Spo12172 (gene) | SpinachBase

Overview


Name	Spo12172
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 33958532 .. 33958912 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTACACTTGGTGGTTGTAGCGGCGTTCCATCTGTCAAGGACGGCGGGCGCAGGTGCGGGTACCGCCACCGCCAACTTTATAACTCCTCGAATCGCGGCTAACTTGATCTGGCCATTTCTAATCAAGCTCTGTTTAAGCCTCAAAGTTTCACCTCAAGATTTAGTTTCTTCGTCCAGATTCTTTCTTTTTCAAATTGCTCAAATATTTGCCCGAAATAACAACAGCAACAATAATAGTACCAGCAACAACAGCAGTCGACTGGATCGGGCAATTCGATTGGTGCGGGAGAGAGTCGTGCTTGCTAGAGATTCTCCGGCGTCGTTACCAAATGATGATGAACAAAGCCTTCATATACTATCAATGCTTGCTCTTTGA

mRNA sequence

ATGGGAGTACACTTGGTGGTTGTAGCGGCGTTCCATCTGTCAAGGACGGCGGGCGCAGGTGCGGGTACCGCCACCGCCAACTTTATAACTCCTCGAATCGCGGCTAACTTGATCTGGCCATTTCTAATCAAGCTCTGTTTAAGCCTCAAAGTTTCACCTCAAGATTTAGTTTCTTCGTCCAGATTCTTTCTTTTTCAAATTGCTCAAATATTTGCCCGAAATAACAACAGCAACAATAATAGTACCAGCAACAACAGCAGTCGACTGGATCGGGCAATTCGATTGGTGCGGGAGAGAGTCGTGCTTGCTAGAGATTCTCCGGCGTCGTTACCAAATGATGATGAACAAAGCCTTCATATACTATCAATGCTTGCTCTTTGA

Coding sequence (CDS)

ATGGGAGTACACTTGGTGGTTGTAGCGGCGTTCCATCTGTCAAGGACGGCGGGCGCAGGTGCGGGTACCGCCACCGCCAACTTTATAACTCCTCGAATCGCGGCTAACTTGATCTGGCCATTTCTAATCAAGCTCTGTTTAAGCCTCAAAGTTTCACCTCAAGATTTAGTTTCTTCGTCCAGATTCTTTCTTTTTCAAATTGCTCAAATATTTGCCCGAAATAACAACAGCAACAATAATAGTACCAGCAACAACAGCAGTCGACTGGATCGGGCAATTCGATTGGTGCGGGAGAGAGTCGTGCTTGCTAGAGATTCTCCGGCGTCGTTACCAAATGATGATGAACAAAGCCTTCATATACTATCAATGCTTGCTCTTTGA

Protein sequence

MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHILSMLAL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12172.1	Spo12172.1	mRNA

Homology

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BLAST of Spo12172.1 vs. NCBI nr
Match: gi|902229360|gb|KNA21479.1| (hypothetical protein SOVF_042800 [Spinacia oleracea])

HSP 1 Score: 236.1 bits (601), Expect = 3.300e-59
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS 60
           MGVHLVVVAAFHLS+TAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS
Sbjct: 1   MGVHLVVVAAFHLSKTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS 60

Query: 61  RFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHI 120
           RFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHI
Sbjct: 61  RFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHI 120

Query: 121 LSMLAL 127
           LSMLAL
Sbjct: 121 LSMLAL 126

[Close]

BLAST of Spo12172.1 vs. NCBI nr
Match: gi|870845049|gb|KMS97881.1| (hypothetical protein BVRB_5g123110 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 3.300e-35
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS 60
           MGVHLVVVAAFHLSR         + +F  PRIAANLIWPFL+KLCLSLK+ PQDLVSSS
Sbjct: 1   MGVHLVVVAAFHLSR--------GSMSFSIPRIAANLIWPFLVKLCLSLKIPPQDLVSSS 60

Query: 61  RFFLFQIAQIFARNNNSNNN--------STSNNSSRLDRAIRLVRERVVLARDSPASLPN 120
            F LFQI+QIF   NN+NNN        STS +++RLDRA+RLVR+R+ LARDS +SL +
Sbjct: 61  SFLLFQISQIFNHQNNTNNNSTNTITTTSTSTSTTRLDRAVRLVRQRLALARDSSSSLAH 120

Query: 121 DDEQSLHILSMLAL 127
           DDE+SL ILSMLAL
Sbjct: 121 DDEESLRILSMLAL 126

[Close]

BLAST of Spo12172.1 vs. NCBI nr
Match: gi|359474373|ref|XP_003631446.1| (PREDICTED: uncharacterized protein LOC100855263 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.700e-7
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKV---SPQDLV 60
           MG+HL+ +A   L          ++++  +P + ANL+WPFLIKL  S +    +  D++
Sbjct: 1   MGLHLLALAKLKL---------LSSSHSCSP-LVANLVWPFLIKLSYSFRFVHGAYADVI 60

Query: 61  SSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQS 120
            +SR F FQ+ QI              N +RL+RAIRLV  R  L R S + +  DDE S
Sbjct: 61  HASRLFFFQLRQI----TFDPQQDDLGNGTRLERAIRLVHRR--LTRSSRSQM--DDEDS 111

Query: 121 LHILSMLAL 127
           LH LSMLAL
Sbjct: 121 LHTLSMLAL 111

[Close]

BLAST of Spo12172.1 vs. NCBI nr
Match: gi|567895660|ref|XP_006440318.1| (hypothetical protein CICLE_v10022924mg [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 1.500e-6
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQ---DLV 60
           MG+H+V +A   L  +A      AT++ I P I A L+ P ++K C S ++  Q   DLV
Sbjct: 1   MGLHMVALAKLKLLSSA------ATSHSICPAILAGLVCPLVLKFCFSFRLVRQAYIDLV 60

Query: 61  SSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQS 120
            +SR F+FQ+ QI A ++    +S  +  SR  RA+RLV ERV L      +    DE  
Sbjct: 61  YASRLFVFQLGQI-AFDSGPPASSNHSLGSRWQRALRLVCERVTL------TPTQSDEHD 116

Query: 121 LHILSMLAL 127
            H L++++L
Sbjct: 121 FHTLTLISL 116

[Close]

BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRE1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042800 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.300e-59
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS 60
           MGVHLVVVAAFHLS+TAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS
Sbjct: 1   MGVHLVVVAAFHLSKTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS 60

Query: 61  RFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHI 120
           RFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHI
Sbjct: 61  RFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHI 120

Query: 121 LSMLAL 127
           LSMLAL
Sbjct: 121 LSMLAL 126

[Close]

BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAC3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123110 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.300e-35
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSS 60
           MGVHLVVVAAFHLSR         + +F  PRIAANLIWPFL+KLCLSLK+ PQDLVSSS
Sbjct: 1   MGVHLVVVAAFHLSR--------GSMSFSIPRIAANLIWPFLVKLCLSLKIPPQDLVSSS 60

Query: 61  RFFLFQIAQIFARNNNSNNN--------STSNNSSRLDRAIRLVRERVVLARDSPASLPN 120
            F LFQI+QIF   NN+NNN        STS +++RLDRA+RLVR+R+ LARDS +SL +
Sbjct: 61  SFLLFQISQIFNHQNNTNNNSTNTITTTSTSTSTTRLDRAVRLVRQRLALARDSSSSLAH 120

Query: 121 DDEQSLHILSMLAL 127
           DDE+SL ILSMLAL
Sbjct: 121 DDEESLRILSMLAL 126

[Close]

BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: F6HPB7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00580 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-7
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKV---SPQDLV 60
           MG+HL+ +A   L          ++++  +P + ANL+WPFLIKL  S +    +  D++
Sbjct: 1   MGLHLLALAKLKL---------LSSSHSCSP-LVANLVWPFLIKLSYSFRFVHGAYADVI 60

Query: 61  SSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQS 120
            +SR F FQ+ QI              N +RL+RAIRLV  R  L R S + +  DDE S
Sbjct: 61  HASRLFFFQLRQI----TFDPQQDDLGNGTRLERAIRLVHRR--LTRSSRSQM--DDEDS 111

Query: 121 LHILSMLAL 127
           LH LSMLAL
Sbjct: 121 LHTLSMLAL 111

[Close]

BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: A0A067F227_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038730mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-6
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQ---DLV 60
           MG+H+V +A   L  +A      AT++ I P I A L+ P ++K C S ++  Q   DLV
Sbjct: 1   MGLHMVALAKLKLLSSA------ATSHSICPAILAGLVCPLVLKFCFSFRLVRQAYIDLV 60

Query: 61  SSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQS 120
            +SR F+FQ+ QI A ++    +S  +  SR  RA+RLV ERV L      +    DE  
Sbjct: 61  YASRLFVFQLGQI-AFDSGPPASSNHSLGSRWQRALRLVCERVTL------TPTQSDEHD 116

Query: 121 LHILSMLAL 127
            H L++++L
Sbjct: 121 FHTLTLISL 116

[Close]

BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: V4T098_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022924mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-6
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 1   MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQ---DLV 60
           MG+H+V +A   L  +A      AT++ I P I A L+ P ++K C S ++  Q   DLV
Sbjct: 1   MGLHMVALAKLKLLSSA------ATSHSICPAILAGLVCPLVLKFCFSFRLVRQAYIDLV 60

Query: 61  SSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQS 120
            +SR F+FQ+ QI A ++    +S  +  SR  RA+RLV ERV L      +    DE  
Sbjct: 61  YASRLFVFQLGQI-AFDSGPPASSNHSLGSRWQRALRLVCERVTL------TPTQSDEHD 116

Query: 121 LHILSMLAL 127
            H L++++L
Sbjct: 121 FHTLTLISL 116

The following BLAST results are available for this feature:

BLAST of Spo12172.1 vs. NCBI nr
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
BLAST of Spo12172.1 vs. ExPASy Swiss-Prot
BLAST of Spo12172.1 vs. TAIR (Arabidopsis)

BLAST of Spo12172.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
gi\|902229360\|gb\|KNA21479.1\|	3.3e-59	99.2	hypothetical protein SOVF_0428...	[more]
gi\|870845049\|gb\|KMS97881.1\|	3.3e-35	65.6	hypothetical protein BVRB_5g12...	[more]
gi\|359474373\|ref\|XP_003631446.1\|	1.7e-7	39.5	PREDICTED: uncharacterized pro...	[more]
gi\|567895660\|ref\|XP_006440318.1\|	1.5e-6	36.4	hypothetical protein CICLE_v10...	[more]

BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RRE1_SPIOL	2.3e-59	99.2	Uncharacterized protein OS=Spi...	[more]
A0A0J8BAC3_BETVU	2.3e-35	65.6	Uncharacterized protein OS=Bet...	[more]
F6HPB7_VITVI	1.2e-7	39.5	Putative uncharacterized prote...	[more]
A0A067F227_CITSI	1.0e-6	36.4	Uncharacterized protein OS=Cit...	[more]
V4T098_9ROSI	1.0e-6	36.4	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo12172.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12172.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38925	FAMILY NOT NAMED	coord: 2..126 score: 1.6

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01514	0.66	Barchart \| Table
Spo26899	0.66	Barchart \| Table
Spo24811	0.65	Barchart \| Table
Spo25350	0.65	Barchart \| Table