nelumbo nucifera]) HSP 1 Score: 194.1 bits (492), Expect = 2.800e-46 Identity = 109/237 (45.99%), Postives = 153/237 (64.56%), Query Frame = 1
BLAST of Spo12065.1 vs. NCBI nr
Match: gi|848868413|ref|XP_012834842.1| (PREDICTED: INO80 complex subunit D-like [Erythranthe guttata]) HSP 1 Score: 191.4 bits (485), Expect = 1.800e-45 Identity = 113/244 (46.31%), Postives = 152/244 (62.30%), Query Frame = 1
BLAST of Spo12065.1 vs. NCBI nr
Match: gi|702433035|ref|XP_010069327.1| (PREDICTED: INO80 complex subunit D-like [Eucalyptus grandis]) HSP 1 Score: 186.0 bits (471), Expect = 7.800e-44 Identity = 109/239 (45.61%), Postives = 153/239 (64.02%), Query Frame = 1
BLAST of Spo12065.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RML9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_055100 PE=4 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 1.400e-137 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo12065.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FFV4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074730 PE=4 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 5.400e-52 Identity = 134/251 (53.39%), Postives = 167/251 (66.53%), Query Frame = 1
BLAST of Spo12065.1 vs. UniProtKB/TrEMBL
Match: A0A059AUK2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00413 PE=4 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 5.400e-44 Identity = 109/239 (45.61%), Postives = 153/239 (64.02%), Query Frame = 1
BLAST of Spo12065.1 vs. UniProtKB/TrEMBL
Match: A0A103YEB1_CYNCS (Putative DNA-binding domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014135 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 2.700e-43 Identity = 97/220 (44.09%), Postives = 136/220 (61.82%), Query Frame = 1
BLAST of Spo12065.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7X2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_209900 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 3.000e-42 Identity = 111/254 (43.70%), Postives = 151/254 (59.45%), Query Frame = 1
BLAST of Spo12065.1 vs. TAIR (Arabidopsis)
Match: AT2G31600.1 (unknown protein) HSP 1 Score: 151.4 bits (381), Expect = 7.500e-37 Identity = 92/235 (39.15%), Postives = 136/235 (57.87%), Query Frame = 1
BLAST of Spo12065.1 vs. TAIR (Arabidopsis)
Match: AT1G05860.1 (unknown protein) HSP 1 Score: 148.3 bits (373), Expect = 6.300e-36 Identity = 87/222 (39.19%), Postives = 129/222 (58.11%), Query Frame = 1
BLAST of Spo12065.1 vs. TAIR (Arabidopsis)
Match: AT3G53860.1 (unknown protein) HSP 1 Score: 136.0 bits (341), Expect = 3.200e-32 Identity = 88/235 (37.45%), Postives = 135/235 (57.45%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12065.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12065.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12065.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo12065.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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