Spo12254 (gene) | SpinachBase

Overview


Name	Spo12254
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_26012 : 834 .. 1323 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACACCTTCGCAGCTAGCTTCTTAGAGGGACTATGGCGTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGTCTTGACCGACAGGTCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGATTCGCCGCCGGCGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAG

mRNA sequence

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGATTCGCCGCCGGCGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAG

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGATTCGCCGCCGGCGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAG

Protein sequence

MGGGAWPFLVGGAICLIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDVARSSLNLII

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12254.1	Spo12254.1	mRNA

Homology

[Close]

BLAST of Spo12254.1 vs. NCBI nr
Match: gi|947068861|gb|KRH17752.1| (hypothetical protein GLYMA_13G012700 [Glycine max])

HSP 1 Score: 146.7 bits (369), Expect = 1.700e-32
Identity = 77/99 (77.78%), Postives = 77/99 (77.78%), Query Frame = 1

		  
Query: 1  MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAAGDVARSSLNLII 83
          CTHRPSLLPIEWSGEVFG RRR RFAA DV RS LNLII
Sbjct: 61 CTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLNLII 99

[Close]

BLAST of Spo12254.1 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 145.6 bits (366), Expect = 3.800e-32
Identity = 79/112 (70.54%), Postives = 79/112 (70.54%), Query Frame = 1

		  
Query: 1   MGGGAWPFLVGGAICL------------------------------IIAIVGLQRGIPSK 60
           MGGGAWPFLVGGAICL                              IIAIVGLQRGIPSK
Sbjct: 679 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVILRGQLLRGTMAIIAIVGLQRGIPSK 738

Query: 61  RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDVARSSLNLII 83
           RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRG FAA DVARS LNLII
Sbjct: 739 RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARSPLNLII 790

[Close]

BLAST of Spo12254.1 vs. NCBI nr
Match: gi|922327855|ref|XP_013443320.1| (hypothetical protein MTR_0021s0120 [Medicago truncatula])

HSP 1 Score: 139.4 bits (350), Expect = 2.800e-30
Identity = 72/92 (78.26%), Postives = 72/92 (78.26%), Query Frame = 1

		  
Query: 1  MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAAGDVAR 76
          CTHRPSLLPIEWSGEVFG RRRGRFAA DV R
Sbjct: 61 CTHRPSLLPIEWSGEVFGLRRRGRFAARDVVR 92

[Close]

BLAST of Spo12254.1 vs. NCBI nr
Match: gi|700206742|gb|KGN61861.1| (hypothetical protein Csa_2G252100 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.600e-28
Identity = 71/104 (68.27%), Postives = 75/104 (72.12%), Query Frame = 1

		  
Query: 1   MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGR-------FAAGDVARSSLNL 81
           CTHRPSLLPIEWSGEVFGSRRRGR        + G+ A  SL++
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSM 104

[Close]

BLAST of Spo12254.1 vs. NCBI nr
Match: gi|147791048|emb|CAN65763.1| (hypothetical protein VITISV_001840 [Vitis vinifera])

HSP 1 Score: 132.5 bits (332), Expect = 3.400e-28
Identity = 69/90 (76.67%), Postives = 69/90 (76.67%), Query Frame = 1

		  
Query: 1  MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKR S ARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVKIIAIVGLQRGIPSKRXSLARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAAGDV 74
          CTHRPSLLPIEWSGEVFGSRRRGR AA DV
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGRSAARDV 90

[Close]

BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
Match: A0A0R0GQW8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G012700 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.200e-32
Identity = 77/99 (77.78%), Postives = 77/99 (77.78%), Query Frame = 1

		  
Query: 1  MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAAGDVARSSLNLII 83
          CTHRPSLLPIEWSGEVFG RRR RFAA DV RS LNLII
Sbjct: 61 CTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLNLII 99

[Close]

BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
Match: A0A072TUX5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0120 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.900e-30
Identity = 72/92 (78.26%), Postives = 72/92 (78.26%), Query Frame = 1

		  
Query: 1  MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAAGDVAR 76
          CTHRPSLLPIEWSGEVFG RRRGRFAA DV R
Sbjct: 61 CTHRPSLLPIEWSGEVFGLRRRGRFAARDVVR 92

[Close]

BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LPG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.800e-28
Identity = 71/104 (68.27%), Postives = 75/104 (72.12%), Query Frame = 1

		  
Query: 1   MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGR-------FAAGDVARSSLNL 81
           CTHRPSLLPIEWSGEVFGSRRRGR        + G+ A  SL++
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSM 104

[Close]

BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
Match: A5BKB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001840 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.300e-28
Identity = 69/90 (76.67%), Postives = 69/90 (76.67%), Query Frame = 1

		  
Query: 1  MGGGAWPFLVGGAICL-----------------IIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICL                 IIAIVGLQRGIPSKR S ARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVKIIAIVGLQRGIPSKRXSLARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAAGDV 74
          CTHRPSLLPIEWSGEVFGSRRRGR AA DV
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGRSAARDV 90

[Close]

BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
Match: A0A0R0GH50_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G012500 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.500e-27
Identity = 70/103 (67.96%), Postives = 70/103 (67.96%), Query Frame = 1

		  
Query: 1   MGGGAWPFLVGGAICL------------------------------IIAIVGLQRGIPSK 60
           MGGGAWPFLVGGAICL                              IIAIVGLQRGIPSK
Sbjct: 240 MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVTLHGQLLRGTMAIIAIVGLQRGIPSK 299

Query: 61  RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDV 74
           RESSARVDYVPALCTHRPSLLPIEWSGEVFG RRR RFAA DV
Sbjct: 300 RESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAARDV 342

The following BLAST results are available for this feature:

BLAST of Spo12254.1 vs. NCBI nr
BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
BLAST of Spo12254.1 vs. ExPASy Swiss-Prot
BLAST of Spo12254.1 vs. TAIR (Arabidopsis)

BLAST of Spo12254.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|947068861\|gb\|KRH17752.1\|	1.7e-32	77.7	hypothetical protein GLYMA_13G...	[more]
gi\|694380941\|ref\|XP_009366572.1\|	3.8e-32	70.5	PREDICTED: uncharacterized pro...	[more]
gi\|922327855\|ref\|XP_013443320.1\|	2.8e-30	78.2	hypothetical protein MTR_0021s...	[more]
gi\|700206742\|gb\|KGN61861.1\|	2.6e-28	68.2	hypothetical protein Csa_2G252...	[more]
gi\|147791048\|emb\|CAN65763.1\|	3.4e-28	76.6	hypothetical protein VITISV_00...	[more]

BLAST of Spo12254.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0R0GQW8_SOYBN	1.2e-32	77.7	Uncharacterized protein OS=Gly...	[more]
A0A072TUX5_MEDTR	1.9e-30	78.2	Uncharacterized protein OS=Med...	[more]
A0A0A0LPG1_CUCSA	1.8e-28	68.2	Uncharacterized protein OS=Cuc...	[more]
A5BKB8_VITVI	2.3e-28	76.6	Putative uncharacterized prote...	[more]
A0A0R0GH50_SOYBN	1.5e-27	67.9	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo12254.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12254.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21464	0.72	Barchart \| Table