Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAACCTTGCATATCTACTATCTAGTTTTATCCACTCAACTTTCAACCTCTAGTAACCTCTCAAACAATCTATTCACACCAAATCCCTTTTGCAATCAATCAAATCCATGACTCTATGAGTACATATAGCACCGACAAACACACTACACAGTACACACCCACGTTTAGCTGGCTAAATTACGAGTATTTTCCCATATTAATCACGTCAAAAATATAAATATAATCCCACATCCCATCTAGAAGCGGGAAATCCAAAAATAATCAACAGTCTTAAAATTTTCCCAGAAAAATACAATAAAAAATGGGTTCTCTTCCTGCACAATCAAACCCCATAATTCATGAAGAACAACAAAAGTTAAACGAATCAACCCTCTTAAACCTCTTCAAATCGCAACAGACTTATCTAAATTACTTCTTCCAACACTTAGATCTCTCACAAACCCTGAAATTCACCCAGATTTTGCTGAATTCTAAGGGAACAATCTTCTTCACCGGGGTTGGTAAATCTGGGTTTGTAGCCCAGAAAATTTCTCAGACTTTGATTTCTCTGGGGATCCGAGCTGGGTTTCTCGCTCCTGTCGATGCCCTTCATGGGGACATCGGAATTCTCACGAGGAACGACGTCGTTGTGTTGTTTAGCAAGTCAGGGAATAGCGAGGAATTGATTAGATTAGCCCCCTGTGCCAAAGCTAAGGGTGCTTATTTGGTTGGAATTACTTCCAGTTTGAGTAATAATTTGATGGGTTTTTGTGATCTTAATGTGCATTTGCCTTTGGAGAGAGAATTGTGCCCCTTCGATCTAGCTCCGGTCACTTCCACGGCTATCCAGATGGTTTTTGGGGATACCGTGGCAATTGCGTTGATGAGTGCTAGGAATTTGACCAAGGAGGCTTATGCTGCTAATCATCCTGCTGGCAAGATTGGGAAGAGTCTCATTTTTAAGGTATTGATTTTATATTATACTTCGTATTATATATGATGTTGAATGGTTTTGGATGAACATTAATTTTACTCCTTTTTATATTTATGTAGTTGACTTGATTAGTAGGAAAAACTTCATTGTCAAGGTCAAGGTTATGATTGGGAAGGGCTTCATTGTCAACATTGTGATTTGGGTTTGTATAGAAATGTTGTTATGTTATGGAGTTTATATGGCTTAGTTGGAGAGTGGTTTTGATCTTCAAGTTGAGAAAATCCCCCATTAGTTTTAGAGCTTGTCCCTGGTGTTCTTTTCGTCGTTGTAAAAGGTTTATTTATAACTAATAAGTACTCCTTGGCTGTAGTCAATAATTGTTCAAGTTATAATCAATTTCACAGTAAATTCAAATTCTGGGTGGAGGAAGTATTTGATAGGTGTTATCTATCTAGAGAACGAGCAATAGTATACTTAAAGTATGGGATATAGCGACGGAGCTTGTATGCAGTTCTTTTGATCGTTTGATTATGCTGGATCACTCATTTGGGTTTTGTGTTTGATAAAGTTTTCGCTGTTTAATGCTGCTGTTTTATGGTGCAATACTCTAATAATAATACCTTTTGGAGAAGCTTTGCAAGATTAATGGAGACTTATGATATTTAGATATGATATGATAAAAATACAGGCTGCATTTTGTTCCCAGGATTATGGTTGTGATTTTTGATATTTTCTTTAGTATGATGTCCTAAGTTGGTGGATAAGCGTGCAGAACTGAGATTAGATATCATTAGCTTTGAGCTTTTTCTATTGTTTCTGATTTTGCAAGTAGTTGGATTTCAGTATGCCTATTATACAGTTTTGTTTTATGGTAGTAGGATGGTGTATAACTGTTTACAAATTACATGTTTCATGCAATTTTTCTTAAAACTATTGTTTTCTGACTTTTGTGAATATATTGACCTTTTCATACTTACCTAGCAGGGATCGGTAACTTTTGAGTTGGAGCCTAATAAATTTGCCATTTTAAAAGTTTCAAGTTTCAAAGAAAGTGGTGGTTTTGAGTGTCTAGTGCAGGCATTAATCTCAGTGAAATATTTTGTGAGGATTTCTAATTTGAGTCTGGCATTGGGGCAATGGAAAACTCGCTCAACATTATGTTGTAGCTCCAGTTTTCTTTACAAAAAGATAAATGAAAACTGCCAAAGGTTGCTGGTGGATGACCTACTAAACTGTTGTTATTCGCTTTTGCAGGTGAAGGATGTGATGAAGAAGCAAGAGGAACTTCCTGTTTGCAAGGAAGGAGACCTTATAATGGATCAGCTAGTTGGGCTTACCACTGGAGGATGTGGATGCCTTCTCGTTATTGACGATAATTACCATCTAATTGGCACCTTTACAGATGGAGACTTGAGGCGTACACTTAAATCTAGTGGAGAGGGAATCTTCAAGCTTACAGTTGGAGAGATGTGCAACAGGTAACTATCCTCTCTATGTAGAAGTCTTAACACTTGGCCAACATGTTTTCTTGAAATAAGATAAGGAGATTGCTTGGGTTGAGGAAGCAAGAGTCTCATGAAGGCCTCTAGAGAGTAGCAACTAGCAACATGGTATTGGTATCATTATGTTCTTAGCATGTCCTCTTCTCTGTTGTCCTTGTCAAAACAGATAGTGACAGCTCCGTTTCAAGTCTATGCAAGTCACACTGAACGTTCTGTCAAATCAACTAGTCTTGCTACTTTTTAGAAATAAATCTCGTATTCAAAGTAATCTTGCTACTTTCAGAATAAACTCTTAGGCCGAGAAATCCTGTTAGTTTTTATGATCAATCTATAAGGCCCAAACGCCCAGCAATCTCTCTACACTTTTCATCTCTTATTCACAAGCACAAGCAGTATTAAATATCTTCAGGTTTTGAGCTGTAACTTACAAGTAATCTTTTTTTGTCACATTAGAGTATCCGAAATCGTTACAGAACATTTCCCCATGCTTTCCAAAAAAAAAGAAAATAAAAATAAAAAATCAAGGATCGTACTAAGCATACCAATATCTCTCTGATCTAAAATTCATGTTTGAAATGGGTATGTCAGTTGAGATTAGGAGAGACACAGCTTACCTTGACCTGAACAGTTGAAATCTATGGACATTTACTACACTTTTACCATATCATTAGTACAATTCGAAAAAAATTCACCTGCAGCAACCAATGTACATTTAACCTGTCCTTACCCATCTTGTTACATCCATCCATCTATGATATAGGCATCAAAACTATACACAAGAAAACCAACAAAGGAAGCACTATGCAAGCTCATTGATAACAGGCCATTGATTTAAAAAAAGGTATTGATCACAGGCTCTAGTTCGTTCATATAATAAGTGGCAAGATGTTAAGTCCATTATCATTCAGTGTATCACTTTATGAACTAGACATCTTTTAGGTGCTATGTTTCTGTTCTTCAGAAGCTCTCTGTCTAACATGTATGCTTGCATTCTCATTCTGATGAATCTCTCTGTCTAACATGGATGCTACAGTTCTGCTCTTCCGAGGAGCATGATGAAATACTTGATAGTTTTATTTGGGTTATCAGCAAGCAAAAGACATTCTGCATTTTCTCCCTTTTTTTTTGTAAATAATAAGATAACTAGTACATATTATGCCTGTTAATAATATGGTTTCCTCTCTGTGATAATCCACAGGCACCCTAGAATCATAGGGCCTGATGCAATGGCAGTTGAGGCAATGCAAAAGATGGAATCTCCACCATCCCCTGTGCAATTTTTGCCTGTCATTAATGATCAAGACATTTTGATCGGGATTATTACCTTGCACGGTTTAGTCTCTGCAGGTTTATGACTTTACACATCCTCGTCTGTTTGATTAGCATCACTATTCTTTCTAATAGGTCCACTACAGTTTCTCTCTTTCCTCCTTTGTCAAAATAGAAAATCACTAGGCAGTTATTAAGACTATGCATCAGAGTGATGCTGATTCATGCTTTGTTGTTTTCATGTACGGCATTCTTTCCCAATGTAGAAGCTTCTTGTTTACTAGGCTTCCTATATATATCTGTATAACCTCATCAAGTTTTTCTACTTGACAATATTCTTCTTTCCAGCTTATTTTGGACCACTTTGTTTAGCTTGGCAAGATGATCACACGCATTTCCTATTTTCGATTTGGCACTAGCCAACGATGCCT CCAACCTTGCATATCTACTATCTAGTTTTATCCACTCAACTTTCAACCTCTAGTAACCTCTCAAACAATCTATTCACACCAAATCCCTTTTGCAATCAATCAAATCCATGACTCTATGAGTACATATAGCACCGACAAACACACTACACAGTACACACCCACGTTTAGCTGGCTAAATTACGAGTATTTTCCCATATTAATCACGTCAAAAATATAAATATAATCCCACATCCCATCTAGAAGCGGGAAATCCAAAAATAATCAACAGTCTTAAAATTTTCCCAGAAAAATACAATAAAAAATGGGTTCTCTTCCTGCACAATCAAACCCCATAATTCATGAAGAACAACAAAAGTTAAACGAATCAACCCTCTTAAACCTCTTCAAATCGCAACAGACTTATCTAAATTACTTCTTCCAACACTTAGATCTCTCACAAACCCTGAAATTCACCCAGATTTTGCTGAATTCTAAGGGAACAATCTTCTTCACCGGGGTTGGTAAATCTGGGTTTGTAGCCCAGAAAATTTCTCAGACTTTGATTTCTCTGGGGATCCGAGCTGGGTTTCTCGCTCCTGTCGATGCCCTTCATGGGGACATCGGAATTCTCACGAGGAACGACGTCGTTGTGTTGTTTAGCAAGTCAGGGAATAGCGAGGAATTGATTAGATTAGCCCCCTGTGCCAAAGCTAAGGGTGCTTATTTGGTTGGAATTACTTCCAGTTTGAGTAATAATTTGATGGGTTTTTGTGATCTTAATGTGCATTTGCCTTTGGAGAGAGAATTGTGCCCCTTCGATCTAGCTCCGGTCACTTCCACGGCTATCCAGATGGTTTTTGGGGATACCGTGGCAATTGCGTTGATGAGTGCTAGGAATTTGACCAAGGAGGCTTATGCTGCTAATCATCCTGCTGGCAAGATTGGGAAGAGTCTCATTTTTAAGGTGAAGGATGTGATGAAGAAGCAAGAGGAACTTCCTGTTTGCAAGGAAGGAGACCTTATAATGGATCAGCTAGTTGGGCTTACCACTGGAGGATGTGGATGCCTTCTCGTTATTGACGATAATTACCATCTAATTGGCACCTTTACAGATGGAGACTTGAGGCGTACACTTAAATCTAGTGGAGAGGGAATCTTCAAGCTTACAGTTGGAGAGATGTGCAACAGGCACCCTAGAATCATAGGGCCTGATGCAATGGCAGTTGAGGCAATGCAAAAGATGGAATCTCCACCATCCCCTGTGCAATTTTTGCCTGTCATTAATGATCAAGACATTTTGATCGGGATTATTACCTTGCACGGTTTAGTCTCTGCAGGTTTATGACTTTACACATCCTCGTCTGTTTGATTAGCATCACTATTCTTTCTAATAGGTCCACTACAGTTTCTCTCTTTCCTCCTTTGTCAAAATAGAAAATCACTAGGCAGTTATTAAGACTATGCATCAGAGTGATGCTGATTCATGCTTTGTTGTTTTCATGTACGGCATTCTTTCCCAATGTAGAAGCTTCTTGTTTACTAGGCTTCCTATATATATCTGTATAACCTCATCAAGTTTTTCTACTTGACAATATTCTTCTTTCCAGCTTATTTTGGACCACTTTGTTTAGCTTGGCAAGATGATCACACGCATTTCCTATTTTCGATTTGGCACTAGCCAACGATGCCT ATGGGTTCTCTTCCTGCACAATCAAACCCCATAATTCATGAAGAACAACAAAAGTTAAACGAATCAACCCTCTTAAACCTCTTCAAATCGCAACAGACTTATCTAAATTACTTCTTCCAACACTTAGATCTCTCACAAACCCTGAAATTCACCCAGATTTTGCTGAATTCTAAGGGAACAATCTTCTTCACCGGGGTTGGTAAATCTGGGTTTGTAGCCCAGAAAATTTCTCAGACTTTGATTTCTCTGGGGATCCGAGCTGGGTTTCTCGCTCCTGTCGATGCCCTTCATGGGGACATCGGAATTCTCACGAGGAACGACGTCGTTGTGTTGTTTAGCAAGTCAGGGAATAGCGAGGAATTGATTAGATTAGCCCCCTGTGCCAAAGCTAAGGGTGCTTATTTGGTTGGAATTACTTCCAGTTTGAGTAATAATTTGATGGGTTTTTGTGATCTTAATGTGCATTTGCCTTTGGAGAGAGAATTGTGCCCCTTCGATCTAGCTCCGGTCACTTCCACGGCTATCCAGATGGTTTTTGGGGATACCGTGGCAATTGCGTTGATGAGTGCTAGGAATTTGACCAAGGAGGCTTATGCTGCTAATCATCCTGCTGGCAAGATTGGGAAGAGTCTCATTTTTAAGGTGAAGGATGTGATGAAGAAGCAAGAGGAACTTCCTGTTTGCAAGGAAGGAGACCTTATAATGGATCAGCTAGTTGGGCTTACCACTGGAGGATGTGGATGCCTTCTCGTTATTGACGATAATTACCATCTAATTGGCACCTTTACAGATGGAGACTTGAGGCGTACACTTAAATCTAGTGGAGAGGGAATCTTCAAGCTTACAGTTGGAGAGATGTGCAACAGGCACCCTAGAATCATAGGGCCTGATGCAATGGCAGTTGAGGCAATGCAAAAGATGGAATCTCCACCATCCCCTGTGCAATTTTTGCCTGTCATTAATGATCAAGACATTTTGATCGGGATTATTACCTTGCACGGTTTAGTCTCTGCAGGTTTATGA MGSLPAQSNPIIHEEQQKLNESTLLNLFKSQQTYLNYFFQHLDLSQTLKFTQILLNSKGTIFFTGVGKSGFVAQKISQTLISLGIRAGFLAPVDALHGDIGILTRNDVVVLFSKSGNSEELIRLAPCAKAKGAYLVGITSSLSNNLMGFCDLNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMSARNLTKEAYAANHPAGKIGKSLIFKVKDVMKKQEELPVCKEGDLIMDQLVGLTTGGCGCLLVIDDNYHLIGTFTDGDLRRTLKSSGEGIFKLTVGEMCNRHPRIIGPDAMAVEAMQKMESPPSPVQFLPVINDQDILIGIITLHGLVSAGL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12234.1 vs. NCBI nr
Match: gi|902189921|gb|KNA11499.1| (hypothetical protein SOVF_134670 [Spinacia oleracea]) HSP 1 Score: 671.0 bits (1730), Expect = 1.100e-189 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 1
BLAST of Spo12234.1 vs. NCBI nr
Match: gi|731365398|ref|XP_010694505.1| (PREDICTED: probable arabinose 5-phosphate isomerase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 605.5 bits (1560), Expect = 5.600e-170 Identity = 301/340 (88.53%), Postives = 327/340 (96.18%), Query Frame = 1
BLAST of Spo12234.1 vs. NCBI nr
Match: gi|802717408|ref|XP_012085302.1| (PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]) HSP 1 Score: 556.6 bits (1433), Expect = 3.000e-155 Identity = 279/342 (81.58%), Postives = 311/342 (90.94%), Query Frame = 1
BLAST of Spo12234.1 vs. NCBI nr
Match: gi|720095820|ref|XP_010246798.1| (PREDICTED: probable arabinose 5-phosphate isomerase [Nelumbo nucifera]) HSP 1 Score: 553.1 bits (1424), Expect = 3.300e-154 Identity = 277/342 (80.99%), Postives = 309/342 (90.35%), Query Frame = 1
BLAST of Spo12234.1 vs. NCBI nr
Match: gi|747051855|ref|XP_011072023.1| (PREDICTED: probable arabinose 5-phosphate isomerase isoform X1 [Sesamum indicum]) HSP 1 Score: 545.4 bits (1404), Expect = 6.900e-152 Identity = 273/344 (79.36%), Postives = 306/344 (88.95%), Query Frame = 1
BLAST of Spo12234.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QW57_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134670 PE=3 SV=1) HSP 1 Score: 671.0 bits (1730), Expect = 7.600e-190 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 1
BLAST of Spo12234.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBP2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093600 PE=3 SV=1) HSP 1 Score: 605.5 bits (1560), Expect = 3.900e-170 Identity = 301/340 (88.53%), Postives = 327/340 (96.18%), Query Frame = 1
BLAST of Spo12234.1 vs. UniProtKB/TrEMBL
Match: A0A067K2N0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17678 PE=3 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 2.100e-155 Identity = 279/342 (81.58%), Postives = 311/342 (90.94%), Query Frame = 1
BLAST of Spo12234.1 vs. UniProtKB/TrEMBL
Match: B9H8N8_POPTR (Sugar isomerase domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s24740g PE=3 SV=1) HSP 1 Score: 542.0 bits (1395), Expect = 5.300e-151 Identity = 274/341 (80.35%), Postives = 305/341 (89.44%), Query Frame = 1
BLAST of Spo12234.1 vs. UniProtKB/TrEMBL
Match: A9PBR5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03850g PE=2 SV=1) HSP 1 Score: 540.8 bits (1392), Expect = 1.200e-150 Identity = 272/341 (79.77%), Postives = 305/341 (89.44%), Query Frame = 1
BLAST of Spo12234.1 vs. ExPASy Swiss-Prot
Match: SETH3_ARATH (Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1) HSP 1 Score: 507.3 bits (1305), Expect = 1.300e-142 Identity = 254/350 (72.57%), Postives = 297/350 (84.86%), Query Frame = 1
BLAST of Spo12234.1 vs. ExPASy Swiss-Prot
Match: Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 1.300e-62 Identity = 130/317 (41.01%), Postives = 194/317 (61.20%), Query Frame = 1
BLAST of Spo12234.1 vs. ExPASy Swiss-Prot
Match: Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0679 PE=3 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 3.800e-57 Identity = 118/322 (36.65%), Postives = 192/322 (59.63%), Query Frame = 1
BLAST of Spo12234.1 vs. ExPASy Swiss-Prot
Match: Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_399 PE=3 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.400e-56 Identity = 117/322 (36.34%), Postives = 195/322 (60.56%), Query Frame = 1
BLAST of Spo12234.1 vs. ExPASy Swiss-Prot
Match: Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.100e-52 Identity = 108/293 (36.86%), Postives = 179/293 (61.09%), Query Frame = 1
BLAST of Spo12234.1 vs. TAIR (Arabidopsis)
Match: AT3G54690.1 (Sugar isomerase (SIS) family protein) HSP 1 Score: 507.3 bits (1305), Expect = 7.400e-144 Identity = 254/350 (72.57%), Postives = 297/350 (84.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12234.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12234.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12234.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12234.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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